Wall clock time and date at job start Tue Mar 31 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47249 * 2 1 4 4 C 1.46502 * 119.99812 * 274.99954 * 3 2 1 5 5 C 1.50697 * 109.47332 * 84.99656 * 4 3 2 6 6 H 1.08000 * 119.99930 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00195 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00176 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99827 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47140 * 90.00246 * 9 7 5 11 11 H 1.48501 * 109.47257 * 209.99994 * 9 7 5 12 12 H 1.48503 * 109.47479 * 330.00346 * 9 7 5 13 13 S 1.65601 * 120.00250 * 94.99822 * 3 2 1 14 14 O 1.42097 * 106.40116 * 203.53885 * 13 3 2 15 15 O 1.42095 * 106.40015 * 336.45830 * 13 3 2 16 16 N 1.65596 * 107.21657 * 89.99794 * 13 3 2 17 17 C 1.46500 * 119.99734 * 65.00110 * 16 13 3 18 18 H 1.09000 * 110.45986 * 22.39643 * 17 16 13 19 19 C 1.54473 * 110.51274 * 259.63884 * 17 16 13 20 20 O 1.44427 * 104.80515 * 217.38050 * 19 17 16 21 21 C 1.44422 * 105.27748 * 40.50956 * 20 19 17 22 22 H 1.09006 * 110.46711 * 78.36434 * 21 20 19 23 23 C 1.52992 * 110.37458 * 200.65892 * 21 20 19 24 24 C 1.54486 * 104.80415 * 319.49243 * 21 20 19 25 25 H 1.09001 * 109.47002 * 60.00085 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00351 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99358 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99649 * 2 1 3 30 30 H 1.08996 * 109.47248 * 205.00244 * 4 3 2 31 31 H 1.08999 * 109.47047 * 325.00040 * 4 3 2 32 32 H 0.97005 * 120.00311 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00121 * 244.99831 * 16 13 3 34 34 H 1.09000 * 110.37403 * 336.20681 * 19 17 16 35 35 H 1.09000 * 110.37177 * 98.54926 * 19 17 16 36 36 H 1.09006 * 109.47280 * 175.37996 * 23 21 20 37 37 H 1.09002 * 109.47103 * 295.37864 * 23 21 20 38 38 H 1.09001 * 109.47719 * 55.38312 * 23 21 20 39 39 H 1.09004 * 110.50749 * 265.33373 * 24 21 20 40 40 H 1.08999 * 110.51152 * 142.61648 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 0.8362 2.7287 -1.6357 6 1 -0.0225 2.5948 -0.9944 7 6 0.7225 3.4671 -2.7946 8 7 -0.4312 4.0086 -3.1188 9 14 2.2078 3.6994 -3.9034 10 1 2.2564 2.6015 -4.9022 11 1 2.1019 5.0034 -4.6060 12 1 3.4458 3.6779 -3.0836 13 16 2.4123 2.1203 1.4287 14 8 2.3058 3.5186 1.1997 15 8 1.6869 1.4416 2.4447 16 7 4.0144 1.8137 1.7137 17 6 5.0351 2.3523 0.8113 18 1 4.6483 3.2163 0.2710 19 6 5.5149 1.2641 -0.1744 20 8 6.9311 1.5029 -0.3271 21 6 7.4069 1.8290 0.9969 22 1 7.5236 0.9242 1.5936 23 6 8.7337 2.5863 0.9145 24 6 6.3084 2.7326 1.5997 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 2.9081 2.8917 -1.1514 31 1 2.4690 1.4182 -2.0480 32 1 -0.5111 4.5284 -3.9339 33 1 4.2771 1.2775 2.4782 34 1 5.3402 0.2718 0.2414 35 1 5.0067 1.3697 -1.1329 36 1 9.0378 2.8963 1.9143 37 1 9.4974 1.9360 0.4878 38 1 8.6114 3.4661 0.2829 39 1 6.5525 3.7839 1.4471 40 1 6.1785 2.5197 2.6608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580643655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:56 Heat of formation + Delta-G solvation = -122.297292 kcal Electronic energy + Delta-G solvation = -23292.362455 eV Core-core repulsion = 19848.088232 eV Total energy + Delta-G solvation = -3444.274223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.74029 -36.74613 -36.23139 -35.26695 -34.88078 -32.52709 -32.24158 -30.11438 -29.26707 -27.25200 -26.09473 -22.59943 -22.05574 -21.78819 -21.12083 -19.31903 -17.33856 -17.18301 -16.86722 -16.55174 -15.67462 -15.48765 -15.35438 -14.83852 -14.31888 -13.83109 -13.52912 -13.21635 -12.96651 -12.88513 -12.56998 -12.47979 -12.38664 -12.13790 -11.95565 -11.59058 -11.53083 -11.50982 -11.38060 -11.13471 -11.09139 -11.02565 -10.86876 -10.50961 -10.23319 -10.19891 -9.98722 -9.48766 -9.38943 -8.60083 -8.20020 -6.08717 -4.07776 1.06354 3.25018 3.29539 3.32587 3.36894 3.75874 4.04783 4.37235 4.38242 4.53447 4.78001 4.85491 5.00931 5.01670 5.14700 5.18663 5.33161 5.38992 5.45041 5.50653 5.63916 5.79224 5.80131 5.83680 5.89209 5.94829 6.04245 6.13434 6.34354 6.61404 6.62936 6.69769 6.98351 7.00232 7.11594 7.39948 7.56540 8.48130 8.97081 9.50228 11.04448 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.006975 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.427376 B = 4013.542221 C = 5135.930350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.136 3.864 3 N -0.987 5.987 4 C 0.226 3.774 5 C -0.529 4.529 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.264 1.264 13 S 2.778 3.222 14 O -0.960 6.960 15 O -0.990 6.990 16 N -1.126 6.126 17 C 0.118 3.882 18 H 0.111 0.889 19 C 0.029 3.971 20 O -0.368 6.368 21 C 0.068 3.932 22 H 0.069 0.931 23 C -0.147 4.147 24 C -0.156 4.156 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.236 -7.308 8.345 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.829 5.829 4 C 0.103 3.897 5 C -0.568 4.568 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.696 3.304 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.786 3.214 14 O -0.943 6.943 15 O -0.974 6.974 16 N -0.884 5.884 17 C 0.009 3.991 18 H 0.129 0.871 19 C -0.049 4.049 20 O -0.287 6.287 21 C 0.010 3.990 22 H 0.087 0.913 23 C -0.204 4.204 24 C -0.195 4.195 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.645 -6.563 8.391 18.110 hybrid contribution 0.803 -0.250 -0.451 0.954 sum 15.448 -6.813 7.940 18.657 Atomic orbital electron populations 1.22261 0.95911 1.00914 1.04149 1.20990 0.95249 0.81642 1.01128 1.57559 1.78578 1.23232 1.23534 1.19481 0.98413 0.91036 0.80815 1.21392 0.95729 1.31806 1.07843 0.89993 1.24873 0.95638 0.94953 0.97486 1.69888 1.24029 1.34328 1.25000 0.86962 0.83905 0.78132 0.81355 1.20077 1.20928 1.18875 1.02125 0.72478 0.73977 0.72818 1.93639 1.85098 1.30320 1.85246 1.93563 1.69782 1.76217 1.57813 1.56399 1.25695 1.68327 1.37930 1.22151 0.89357 0.96981 0.90593 0.87146 1.24020 0.81762 0.98143 1.01012 1.89171 1.21629 1.90356 1.27538 1.22989 0.94493 0.96841 0.84668 0.91350 1.21811 0.95470 1.00726 1.02427 1.23314 0.93932 1.01607 1.00636 0.89825 0.93085 0.92761 0.91965 0.91051 0.95158 0.95285 0.92548 0.75739 0.91362 0.87949 0.91182 0.91919 0.91525 0.89401 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.83 37.16 0.37 -2.69 16 2 C 0.14 2.20 6.09 -4.04 -0.02 2.18 16 3 N -0.99 -18.75 2.86 -115.66 -0.33 -19.08 16 4 C 0.23 5.00 4.19 -5.19 -0.02 4.98 16 5 C -0.53 -14.43 8.97 -34.44 -0.31 -14.74 16 6 H 0.08 2.45 7.13 -52.49 -0.37 2.08 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -27.01 13.96 55.43 0.77 -26.23 16 9 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 13 S 2.78 51.62 6.03 -107.50 -0.65 50.97 16 14 O -0.96 -21.97 16.49 -57.17 -0.94 -22.91 16 15 O -0.99 -19.65 17.11 -57.17 -0.98 -20.63 16 16 N -1.13 -14.91 5.52 -3.56 -0.02 -14.93 16 17 C 0.12 1.54 3.81 -66.36 -0.25 1.29 16 18 H 0.11 1.67 7.08 -51.93 -0.37 1.31 16 19 C 0.03 0.37 7.35 37.93 0.28 0.65 16 20 O -0.37 -4.82 11.34 -35.23 -0.40 -5.22 16 21 C 0.07 0.68 3.92 -25.96 -0.10 0.58 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 23 C -0.15 -1.22 9.52 37.15 0.35 -0.87 16 24 C -0.16 -1.60 6.39 -25.16 -0.16 -1.76 16 25 H 0.08 1.71 6.59 -51.93 -0.34 1.37 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.86 7.61 -51.93 -0.40 0.46 16 29 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 30 H 0.03 0.68 6.18 -51.93 -0.32 0.36 16 31 H 0.03 0.60 7.43 -51.93 -0.39 0.22 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 33 H 0.41 4.21 8.72 -34.47 -0.30 3.91 16 34 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 35 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 40 H 0.09 0.73 7.83 -51.93 -0.41 0.33 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -33.94 334.88 -8.40 -42.34 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.26 Total: 3.07 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 0.03 Total: -8.41 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.42 Total: -60.25 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -2.32 Total: -48.76 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 51.62 SS G_CDS: -0.65 Total: 50.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.94 -8.40 -42.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580643655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.955 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds