Wall clock time and date at job start Tue Mar 31 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 120.00318 * 2 1 4 4 C 1.50693 * 109.47317 * 270.00375 * 3 2 1 5 5 H 1.08005 * 119.99853 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00308 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99716 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00447 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47163 * 90.00298 * 8 6 4 10 10 H 1.48499 * 109.47388 * 210.00299 * 8 6 4 11 11 H 1.48502 * 109.46772 * 330.00078 * 8 6 4 12 12 C 1.34777 * 120.00022 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00270 * 179.97438 * 12 2 1 14 14 C 1.50705 * 120.00046 * 359.97438 * 12 2 1 15 15 H 1.09001 * 110.88345 * 62.35570 * 14 12 2 16 16 C 1.54625 * 110.96846 * 298.54945 * 14 12 2 17 17 C 1.51286 * 104.19405 * 266.67749 * 16 14 12 18 18 O 1.21305 * 124.94364 * 163.78320 * 17 16 14 19 19 N 1.34417 * 110.11297 * 343.74897 * 17 16 14 20 20 C 1.40762 * 124.34661 * 179.57357 * 19 17 16 21 21 C 1.40260 * 126.08165 * 179.71356 * 20 19 17 22 22 N 1.30830 * 108.33423 * 179.81823 * 21 20 19 23 23 N 1.40066 * 108.36936 * 0.43814 * 22 21 20 24 24 H 0.97002 * 126.05182 * 179.69873 * 23 22 21 25 25 C 1.35752 * 126.08205 * 0.02562 * 20 19 17 26 26 C 1.46761 * 111.30293 * 359.59072 * 19 17 16 27 27 H 1.08994 * 109.46868 * 269.99890 * 1 2 3 28 28 H 1.09005 * 109.47030 * 29.99629 * 1 2 3 29 29 H 1.08996 * 109.47462 * 149.99723 * 1 2 3 30 30 H 1.08999 * 109.46964 * 30.00475 * 3 2 1 31 31 H 1.08997 * 109.47312 * 150.00049 * 3 2 1 32 32 H 0.96997 * 119.99991 * 179.97438 * 7 6 4 33 33 H 1.09001 * 110.48978 * 147.99721 * 16 14 12 34 34 H 1.09000 * 110.49031 * 25.35151 * 16 14 12 35 35 H 1.08001 * 125.82589 * 359.97438 * 21 20 19 36 36 H 1.08004 * 126.21825 * 359.97438 * 25 20 19 37 37 H 1.08998 * 110.24663 * 136.02095 * 26 19 17 38 38 H 1.09002 * 110.24657 * 258.02169 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6730 8 14 3.4380 3.4170 -3.4338 9 1 2.3079 4.2593 -3.9012 10 1 4.6980 4.2003 -3.4960 11 1 3.5561 2.2196 -4.3043 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.7815 -2.5724 -0.9025 16 6 0.5116 -2.6068 1.2681 17 6 1.3890 -3.3583 2.2449 18 8 1.1960 -3.4283 3.4404 19 7 2.4131 -3.9378 1.5951 20 6 3.4165 -4.7043 2.2172 21 6 4.4961 -5.3288 1.5755 22 7 5.2138 -5.9427 2.4809 23 7 4.6142 -5.7413 3.7306 24 1 4.9323 -6.0878 4.5789 25 6 3.5081 -4.9756 3.5442 26 6 2.3510 -3.6682 0.1538 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6086 2.0283 0.5139 31 1 3.1500 1.1384 0.5138 32 1 4.0303 4.4439 -0.8502 33 1 -0.3919 -3.1765 1.0505 34 1 0.2576 -1.6229 1.6625 35 1 4.7012 -5.3047 0.5155 36 1 2.8257 -4.6425 4.3122 37 1 3.3393 -3.4062 -0.2239 38 1 1.9621 -4.5377 -0.3762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363313311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:07 Heat of formation + Delta-G solvation = -6.341968 kcal Electronic energy + Delta-G solvation = -23469.311728 eV Core-core repulsion = 19926.914504 eV Total energy + Delta-G solvation = -3542.397223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.59198 -41.52630 -40.02539 -37.42265 -36.57677 -34.88012 -33.91420 -32.33997 -30.26412 -29.18364 -28.76502 -27.32959 -25.60541 -23.83644 -23.37183 -22.14277 -20.42890 -20.01127 -19.14282 -18.70388 -18.21383 -17.42073 -17.11073 -16.72602 -16.24008 -16.17104 -15.81810 -15.51849 -15.42728 -14.80481 -14.57284 -14.41647 -14.10465 -13.89416 -13.75585 -13.41844 -13.28914 -13.05991 -12.81307 -12.62838 -12.48818 -12.37237 -12.17403 -12.07663 -11.67994 -11.38491 -10.93513 -10.71786 -10.62474 -10.54374 -9.38933 -8.75043 -8.20285 -6.35469 0.71367 1.19423 1.39365 1.42400 1.52500 1.59561 1.82135 2.04225 2.21703 2.30944 2.46202 3.09847 3.24051 3.31356 3.64789 3.81766 3.90020 3.98452 4.32877 4.45642 4.50434 4.58785 4.59699 4.72515 4.77032 4.83366 4.86634 5.04189 5.08620 5.11491 5.25433 5.58519 5.75505 5.85443 6.01314 6.07377 6.26968 6.56825 6.72361 6.81692 7.04760 7.30660 7.49566 8.86895 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.003977 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.385792 B = 7038.492405 C = 7610.166262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.606 5.606 3 C 0.259 3.741 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.497 3.503 13 O -0.592 6.592 14 C -0.108 4.108 15 H 0.176 0.824 16 C -0.134 4.134 17 C 0.500 3.500 18 O -0.565 6.565 19 N -0.531 5.531 20 C -0.011 4.011 21 C 0.043 3.957 22 N -0.299 5.299 23 N -0.463 5.463 24 H 0.457 0.543 25 C 0.036 3.964 26 C 0.112 3.888 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.020 0.980 31 H -0.009 1.009 32 H 0.266 0.734 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.208 0.792 36 H 0.190 0.810 37 H 0.082 0.918 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -18.561 1.988 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.337 5.337 3 C 0.137 3.863 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.285 3.715 13 O -0.473 6.473 14 C -0.129 4.129 15 H 0.193 0.807 16 C -0.174 4.174 17 C 0.291 3.709 18 O -0.444 6.444 19 N -0.257 5.257 20 C -0.114 4.114 21 C -0.145 4.145 22 N -0.122 5.122 23 N -0.177 5.177 24 H 0.305 0.695 25 C -0.113 4.113 26 C -0.009 4.009 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.038 0.962 31 H 0.009 0.991 32 H 0.074 0.926 33 H 0.186 0.814 34 H 0.127 0.873 35 H 0.224 0.776 36 H 0.207 0.793 37 H 0.100 0.900 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.457 -19.130 2.860 20.730 hybrid contribution 0.233 1.400 -0.154 1.427 sum -7.223 -17.730 2.706 19.335 Atomic orbital electron populations 1.22140 0.77593 1.04805 1.02517 1.48111 1.08549 1.06118 1.70905 1.18723 0.90859 0.80595 0.96096 1.21725 1.36565 1.06415 0.93005 0.92100 1.25909 0.94991 0.96564 1.01971 1.70072 1.39128 1.14840 1.33221 0.85383 0.77845 0.78332 0.79062 1.18853 1.21181 1.19223 1.21137 0.87738 0.86519 0.76083 1.90665 1.16638 1.87838 1.52206 1.22399 0.97416 0.90119 1.02977 0.80685 1.22576 0.99315 1.03408 0.92069 1.21623 0.81919 0.78889 0.88518 1.90620 1.74573 1.63235 1.16004 1.45313 1.22857 1.47823 1.09665 1.17919 0.95822 1.05486 0.92146 1.24037 0.92175 0.97124 1.01127 1.77198 1.21234 1.24250 0.89523 1.46140 1.20185 1.42314 1.09061 0.69485 1.22587 0.93173 0.98154 0.97400 1.22368 1.01950 0.97981 0.78633 0.91300 0.91603 0.87231 0.96183 0.99090 0.92558 0.81357 0.87304 0.77573 0.79301 0.89975 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.78 8.99 127.77 1.15 2.93 16 2 N -0.61 -23.58 2.84 -851.15 -2.41 -25.99 16 3 C 0.26 13.68 5.16 85.63 0.44 14.12 16 4 C -0.54 -30.09 9.39 25.60 0.24 -29.85 16 5 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 6 C 0.00 0.24 5.46 84.65 0.46 0.70 16 7 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 C 0.50 18.41 7.08 87.66 0.62 19.03 16 13 O -0.59 -28.89 15.09 -3.03 -0.05 -28.94 16 14 C -0.11 -2.24 2.57 -10.48 -0.03 -2.26 16 15 H 0.18 1.95 7.57 -2.39 -0.02 1.93 16 16 C -0.13 -2.44 5.58 30.59 0.17 -2.27 16 17 C 0.50 13.62 7.98 87.90 0.70 14.32 16 18 O -0.56 -18.72 15.64 -3.11 -0.05 -18.77 16 19 N -0.53 -13.78 3.16 -628.37 -1.99 -15.77 16 20 C -0.01 -0.30 6.80 37.62 0.26 -0.04 16 21 C 0.04 1.08 11.53 85.33 0.98 2.06 16 22 N -0.30 -7.67 12.69 -56.77 -0.72 -8.39 16 23 N -0.46 -10.06 7.40 -56.81 -0.42 -10.48 16 24 H 0.46 6.51 8.96 -213.34 -1.91 4.60 16 25 C 0.04 0.92 11.18 83.50 0.93 1.85 16 26 C 0.11 2.31 6.30 86.83 0.55 2.86 16 27 H 0.07 1.45 6.91 -2.39 -0.02 1.44 16 28 H 0.07 1.80 8.07 -2.38 -0.02 1.79 16 29 H 0.11 1.65 6.28 -2.39 -0.02 1.64 16 30 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 31 H -0.01 -0.57 7.42 -2.39 -0.02 -0.58 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.17 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 2.23 5.46 -2.39 -0.01 2.21 16 35 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.19 4.80 6.51 -2.91 -0.02 4.78 16 37 H 0.08 2.15 6.94 -2.39 -0.02 2.13 16 38 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -85.78 321.62 2.35 -83.43 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.80 Total: 11.66 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 6.48 Total: 23.44 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -5.26 Total: -116.79 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.09 Total: -47.71 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -85.78 2.35 -83.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363313311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.087 kcal (2) G-P(sol) polarization free energy of solvation -85.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds