Wall clock time and date at job start Tue Mar 31 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99958 * 2 1 4 4 C 1.50701 * 109.46940 * 275.00055 * 3 2 1 5 5 H 1.08007 * 120.00083 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00384 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00435 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99575 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.46909 * 90.00152 * 8 6 4 10 10 H 1.48504 * 109.46929 * 210.00145 * 8 6 4 11 11 H 1.48499 * 109.47219 * 330.00161 * 8 6 4 12 12 S 1.65600 * 120.00262 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40453 * 336.46486 * 12 2 1 14 14 O 1.42099 * 106.40260 * 203.53951 * 12 2 1 15 15 N 1.65610 * 107.21432 * 89.99966 * 12 2 1 16 16 C 1.46927 * 120.63342 * 269.98002 * 15 12 2 17 17 C 1.53192 * 108.77478 * 126.41166 * 16 15 12 18 18 C 1.53038 * 109.31104 * 54.63468 * 17 16 15 19 19 C 1.53037 * 109.54260 * 298.63478 * 18 17 16 20 20 H 1.09005 * 109.51689 * 301.39933 * 19 18 17 21 21 C 1.52997 * 109.49864 * 181.31836 * 19 18 17 22 22 O 1.42898 * 109.47319 * 65.16115 * 21 19 18 23 23 C 1.46921 * 120.62762 * 90.00014 * 15 12 2 24 24 H 1.09003 * 109.46924 * 270.00453 * 1 2 3 25 25 H 1.08997 * 109.47377 * 30.00191 * 1 2 3 26 26 H 1.09004 * 109.46911 * 150.00717 * 1 2 3 27 27 H 1.09000 * 109.47187 * 34.99917 * 3 2 1 28 28 H 1.08991 * 109.47423 * 154.99704 * 3 2 1 29 29 H 0.97000 * 120.00456 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.58558 * 246.20498 * 16 15 12 31 31 H 1.09005 * 109.58316 * 6.48463 * 16 15 12 32 32 H 1.08998 * 109.49273 * 174.58538 * 17 16 15 33 33 H 1.09000 * 109.49729 * 294.68415 * 17 16 15 34 34 H 1.08997 * 109.45671 * 178.60807 * 18 17 16 35 35 H 1.09004 * 109.45992 * 58.65782 * 18 17 16 36 36 H 1.09002 * 109.47153 * 305.15807 * 21 19 18 37 37 H 1.09001 * 109.46832 * 185.15998 * 21 19 18 38 38 H 0.96701 * 113.99881 * 180.02562 * 22 21 19 39 39 H 1.09005 * 109.58655 * 113.79625 * 23 15 12 40 40 H 1.09002 * 109.70647 * 353.44767 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2333 6 6 3.0006 2.9503 -1.6666 7 7 3.1257 3.3842 -2.9017 8 14 3.7147 3.9398 -0.2522 9 1 5.1116 3.5042 0.0009 10 1 3.7018 5.3830 -0.6016 11 1 2.8984 3.7186 0.9685 12 16 2.2931 -1.4341 0.0006 13 8 1.4115 -2.4063 0.5454 14 8 3.5760 -1.1564 0.5449 15 7 2.5381 -1.8593 -1.5811 16 6 1.5543 -2.6840 -2.2957 17 6 1.1557 -1.9662 -3.5890 18 6 2.4143 -1.6462 -4.3987 19 6 3.3207 -0.7157 -3.5896 20 1 2.7796 0.1987 -3.3462 21 6 4.5631 -0.3701 -4.4130 22 8 4.1778 0.3880 -5.5614 23 6 3.7438 -1.4192 -2.2963 24 1 -0.3633 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5137 27 1 1.6501 2.0043 0.5894 28 1 3.1857 1.1178 0.4343 29 1 3.5891 4.2178 -3.0784 30 1 1.9943 -3.6519 -2.5355 31 1 0.6741 -2.8279 -1.6690 32 1 0.5000 -2.6101 -4.1751 33 1 0.6346 -1.0404 -3.3455 34 1 2.1317 -1.1575 -5.3311 35 1 2.9481 -2.5703 -4.6207 36 1 5.0546 -1.2891 -4.7323 37 1 5.2507 0.2169 -3.8041 38 1 4.9168 0.6422 -6.1309 39 1 4.3624 -2.2841 -2.5362 40 1 4.3094 -0.7274 -1.6721 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408434307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:21 Heat of formation + Delta-G solvation = -126.339695 kcal Electronic energy + Delta-G solvation = -24068.977786 eV Core-core repulsion = 20624.528271 eV Total energy + Delta-G solvation = -3444.449515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.48775 -36.79525 -36.00346 -35.59878 -35.29376 -32.44185 -32.10453 -31.21534 -28.37927 -25.53046 -25.15414 -24.05757 -21.92912 -21.67620 -19.63088 -18.35492 -17.42257 -16.92326 -16.81545 -16.69906 -15.71337 -14.73302 -14.61277 -14.14326 -14.04761 -14.00761 -13.60627 -13.31650 -13.07897 -12.67786 -12.51392 -12.38965 -12.31450 -11.87383 -11.81215 -11.45898 -11.37302 -11.33099 -11.23304 -10.82288 -10.75004 -10.56713 -10.34817 -10.21133 -10.09710 -10.03174 -9.52928 -9.25587 -8.65384 -8.57282 -8.04539 -6.11365 -4.13228 1.19784 3.25974 3.32326 3.36914 3.40475 4.06879 4.36125 4.65764 4.93812 4.97450 5.19026 5.24410 5.27451 5.45325 5.55637 5.66573 5.70577 5.76174 5.80926 5.93954 6.01501 6.07719 6.10155 6.15077 6.21653 6.29301 6.44355 6.53061 6.62448 6.72748 6.83024 6.93640 7.12103 7.14576 7.41533 7.58833 8.12230 8.43755 8.91931 9.47414 10.98255 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.012231 B = 0.010318 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.630508 B = 2712.996124 C = 4188.036698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.992 5.992 3 C 0.213 3.787 4 C -0.545 4.545 5 H 0.089 0.911 6 C 0.080 3.920 7 N -0.881 5.881 8 Si 0.863 3.137 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.265 1.265 12 S 2.788 3.212 13 O -0.996 6.996 14 O -0.980 6.980 15 N -0.999 5.999 16 C 0.125 3.875 17 C -0.134 4.134 18 C -0.102 4.102 19 C -0.114 4.114 20 H 0.124 0.876 21 C 0.092 3.908 22 O -0.561 6.561 23 C 0.140 3.860 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.030 0.970 37 H 0.047 0.953 38 H 0.369 0.631 39 H 0.057 0.943 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -9.194 -2.289 9.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.833 5.833 3 C 0.090 3.910 4 C -0.584 4.584 5 H 0.107 0.893 6 C -0.124 4.124 7 N -0.518 5.518 8 Si 0.690 3.310 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.190 1.190 12 S 2.797 3.203 13 O -0.981 6.981 14 O -0.965 6.965 15 N -0.838 5.838 16 C -0.001 4.001 17 C -0.173 4.173 18 C -0.140 4.140 19 C -0.133 4.133 20 H 0.142 0.858 21 C 0.013 3.987 22 O -0.364 6.364 23 C 0.014 3.986 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.214 0.786 39 H 0.075 0.925 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.149 -9.618 -1.336 9.778 hybrid contribution 0.896 1.048 -0.034 1.379 sum -0.252 -8.570 -1.370 8.683 Atomic orbital electron populations 1.21236 0.79738 1.02446 1.00566 1.57464 1.14330 1.22736 1.88750 1.19606 0.91896 0.80866 0.98669 1.21508 1.37489 1.07600 0.91773 0.89326 1.24821 0.95389 0.97034 0.95156 1.69915 1.41800 1.21678 1.18420 0.87060 0.80513 0.79823 0.83625 1.19909 1.21185 1.18984 1.01698 0.72984 0.72610 0.72997 1.93532 1.67341 1.60129 1.77051 1.93551 1.40846 1.85323 1.76745 1.58072 1.29598 1.64630 1.31453 1.21326 0.91413 0.93294 0.94039 1.21907 0.98174 1.01168 0.96022 1.21399 0.95588 0.98417 0.98576 1.21702 0.96525 1.01615 0.93456 0.85813 1.21979 0.96473 0.93098 0.87105 1.86561 1.36974 1.75193 1.37697 1.21160 0.85402 0.98122 0.93881 0.93761 0.90578 0.92722 0.94770 0.94168 0.92649 0.91838 0.89989 0.91612 0.90928 0.91434 0.93154 0.95142 0.93471 0.78570 0.92500 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 10.31 59.85 0.62 2.40 16 2 N -0.99 -19.84 3.23 -123.05 -0.40 -20.24 16 3 C 0.21 4.88 4.48 -5.19 -0.02 4.85 16 4 C -0.55 -13.77 9.55 -34.44 -0.33 -14.10 16 5 H 0.09 2.35 5.76 -52.48 -0.30 2.05 16 6 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.88 -24.68 13.96 55.43 0.77 -23.91 16 8 Si 0.86 20.37 27.47 -169.99 -4.67 15.70 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 12 S 2.79 54.84 6.07 -107.50 -0.65 54.19 16 13 O -1.00 -20.04 15.92 -57.17 -0.91 -20.96 16 14 O -0.98 -21.87 15.41 -57.17 -0.88 -22.75 16 15 N -1.00 -17.17 3.35 -113.52 -0.38 -17.55 16 16 C 0.13 1.79 6.38 -3.71 -0.02 1.77 16 17 C -0.13 -1.87 6.08 -26.61 -0.16 -2.04 16 18 C -0.10 -1.54 5.08 -26.69 -0.14 -1.67 16 19 C -0.11 -2.00 2.58 -90.50 -0.23 -2.23 16 20 H 0.12 2.75 5.31 -51.93 -0.28 2.47 16 21 C 0.09 1.50 6.43 37.16 0.24 1.74 16 22 O -0.56 -9.61 13.18 -35.23 -0.46 -10.07 16 23 C 0.14 2.40 5.66 -3.71 -0.02 2.38 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 26 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16 27 H 0.03 0.77 7.17 -51.93 -0.37 0.40 16 28 H 0.04 0.96 6.34 -51.93 -0.33 0.63 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.13 7.12 -51.93 -0.37 0.76 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.37 4.50 9.12 45.56 0.42 4.92 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.81 7.13 -51.93 -0.37 1.44 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -31.40 326.40 -8.21 -39.61 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.38 Total: 5.94 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.17 Total: -4.88 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.00 Total: -61.69 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -2.26 Total: -53.78 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Atomic # 16 Polarization: 54.84 SS G_CDS: -0.65 Total: 54.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.40 -8.21 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408434307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.726 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds