Wall clock time and date at job start Tue Mar 31 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47727 * 38.32055 * 3 2 1 5 5 C 1.36933 * 120.00313 * 270.00557 * 4 3 2 6 6 H 1.08004 * 119.99998 * 188.95693 * 5 4 3 7 7 C 1.38808 * 119.99964 * 8.95195 * 5 4 3 8 8 N 1.31627 * 119.99997 * 25.40366 * 7 5 4 9 9 Si 1.86806 * 120.00202 * 205.39943 * 7 5 4 10 10 H 1.48500 * 109.47042 * 60.00069 * 9 7 5 11 11 H 1.48499 * 109.47287 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46998 * 300.00183 * 9 7 5 13 13 C 1.46501 * 119.99840 * 89.99301 * 4 3 2 14 14 C 1.53007 * 109.46767 * 90.21952 * 13 4 3 15 15 C 1.50705 * 109.47045 * 179.97438 * 14 13 4 16 16 C 1.35353 * 126.74853 * 125.24892 * 15 14 13 17 17 N 1.35307 * 106.17297 * 180.12414 * 16 15 14 18 18 C 1.46499 * 125.86779 * 179.90262 * 17 16 15 19 19 C 1.50694 * 109.47126 * 124.71543 * 18 17 16 20 20 O 1.20827 * 120.00408 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00147 * 179.97438 * 19 18 17 22 22 C 1.45201 * 117.00242 * 179.97438 * 21 19 18 23 23 N 1.28715 * 108.26243 * 359.64484 * 17 16 15 24 24 N 1.28631 * 110.18012 * 0.22366 * 23 17 16 25 25 H 4.40640 * 5.51427 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47367 * 278.32153 * 3 2 1 27 27 H 1.08999 * 109.46977 * 158.32371 * 3 2 1 28 28 H 0.96997 * 119.99837 * 179.97438 * 8 7 5 29 29 H 1.08995 * 109.47501 * 330.22737 * 13 4 3 30 30 H 1.08999 * 109.47173 * 210.22005 * 13 4 3 31 31 H 1.09009 * 109.46510 * 60.00363 * 14 13 4 32 32 H 1.08998 * 109.47321 * 300.00516 * 14 13 4 33 33 H 1.07997 * 126.91013 * 0.02562 * 16 15 14 34 34 H 1.09008 * 109.46967 * 4.71884 * 18 17 16 35 35 H 1.09000 * 109.47568 * 244.72041 * 18 17 16 36 36 H 1.08993 * 109.47265 * 300.00576 * 22 21 19 37 37 H 1.09009 * 109.46777 * 60.00213 * 22 21 19 38 38 H 1.08995 * 109.47139 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.0827 -0.8564 5 6 3.3636 -2.3244 -0.3263 6 1 3.8581 -3.0811 -0.9174 7 6 2.9601 -2.6105 0.9706 8 7 1.9640 -1.9421 1.5125 9 14 3.8307 -3.9440 1.9470 10 1 5.2678 -3.5969 2.0868 11 1 3.2151 -4.0531 3.2940 12 1 3.7017 -5.2417 1.2367 13 6 3.3788 -0.8377 -2.2800 14 6 4.8252 -0.3796 -2.4781 15 6 5.0764 -0.1281 -3.9426 16 6 5.5491 1.0115 -4.4992 17 7 5.6096 0.7834 -5.8315 18 6 6.0623 1.7382 -6.8462 19 6 7.1745 1.1220 -7.6550 20 8 7.5503 0.0002 -7.4094 21 8 7.7473 1.8190 -8.6489 22 6 8.8128 1.1629 -9.3854 23 7 5.2062 -0.4186 -6.0536 24 7 4.8809 -0.9890 -4.9475 25 1 -1.0498 -0.0002 -0.0004 26 1 3.0094 -0.1479 1.0168 27 1 3.0088 0.9558 -0.3796 28 1 1.6818 -2.1423 2.4187 29 1 2.7004 -0.0629 -2.6369 30 1 3.2086 -1.7565 -2.8412 31 1 5.5038 -1.1545 -2.1212 32 1 4.9955 0.5391 -1.9168 33 1 5.8214 1.9206 -3.9837 34 1 6.4261 2.6423 -6.3577 35 1 5.2310 1.9904 -7.5045 36 1 9.6228 0.9075 -8.7022 37 1 8.4282 0.2542 -9.8487 38 1 9.1876 1.8344 -10.1578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491650666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:28 Heat of formation + Delta-G solvation = 86.748403 kcal Electronic energy + Delta-G solvation = -22247.068245 eV Core-core repulsion = 18708.707723 eV Total energy + Delta-G solvation = -3538.360522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.24880 -41.56661 -38.19539 -37.77773 -35.92301 -34.37079 -33.35739 -32.42476 -30.75474 -29.58849 -28.07767 -27.90083 -25.78102 -23.82980 -22.92483 -22.36663 -21.30446 -19.37816 -19.06481 -18.55096 -18.02497 -17.74770 -17.41633 -17.00460 -16.63179 -15.89867 -15.67057 -15.41240 -15.03181 -14.87576 -14.59027 -14.34498 -13.97155 -13.63135 -13.25430 -13.11705 -13.07657 -13.03032 -12.65663 -12.47989 -12.25904 -12.08451 -11.91974 -11.91303 -11.83866 -11.53516 -11.04171 -10.74575 -10.65411 -10.23034 -10.05115 -8.95178 -7.79867 -5.14750 0.52133 0.93977 1.13293 1.50145 1.52491 1.59129 1.60245 1.80297 2.37838 2.58147 2.66316 3.27957 3.34673 3.58762 3.73872 3.81368 4.04304 4.18311 4.19332 4.24914 4.26104 4.28177 4.46433 4.62276 4.68674 4.79144 4.87644 4.98832 5.18027 5.18358 5.34681 5.39509 5.52880 5.61255 5.67598 5.76115 6.30948 6.50390 7.15637 7.42945 7.56051 7.89248 8.28405 9.20867 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.002925 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.111531 B = 9570.944369 C =10300.298070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.125 4.125 3 C 0.268 3.732 4 N -0.603 5.603 5 C -0.266 4.266 6 H 0.069 0.931 7 C -0.045 4.045 8 N -0.912 5.912 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.287 1.287 13 C 0.164 3.836 14 C -0.036 4.036 15 C -0.029 4.029 16 C -0.020 4.020 17 N -0.292 5.292 18 C 0.125 3.875 19 C 0.448 3.552 20 O -0.529 6.529 21 O -0.348 6.348 22 C 0.030 3.970 23 N -0.106 5.106 24 N -0.306 5.306 25 H 0.218 0.782 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.247 0.753 29 H 0.043 0.957 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.248 0.752 34 H 0.204 0.796 35 H 0.173 0.827 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 17.301 -18.612 28.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.128 4.128 3 C 0.143 3.857 4 N -0.323 5.323 5 C -0.396 4.396 6 H 0.087 0.913 7 C -0.241 4.241 8 N -0.557 5.557 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.214 1.214 13 C 0.038 3.962 14 C -0.078 4.078 15 C -0.167 4.167 16 C -0.170 4.170 17 N -0.087 5.087 18 C 0.004 3.996 19 C 0.290 3.710 20 O -0.417 6.417 21 O -0.263 6.263 22 C -0.063 4.063 23 N -0.084 5.084 24 N -0.174 5.174 25 H 0.234 0.766 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.264 0.736 34 H 0.221 0.779 35 H 0.190 0.810 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.110 15.856 -19.545 27.930 hybrid contribution 0.226 -0.849 1.272 1.546 sum 12.335 15.007 -18.273 26.670 Atomic orbital electron populations 1.24967 0.96427 1.05943 1.05305 1.24861 0.96363 0.95476 0.96145 1.17934 0.82477 0.89362 0.95919 1.44361 1.75284 1.07963 1.04688 1.19395 1.31799 0.91485 0.96909 0.91330 1.25387 0.97918 1.01250 0.99515 1.70325 1.25152 1.45402 1.14847 0.85529 0.79017 0.79309 0.77738 1.20339 1.22238 1.21384 1.20648 0.94042 0.98013 0.83527 1.20354 0.98439 1.02870 0.86110 1.22351 1.05029 0.91991 0.97377 1.24056 1.06887 1.03486 0.82542 1.47120 1.42547 1.11180 1.07835 1.21930 0.96895 0.90378 0.90378 1.23919 0.82981 0.84372 0.79699 1.90835 1.62178 1.21126 1.67558 1.86453 1.49561 1.46495 1.43812 1.23582 0.87141 0.99571 0.95961 1.78294 1.16243 0.93089 1.20805 1.75062 1.18710 1.27504 0.96106 0.76555 0.90961 0.90657 0.94329 0.93816 0.95599 0.92100 0.87849 0.73627 0.77864 0.80994 0.92162 0.92505 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.25 19.25 74.32 1.43 -12.82 16 2 C -0.13 -6.21 11.46 31.12 0.36 -5.85 16 3 C 0.27 12.56 5.46 84.57 0.46 13.02 16 4 N -0.60 -29.74 2.49 -712.57 -1.77 -31.52 16 5 C -0.27 -14.77 9.69 84.03 0.81 -13.96 16 6 H 0.07 3.85 7.95 -2.91 -0.02 3.83 16 7 C -0.04 -2.51 4.88 84.86 0.41 -2.09 16 8 N -0.91 -52.97 9.19 21.65 0.20 -52.77 16 9 Si 0.95 45.70 29.62 68.60 2.03 47.73 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 13 C 0.16 6.90 5.65 86.38 0.49 7.39 16 14 C -0.04 -1.22 6.12 29.85 0.18 -1.04 16 15 C -0.03 -0.91 6.50 41.60 0.27 -0.64 16 16 C -0.02 -0.41 11.49 83.49 0.96 0.55 16 17 N -0.29 -6.24 3.20 -351.48 -1.12 -7.37 16 18 C 0.12 1.09 7.05 85.63 0.60 1.70 16 19 C 0.45 7.31 7.97 71.23 0.57 7.87 16 20 O -0.53 -14.68 15.43 21.96 0.34 -14.34 16 21 O -0.35 -4.08 10.57 -51.42 -0.54 -4.62 16 22 C 0.03 0.28 10.56 113.37 1.20 1.48 16 23 N -0.11 -3.50 12.13 37.02 0.45 -3.05 16 24 N -0.31 -11.70 12.40 -48.60 -0.60 -12.30 16 25 H 0.22 8.26 7.80 -4.43 -0.03 8.23 16 26 H 0.07 3.73 6.35 -2.39 -0.02 3.72 16 27 H 0.08 2.86 8.07 -2.39 -0.02 2.84 16 28 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 30 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 31 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.10 2.82 8.12 -2.39 -0.02 2.80 16 33 H 0.25 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.20 -0.53 8.07 -2.38 -0.02 -0.55 16 35 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 37 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 38 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -85.69 341.94 7.78 -77.91 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.06 Total: 4.73 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 7.75 Total: -4.40 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -2.85 Total: -107.01 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.20 Total: -18.96 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -85.69 7.78 -77.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491650666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.662 kcal (2) G-P(sol) polarization free energy of solvation -85.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds