Wall clock time and date at job start Tue Mar 31 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 120.00318 * 2 1 4 4 C 1.50693 * 109.47317 * 270.00375 * 3 2 1 5 5 H 1.08005 * 119.99853 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00308 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99716 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00447 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47163 * 90.00298 * 8 6 4 10 10 H 1.48499 * 109.47388 * 210.00299 * 8 6 4 11 11 H 1.48502 * 109.46772 * 330.00078 * 8 6 4 12 12 C 1.34777 * 120.00022 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00270 * 179.97438 * 12 2 1 14 14 C 1.50705 * 120.00046 * 359.97438 * 12 2 1 15 15 H 1.09001 * 110.88345 * 62.35570 * 14 12 2 16 16 C 1.54625 * 110.96846 * 298.54945 * 14 12 2 17 17 C 1.51286 * 104.19405 * 266.67749 * 16 14 12 18 18 O 1.21305 * 124.94364 * 163.78320 * 17 16 14 19 19 N 1.34417 * 110.11297 * 343.74897 * 17 16 14 20 20 C 1.40762 * 124.34661 * 179.57357 * 19 17 16 21 21 C 1.40260 * 126.08165 * 179.71356 * 20 19 17 22 22 N 1.30830 * 108.33423 * 179.81823 * 21 20 19 23 23 N 1.40066 * 108.36936 * 0.43814 * 22 21 20 24 24 H 0.97002 * 126.05182 * 179.69873 * 23 22 21 25 25 C 1.35752 * 126.08205 * 0.02562 * 20 19 17 26 26 C 1.46761 * 111.30293 * 359.59072 * 19 17 16 27 27 H 1.08994 * 109.46868 * 269.99890 * 1 2 3 28 28 H 1.09005 * 109.47030 * 29.99629 * 1 2 3 29 29 H 1.08996 * 109.47462 * 149.99723 * 1 2 3 30 30 H 1.08999 * 109.46964 * 30.00475 * 3 2 1 31 31 H 1.08997 * 109.47312 * 150.00049 * 3 2 1 32 32 H 0.96997 * 119.99991 * 179.97438 * 7 6 4 33 33 H 1.09001 * 110.48978 * 147.99721 * 16 14 12 34 34 H 1.09000 * 110.49031 * 25.35151 * 16 14 12 35 35 H 1.08001 * 125.82589 * 359.97438 * 21 20 19 36 36 H 1.08004 * 126.21825 * 359.97438 * 25 20 19 37 37 H 1.08998 * 110.24663 * 136.02095 * 26 19 17 38 38 H 1.09002 * 110.24657 * 258.02169 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6730 8 14 3.4380 3.4170 -3.4338 9 1 2.3079 4.2593 -3.9012 10 1 4.6980 4.2003 -3.4960 11 1 3.5561 2.2196 -4.3043 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.7815 -2.5724 -0.9025 16 6 0.5116 -2.6068 1.2681 17 6 1.3890 -3.3583 2.2449 18 8 1.1960 -3.4283 3.4404 19 7 2.4131 -3.9378 1.5951 20 6 3.4165 -4.7043 2.2172 21 6 4.4961 -5.3288 1.5755 22 7 5.2138 -5.9427 2.4809 23 7 4.6142 -5.7413 3.7306 24 1 4.9323 -6.0878 4.5789 25 6 3.5081 -4.9756 3.5442 26 6 2.3510 -3.6682 0.1538 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6086 2.0283 0.5139 31 1 3.1500 1.1384 0.5138 32 1 4.0303 4.4439 -0.8502 33 1 -0.3919 -3.1765 1.0505 34 1 0.2576 -1.6229 1.6625 35 1 4.7012 -5.3047 0.5155 36 1 2.8257 -4.6425 4.3122 37 1 3.3393 -3.4062 -0.2239 38 1 1.9621 -4.5377 -0.3762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363313311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:07 Heat of formation + Delta-G solvation = 21.388444 kcal Electronic energy + Delta-G solvation = -23468.109247 eV Core-core repulsion = 19926.914504 eV Total energy + Delta-G solvation = -3541.194743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59103 -40.42680 -38.66559 -36.27806 -34.96573 -33.28918 -32.41489 -31.36616 -28.91852 -27.79839 -27.64989 -25.98530 -23.96323 -22.80273 -22.00219 -21.10805 -19.41122 -18.67824 -18.14131 -17.08237 -16.56210 -16.31214 -15.69292 -15.31625 -15.11282 -14.73318 -14.58691 -14.29329 -14.23494 -13.74297 -13.35259 -13.03191 -12.90928 -12.77245 -12.35678 -12.04640 -11.94912 -11.54989 -11.43707 -11.21743 -11.08302 -10.93562 -10.61367 -10.40523 -10.19201 -9.86952 -9.74879 -9.67870 -9.03371 -8.47257 -7.74804 -7.74225 -6.07875 -4.13276 1.70753 2.21397 2.50432 3.03005 3.13996 3.21468 3.27730 3.34996 3.38609 3.74668 4.18632 4.29160 4.41308 4.71687 4.78830 4.85390 4.96056 5.25099 5.28102 5.32299 5.42426 5.44302 5.57457 5.60318 5.69850 5.75808 5.85438 6.03017 6.16415 6.74051 6.96698 6.98729 7.12982 7.38600 7.45092 7.50287 7.87534 8.08597 8.17998 8.29980 8.82555 8.97607 9.51999 11.00284 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.003977 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.385792 B = 7038.492405 C = 7610.166262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.509 3.491 13 O -0.531 6.531 14 C -0.125 4.125 15 H 0.125 0.875 16 C -0.147 4.147 17 C 0.517 3.483 18 O -0.529 6.529 19 N -0.528 5.528 20 C 0.016 3.984 21 C 0.046 3.954 22 N -0.281 5.281 23 N -0.476 5.476 24 H 0.444 0.556 25 C 0.038 3.962 26 C 0.115 3.885 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.188 0.812 36 H 0.191 0.809 37 H 0.105 0.895 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -16.946 3.880 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.295 3.705 13 O -0.408 6.408 14 C -0.147 4.147 15 H 0.143 0.857 16 C -0.187 4.187 17 C 0.306 3.694 18 O -0.406 6.406 19 N -0.254 5.254 20 C -0.087 4.087 21 C -0.142 4.142 22 N -0.104 5.104 23 N -0.188 5.188 24 H 0.288 0.712 25 C -0.110 4.110 26 C -0.008 4.008 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.205 0.795 36 H 0.207 0.793 37 H 0.124 0.876 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.248 -17.480 4.755 18.859 hybrid contribution -0.484 0.914 -0.836 1.330 sum -5.731 -16.565 3.919 17.961 Atomic orbital electron populations 1.21786 0.81397 1.02872 1.00470 1.48108 1.06214 1.07701 1.70889 1.19322 0.92563 0.77879 0.97617 1.21405 1.36766 1.06340 0.92172 0.92376 1.24944 0.95300 0.96394 0.97461 1.69933 1.38229 1.14314 1.30786 0.86487 0.77706 0.78606 0.84555 1.20635 1.21092 1.19859 1.19890 0.87951 0.84713 0.77991 1.90693 1.13596 1.86716 1.49831 1.22369 0.97522 0.94602 1.00214 0.85723 1.22480 0.98522 1.03507 0.94162 1.20915 0.81327 0.78814 0.88329 1.90644 1.73561 1.61900 1.14485 1.45117 1.23220 1.48268 1.08785 1.17580 0.94965 1.04593 0.91514 1.23699 0.92703 0.97670 1.00176 1.77243 1.20673 1.23615 0.88837 1.46103 1.20913 1.43030 1.08752 0.71198 1.22504 0.92892 0.98213 0.97417 1.22143 1.02819 0.96415 0.79400 0.93415 0.90533 0.92159 0.94885 0.93838 0.92658 0.86607 0.86636 0.79508 0.79269 0.87641 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 8.99 59.85 0.54 1.64 16 2 N -0.60 -11.75 2.84 -182.96 -0.52 -12.27 16 3 C 0.25 6.22 5.16 -5.20 -0.03 6.19 16 4 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 5 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.51 9.62 7.08 -10.98 -0.08 9.54 16 13 O -0.53 -12.54 15.09 5.56 0.08 -12.45 16 14 C -0.13 -1.54 2.57 -90.14 -0.23 -1.77 16 15 H 0.12 1.12 7.57 -51.93 -0.39 0.73 16 16 C -0.15 -1.63 5.58 -26.74 -0.15 -1.78 16 17 C 0.52 7.49 7.98 -10.86 -0.09 7.40 16 18 O -0.53 -8.90 15.64 5.54 0.09 -8.82 16 19 N -0.53 -7.25 3.16 -112.48 -0.36 -7.61 16 20 C 0.02 0.22 6.80 -83.88 -0.57 -0.35 16 21 C 0.05 0.59 11.53 -17.22 -0.20 0.39 16 22 N -0.28 -3.68 12.69 30.71 0.39 -3.29 16 23 N -0.48 -5.27 7.40 30.69 0.23 -5.04 16 24 H 0.44 3.27 8.96 -182.62 -1.64 1.63 16 25 C 0.04 0.48 11.18 -16.68 -0.19 0.30 16 26 C 0.11 1.35 6.30 -3.13 -0.02 1.33 16 27 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 28 H 0.08 1.12 8.07 -51.93 -0.42 0.71 16 29 H 0.06 0.62 6.28 -51.93 -0.33 0.30 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.12 1.38 5.46 -51.93 -0.28 1.10 16 35 H 0.19 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.19 2.37 6.51 -52.48 -0.34 2.02 16 37 H 0.11 1.43 6.94 -51.93 -0.36 1.07 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -36.51 321.62 -6.69 -43.20 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.74 Total: 0.92 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -1.43 Total: 9.68 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.48 Total: -53.74 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.17 Total: -21.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.51 -6.69 -43.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363313311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.591 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds