Wall clock time and date at job start Tue Mar 31 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.08991 * 110.64495 * 54.29986 * 4 3 2 6 6 C 1.55158 * 110.72064 * 291.15370 * 4 3 2 7 7 C 1.54907 * 101.58453 * 206.13723 * 6 4 3 8 8 N 1.47428 * 104.83127 * 37.01188 * 7 6 4 9 9 S 1.65598 * 125.64921 * 155.91019 * 8 7 6 10 10 O 1.42102 * 106.40266 * 203.51254 * 9 8 7 11 11 O 1.42100 * 106.40102 * 336.43544 * 9 8 7 12 12 N 1.65607 * 107.21747 * 89.97533 * 9 8 7 13 13 C 1.46499 * 119.99671 * 270.00023 * 12 9 8 14 14 C 1.46493 * 120.00263 * 89.99890 * 12 9 8 15 15 C 1.50700 * 109.47331 * 94.99840 * 14 12 9 16 16 H 1.08002 * 119.99851 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00273 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00141 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00006 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47179 * 119.99709 * 19 17 15 22 22 H 1.48505 * 109.47006 * 239.99847 * 19 17 15 23 23 C 1.47327 * 108.73431 * 335.71593 * 8 7 6 24 24 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 27 27 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 28 28 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 29 29 H 1.09004 * 111.00359 * 324.21566 * 6 4 3 30 30 H 1.09001 * 111.00250 * 88.02124 * 6 4 3 31 31 H 1.08999 * 110.36562 * 155.84913 * 7 6 4 32 32 H 1.08993 * 110.36723 * 278.17090 * 7 6 4 33 33 H 1.08999 * 109.47169 * 89.99839 * 13 12 9 34 34 H 1.09004 * 109.46826 * 209.99999 * 13 12 9 35 35 H 1.09001 * 109.47528 * 329.99718 * 13 12 9 36 36 H 1.08995 * 109.47405 * 215.00314 * 14 12 9 37 37 H 1.09002 * 109.47051 * 335.00010 * 14 12 9 38 38 H 0.96997 * 120.00282 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.05839 * 241.87577 * 23 8 7 40 40 H 1.08994 * 109.85081 * 120.61271 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8711 0.5612 -0.8292 6 6 4.0418 0.6190 1.3525 7 6 5.4765 1.2000 1.4151 8 7 5.3635 2.5483 0.8295 9 16 6.3858 3.8172 1.1243 10 8 5.6496 4.9995 0.8424 11 8 6.9913 3.5604 2.3840 12 7 7.5982 3.7417 -0.0013 13 6 8.8154 2.9779 0.2833 14 6 7.4534 4.4387 -1.2817 15 6 8.1091 5.7927 -1.1936 16 1 8.5864 6.1028 -0.2757 17 6 8.0998 6.6356 -2.2846 18 7 7.5191 6.2578 -3.4024 19 14 8.9133 8.3136 -2.1755 20 1 9.4912 8.4964 -0.8199 21 1 9.9926 8.4075 -3.1910 22 1 7.9021 9.3713 -2.4287 23 6 4.1934 2.5791 -0.0651 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.4353 0.9856 2.1807 30 1 4.0612 -0.4707 1.3376 31 1 5.8156 1.2626 2.4491 32 1 6.1598 0.5872 0.8273 33 1 8.6863 1.9495 -0.0540 34 1 9.6582 3.4290 -0.2404 35 1 9.0075 2.9869 1.3563 36 1 7.9298 3.8548 -2.0691 37 1 6.3949 4.5619 -1.5106 38 1 7.5122 6.8509 -4.1699 39 1 4.5090 2.7932 -1.0862 40 1 3.4882 3.3379 0.2740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408213690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:33 Heat of formation + Delta-G solvation = -118.231000 kcal Electronic energy + Delta-G solvation = -22552.567795 eV Core-core repulsion = 19108.469900 eV Total energy + Delta-G solvation = -3444.097896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.01542 -37.35264 -36.62196 -35.46828 -35.14681 -32.43177 -31.80215 -29.42385 -27.76663 -27.14325 -25.05973 -24.81353 -22.40588 -22.10228 -20.48361 -18.53672 -17.38455 -17.10355 -16.57127 -16.32316 -16.03536 -15.56704 -15.41398 -14.69369 -14.46850 -13.86387 -13.56010 -13.42538 -13.22311 -12.95411 -12.72409 -12.34947 -12.19333 -12.12176 -11.72976 -11.62627 -11.52581 -11.21758 -11.13730 -11.12703 -11.08018 -10.87292 -10.71652 -10.69140 -10.51720 -10.02916 -9.84743 -9.73885 -8.81679 -8.44551 -8.04863 -6.06801 -4.10677 1.16106 3.30981 3.38466 3.42120 3.44936 3.58740 4.10760 4.44624 4.46936 4.57834 4.77338 4.97887 5.09634 5.10898 5.23472 5.27613 5.29474 5.34708 5.42126 5.46658 5.57378 5.65098 5.68380 5.84845 5.91293 5.99247 6.02407 6.18975 6.22352 6.38548 6.48918 6.65726 6.94425 7.22433 7.40256 7.61236 7.91000 8.20281 8.92054 9.54628 11.01838 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.004442 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.365651 B = 6301.814036 C = 7037.265130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.069 3.931 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.117 4.117 7 C 0.116 3.884 8 N -1.024 6.024 9 S 2.794 3.206 10 O -0.959 6.959 11 O -0.993 6.993 12 N -0.996 5.996 13 C 0.096 3.904 14 C 0.257 3.743 15 C -0.528 4.528 16 H 0.061 0.939 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.129 3.871 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.074 0.926 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 -13.875 6.158 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.008 4.008 4 C -0.116 4.116 5 H 0.112 0.888 6 C -0.156 4.156 7 C -0.010 4.010 8 N -0.862 5.862 9 S 2.803 3.197 10 O -0.943 6.943 11 O -0.978 6.978 12 N -0.839 5.839 13 C -0.051 4.051 14 C 0.135 3.865 15 C -0.568 4.568 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.003 3.997 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.688 -13.245 6.671 17.714 hybrid contribution 0.261 0.931 -0.506 1.092 sum -9.426 -12.314 6.164 16.688 Atomic orbital electron populations 1.22728 0.81128 1.02595 1.00028 1.87858 1.19545 1.28031 1.95453 1.22546 0.92900 0.84596 1.00740 1.22190 0.93035 0.96859 0.99534 0.88834 1.22764 0.95288 1.00818 0.96731 1.21987 0.97582 0.82762 0.98672 1.59471 1.41502 1.26466 1.58801 1.01610 0.72648 0.72418 0.73010 1.93620 1.71977 1.43496 1.85200 1.93513 1.77062 1.86133 1.41058 1.57698 1.28812 1.63174 1.34179 1.21337 0.88508 0.94241 1.00974 1.19051 0.97736 0.91290 0.78425 1.21536 1.36091 1.00495 0.98645 0.92126 1.24931 0.95401 0.98549 0.95149 1.69923 1.43936 1.37017 1.02626 0.86453 0.79081 0.83853 0.78134 1.19627 1.20947 1.20786 1.21609 0.87239 0.96432 0.94416 0.94042 0.89750 0.94139 0.92826 0.92682 0.90788 0.89836 0.90202 0.91776 0.94351 0.90393 0.91641 0.94760 0.94564 0.92747 0.90766 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.11 10.60 -35.23 -0.37 -4.49 16 3 C 0.07 0.70 5.22 37.16 0.19 0.89 16 4 C -0.10 -1.08 3.21 -88.78 -0.29 -1.36 16 5 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.12 -1.24 6.44 -24.58 -0.16 -1.39 16 7 C 0.12 1.46 7.10 -2.53 -0.02 1.44 16 8 N -1.02 -16.33 3.76 -111.19 -0.42 -16.75 16 9 S 2.79 57.37 6.31 -107.50 -0.68 56.69 16 10 O -0.96 -23.35 16.69 -57.17 -0.95 -24.30 16 11 O -0.99 -21.15 16.06 -57.17 -0.92 -22.07 16 12 N -1.00 -21.20 3.23 -123.06 -0.40 -21.59 16 13 C 0.10 1.69 10.68 59.85 0.64 2.33 16 14 C 0.26 6.50 5.08 -5.20 -0.03 6.48 16 15 C -0.53 -14.98 9.38 -34.44 -0.32 -15.31 16 16 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.13 1.83 6.61 -2.90 -0.02 1.81 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.51 8.06 -51.93 -0.42 0.10 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.00 7.78 -51.93 -0.40 0.59 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.06 1.09 7.02 -51.93 -0.36 0.73 16 36 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 37 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -33.97 342.84 -8.43 -42.41 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -6.59 Total: -4.48 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 1.02 Total: -2.10 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.08 Total: -63.74 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -2.25 Total: -50.86 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 57.37 SS G_CDS: -0.68 Total: 56.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.97 -8.43 -42.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408213690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.825 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds