Wall clock time and date at job start Tue Mar 31 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.08991 * 110.64495 * 54.29986 * 4 3 2 6 6 C 1.55158 * 110.72064 * 291.15370 * 4 3 2 7 7 C 1.54907 * 101.58453 * 206.13723 * 6 4 3 8 8 N 1.47428 * 104.83127 * 37.01188 * 7 6 4 9 9 S 1.65598 * 125.64921 * 155.91019 * 8 7 6 10 10 O 1.42102 * 106.40266 * 203.51254 * 9 8 7 11 11 O 1.42100 * 106.40102 * 336.43544 * 9 8 7 12 12 N 1.65607 * 107.21747 * 89.97533 * 9 8 7 13 13 C 1.46499 * 119.99671 * 270.00023 * 12 9 8 14 14 C 1.46493 * 120.00263 * 89.99890 * 12 9 8 15 15 C 1.50700 * 109.47331 * 94.99840 * 14 12 9 16 16 H 1.08002 * 119.99851 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00273 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00141 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00006 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47179 * 119.99709 * 19 17 15 22 22 H 1.48505 * 109.47006 * 239.99847 * 19 17 15 23 23 C 1.47327 * 108.73431 * 335.71593 * 8 7 6 24 24 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 25 25 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 27 27 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 28 28 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 29 29 H 1.09004 * 111.00359 * 324.21566 * 6 4 3 30 30 H 1.09001 * 111.00250 * 88.02124 * 6 4 3 31 31 H 1.08999 * 110.36562 * 155.84913 * 7 6 4 32 32 H 1.08993 * 110.36723 * 278.17090 * 7 6 4 33 33 H 1.08999 * 109.47169 * 89.99839 * 13 12 9 34 34 H 1.09004 * 109.46826 * 209.99999 * 13 12 9 35 35 H 1.09001 * 109.47528 * 329.99718 * 13 12 9 36 36 H 1.08995 * 109.47405 * 215.00314 * 14 12 9 37 37 H 1.09002 * 109.47051 * 335.00010 * 14 12 9 38 38 H 0.96997 * 120.00282 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.05839 * 241.87577 * 23 8 7 40 40 H 1.08994 * 109.85081 * 120.61271 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8711 0.5612 -0.8292 6 6 4.0418 0.6190 1.3525 7 6 5.4765 1.2000 1.4151 8 7 5.3635 2.5483 0.8295 9 16 6.3858 3.8172 1.1243 10 8 5.6496 4.9995 0.8424 11 8 6.9913 3.5604 2.3840 12 7 7.5982 3.7417 -0.0013 13 6 8.8154 2.9779 0.2833 14 6 7.4534 4.4387 -1.2817 15 6 8.1091 5.7927 -1.1936 16 1 8.5864 6.1028 -0.2757 17 6 8.0998 6.6356 -2.2846 18 7 7.5191 6.2578 -3.4024 19 14 8.9133 8.3136 -2.1755 20 1 9.4912 8.4964 -0.8199 21 1 9.9926 8.4075 -3.1910 22 1 7.9021 9.3713 -2.4287 23 6 4.1934 2.5791 -0.0651 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.4353 0.9856 2.1807 30 1 4.0612 -0.4707 1.3376 31 1 5.8156 1.2626 2.4491 32 1 6.1598 0.5872 0.8273 33 1 8.6863 1.9495 -0.0540 34 1 9.6582 3.4290 -0.2404 35 1 9.0075 2.9869 1.3563 36 1 7.9298 3.8548 -2.0691 37 1 6.3949 4.5619 -1.5106 38 1 7.5122 6.8509 -4.1699 39 1 4.5090 2.7932 -1.0862 40 1 3.4882 3.3379 0.2740 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408213690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:32 Heat of formation + Delta-G solvation = -143.598292 kcal Electronic energy + Delta-G solvation = -22553.667804 eV Core-core repulsion = 19108.469900 eV Total energy + Delta-G solvation = -3445.197904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96249 -38.34869 -38.20243 -37.23967 -36.89527 -34.52484 -32.82885 -30.43166 -29.68707 -27.86733 -26.80709 -25.68091 -24.23906 -23.29411 -21.41819 -20.00040 -19.04701 -18.54438 -18.27383 -17.72570 -17.12174 -16.76113 -16.42565 -16.37147 -15.58764 -15.32535 -15.03288 -14.78796 -14.41975 -14.13723 -14.07675 -13.95226 -13.69268 -13.37489 -13.21784 -13.05446 -12.99650 -12.96317 -12.67560 -12.49279 -12.42416 -12.37120 -12.09353 -11.99104 -11.74770 -11.71747 -11.58864 -10.62309 -10.56421 -10.06403 -9.79961 -8.22381 -6.34545 -0.43399 1.37523 1.39898 1.51759 1.99524 2.38447 2.55223 2.75277 3.08337 3.27259 3.56845 3.73655 3.97230 4.08961 4.31310 4.34635 4.44817 4.48033 4.51869 4.59682 4.64343 4.68479 4.72994 4.77316 4.90489 4.91194 4.99412 5.04637 5.05822 5.12009 5.15739 5.29250 5.39266 5.51155 5.68258 5.91996 6.08234 6.24355 6.73568 7.34493 8.85407 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.004442 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.365651 B = 6301.814036 C = 7037.265130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.070 3.930 4 C -0.087 4.087 5 H 0.099 0.901 6 C -0.107 4.107 7 C 0.106 3.894 8 N -1.021 6.021 9 S 2.808 3.192 10 O -1.005 7.005 11 O -1.003 7.003 12 N -1.005 6.005 13 C 0.089 3.911 14 C 0.273 3.727 15 C -0.551 4.551 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.268 1.268 22 H -0.278 1.278 23 C 0.121 3.879 24 H 0.046 0.954 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.016 0.984 38 H 0.268 0.732 39 H 0.062 0.938 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -15.108 6.549 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.007 4.007 4 C -0.107 4.107 5 H 0.117 0.883 6 C -0.146 4.146 7 C -0.018 4.018 8 N -0.863 5.863 9 S 2.818 3.182 10 O -0.989 6.989 11 O -0.987 6.987 12 N -0.846 5.846 13 C -0.056 4.056 14 C 0.149 3.851 15 C -0.591 4.591 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.782 3.218 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.204 1.204 23 C -0.005 4.005 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.933 -14.494 7.077 18.943 hybrid contribution 0.284 1.218 -0.603 1.389 sum -9.649 -13.276 6.474 17.643 Atomic orbital electron populations 1.22917 0.79641 1.03817 1.00695 1.87816 1.21182 1.27906 1.95587 1.22489 0.92096 0.84844 1.01227 1.22104 0.93700 0.94664 1.00268 0.88251 1.22765 0.93613 1.01972 0.96283 1.22331 0.99598 0.81020 0.98885 1.59074 1.40954 1.27000 1.59237 1.00862 0.72420 0.72314 0.72577 1.93553 1.72940 1.46688 1.85731 1.93488 1.77504 1.86368 1.41390 1.57619 1.30700 1.63709 1.32614 1.21561 0.86931 0.95478 1.01626 1.18604 0.95953 0.90514 0.79991 1.21854 1.36565 1.02197 0.98439 0.93135 1.25742 0.95923 1.02145 0.94847 1.70005 1.44651 1.38377 1.03191 0.85522 0.78502 0.79379 0.78401 1.19521 1.19337 1.20377 1.21771 0.86683 0.98636 0.93376 0.93506 0.88321 0.93361 0.92334 0.92350 0.90417 0.87567 0.90009 0.90029 0.90987 0.91032 0.90720 0.95429 0.96629 0.92295 0.91913 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.66 10.60 -148.98 -1.58 -9.24 16 3 C 0.07 1.31 5.22 71.98 0.38 1.69 16 4 C -0.09 -1.80 3.21 -9.60 -0.03 -1.83 16 5 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 6 C -0.11 -1.99 6.44 31.99 0.21 -1.78 16 7 C 0.11 2.45 7.10 86.85 0.62 3.06 16 8 N -1.02 -31.93 3.76 -505.71 -1.90 -33.83 16 9 S 2.81 116.05 6.31 -56.49 -0.36 115.70 16 10 O -1.01 -50.37 16.69 -128.00 -2.14 -52.50 16 11 O -1.00 -42.29 16.06 -128.00 -2.06 -44.35 16 12 N -1.00 -42.97 3.23 -543.24 -1.75 -44.72 16 13 C 0.09 3.06 10.68 127.77 1.36 4.43 16 14 C 0.27 14.13 5.08 85.63 0.43 14.56 16 15 C -0.55 -31.81 9.38 25.60 0.24 -31.57 16 16 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 17 C 0.01 0.75 5.46 84.65 0.46 1.21 16 18 N -0.92 -54.28 13.29 21.45 0.28 -53.99 16 19 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 C 0.12 3.39 6.61 86.67 0.57 3.96 16 24 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.06 1.02 8.06 -2.39 -0.02 1.01 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.40 7.98 -2.38 -0.02 1.38 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.87 7.78 -2.39 -0.02 1.86 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 35 H 0.07 2.41 7.02 -2.39 -0.02 2.39 16 36 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 37 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 38 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.91 7.82 -2.39 -0.02 1.89 16 Total: -1.00 -72.70 342.84 -0.98 -73.68 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.00 Total: 6.93 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.49 Total: -4.70 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -3.37 Total: -132.55 kcal Atomic # 8 Polarization: -100.32 SS G_CDS: -5.77 Total: -106.09 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 116.05 SS G_CDS: -0.36 Total: 115.70 kcal Total: -72.70 -0.98 -73.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408213690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.922 kcal (2) G-P(sol) polarization free energy of solvation -72.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds