Wall clock time and date at job start Tue Mar 31 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47249 * 2 1 4 4 C 1.46502 * 119.99812 * 274.99954 * 3 2 1 5 5 C 1.50697 * 109.47332 * 84.99656 * 4 3 2 6 6 H 1.08000 * 119.99930 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00195 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00176 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99827 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47140 * 90.00246 * 9 7 5 11 11 H 1.48501 * 109.47257 * 209.99994 * 9 7 5 12 12 H 1.48503 * 109.47479 * 330.00346 * 9 7 5 13 13 S 1.65601 * 120.00250 * 94.99822 * 3 2 1 14 14 O 1.42097 * 106.40116 * 203.53885 * 13 3 2 15 15 O 1.42095 * 106.40015 * 336.45830 * 13 3 2 16 16 N 1.65596 * 107.21657 * 89.99794 * 13 3 2 17 17 C 1.46500 * 119.99734 * 65.00110 * 16 13 3 18 18 H 1.09000 * 110.45986 * 22.39643 * 17 16 13 19 19 C 1.54473 * 110.51274 * 259.63884 * 17 16 13 20 20 O 1.44427 * 104.80515 * 217.38050 * 19 17 16 21 21 C 1.44422 * 105.27748 * 40.50956 * 20 19 17 22 22 H 1.09006 * 110.46711 * 78.36434 * 21 20 19 23 23 C 1.52992 * 110.37458 * 200.65892 * 21 20 19 24 24 C 1.54486 * 104.80415 * 319.49243 * 21 20 19 25 25 H 1.09001 * 109.47002 * 60.00085 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00351 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99358 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99649 * 2 1 3 30 30 H 1.08996 * 109.47248 * 205.00244 * 4 3 2 31 31 H 1.08999 * 109.47047 * 325.00040 * 4 3 2 32 32 H 0.97005 * 120.00311 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00121 * 244.99831 * 16 13 3 34 34 H 1.09000 * 110.37403 * 336.20681 * 19 17 16 35 35 H 1.09000 * 110.37177 * 98.54926 * 19 17 16 36 36 H 1.09006 * 109.47280 * 175.37996 * 23 21 20 37 37 H 1.09002 * 109.47103 * 295.37864 * 23 21 20 38 38 H 1.09001 * 109.47719 * 55.38312 * 23 21 20 39 39 H 1.09004 * 110.50749 * 265.33373 * 24 21 20 40 40 H 1.08999 * 110.51152 * 142.61648 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 0.8362 2.7287 -1.6357 6 1 -0.0225 2.5948 -0.9944 7 6 0.7225 3.4671 -2.7946 8 7 -0.4312 4.0086 -3.1188 9 14 2.2078 3.6994 -3.9034 10 1 2.2564 2.6015 -4.9022 11 1 2.1019 5.0034 -4.6060 12 1 3.4458 3.6779 -3.0836 13 16 2.4123 2.1203 1.4287 14 8 2.3058 3.5186 1.1997 15 8 1.6869 1.4416 2.4447 16 7 4.0144 1.8137 1.7137 17 6 5.0351 2.3523 0.8113 18 1 4.6483 3.2163 0.2710 19 6 5.5149 1.2641 -0.1744 20 8 6.9311 1.5029 -0.3271 21 6 7.4069 1.8290 0.9969 22 1 7.5236 0.9242 1.5936 23 6 8.7337 2.5863 0.9145 24 6 6.3084 2.7326 1.5997 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 2.9081 2.8917 -1.1514 31 1 2.4690 1.4182 -2.0480 32 1 -0.5111 4.5284 -3.9339 33 1 4.2771 1.2775 2.4782 34 1 5.3402 0.2718 0.2414 35 1 5.0067 1.3697 -1.1329 36 1 9.0378 2.8963 1.9143 37 1 9.4974 1.9360 0.4878 38 1 8.6114 3.4661 0.2829 39 1 6.5525 3.7839 1.4471 40 1 6.1785 2.5197 2.6608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580643655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:55 Heat of formation + Delta-G solvation = -149.981573 kcal Electronic energy + Delta-G solvation = -23293.562936 eV Core-core repulsion = 19848.088232 eV Total energy + Delta-G solvation = -3445.474704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63605 -38.33337 -37.78652 -36.88033 -35.96408 -34.58383 -33.00243 -31.72171 -30.25288 -29.08414 -26.89780 -24.32534 -23.38309 -22.98828 -21.96005 -20.68648 -19.08192 -18.74887 -18.30436 -17.87424 -16.93479 -16.57010 -16.31553 -16.26105 -15.72273 -15.39453 -14.76908 -14.60436 -14.51064 -14.30200 -13.87979 -13.69346 -13.52545 -13.22278 -13.16575 -13.09700 -13.04877 -12.84704 -12.74542 -12.68423 -12.61763 -12.24586 -12.03435 -11.93715 -11.73936 -11.67986 -11.46495 -10.86611 -10.72997 -10.47799 -9.81897 -8.24114 -6.27989 -0.40691 1.37597 1.41499 1.49528 1.97077 2.37523 2.56840 2.97304 3.09449 3.38022 3.48971 3.71113 3.91218 3.94498 4.10880 4.21621 4.29609 4.46195 4.49125 4.55935 4.66023 4.69285 4.76121 4.85823 4.86193 4.96287 4.99832 5.06387 5.09136 5.14804 5.32303 5.41217 5.53623 5.56597 5.78214 5.87224 6.13955 6.36360 6.76406 7.33981 8.93007 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.006975 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.427376 B = 4013.542221 C = 5135.930350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 N -0.992 5.992 4 C 0.234 3.766 5 C -0.531 4.531 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.936 3.064 10 H -0.256 1.256 11 H -0.289 1.289 12 H -0.239 1.239 13 S 2.792 3.208 14 O -1.010 7.010 15 O -1.006 7.006 16 N -1.100 6.100 17 C 0.109 3.891 18 H 0.086 0.914 19 C 0.031 3.969 20 O -0.388 6.388 21 C 0.064 3.936 22 H 0.088 0.912 23 C -0.146 4.146 24 C -0.152 4.152 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.031 0.969 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.265 0.735 33 H 0.428 0.572 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.554 -9.125 8.863 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 N -0.832 5.832 4 C 0.109 3.891 5 C -0.571 4.571 6 H 0.054 0.946 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.758 3.242 10 H -0.180 1.180 11 H -0.215 1.215 12 H -0.162 1.162 13 S 2.800 3.200 14 O -0.993 6.993 15 O -0.989 6.989 16 N -0.864 5.864 17 C 0.000 4.000 18 H 0.104 0.896 19 C -0.048 4.048 20 O -0.307 6.307 21 C 0.007 3.993 22 H 0.106 0.894 23 C -0.204 4.204 24 C -0.191 4.191 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.265 0.735 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.972 -8.421 8.948 21.771 hybrid contribution -0.275 0.278 -0.494 0.631 sum 17.697 -8.142 8.454 21.235 Atomic orbital electron populations 1.22232 0.97578 1.02224 1.01101 1.21312 0.93917 0.80538 1.03997 1.57468 1.79287 1.24154 1.22320 1.19260 0.95327 0.91729 0.82802 1.21731 0.96798 1.31602 1.06921 0.94558 1.25862 0.98918 0.94741 0.99499 1.70069 1.26894 1.36102 1.26001 0.85897 0.80518 0.78234 0.79527 1.18027 1.21508 1.16185 1.01422 0.73377 0.72801 0.72350 1.93578 1.86310 1.33565 1.85845 1.93532 1.71097 1.76106 1.58207 1.55766 1.23583 1.68422 1.38614 1.22257 0.89958 0.96603 0.91140 0.89627 1.23990 0.81783 0.98707 1.00334 1.89159 1.21569 1.90565 1.29441 1.23224 0.94771 0.97704 0.83595 0.89434 1.21843 0.94723 1.00180 1.03608 1.23347 0.92313 1.01913 1.01506 0.93611 0.89606 0.95002 0.88713 0.88429 0.94887 0.92651 0.92619 0.73486 0.89406 0.89009 0.89031 0.91639 0.92508 0.89236 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.05 9.83 71.98 0.71 -5.34 16 2 C 0.13 3.85 6.09 86.38 0.53 4.38 16 3 N -0.99 -36.66 2.86 -519.84 -1.48 -38.14 16 4 C 0.23 10.14 4.19 85.63 0.36 10.50 16 5 C -0.53 -29.84 8.97 25.60 0.23 -29.61 16 6 H 0.04 2.31 7.13 -2.91 -0.02 2.29 16 7 C 0.01 0.41 5.47 84.66 0.46 0.88 16 8 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 9 Si 0.94 42.34 27.47 68.60 1.88 44.23 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.24 -9.73 6.54 99.48 0.65 -9.07 16 13 S 2.79 101.78 6.03 -56.49 -0.34 101.44 16 14 O -1.01 -46.98 16.49 -128.00 -2.11 -49.09 16 15 O -1.01 -39.04 17.11 -128.00 -2.19 -41.23 16 16 N -1.10 -26.49 5.52 -165.17 -0.91 -27.40 16 17 C 0.11 2.60 3.81 46.01 0.18 2.77 16 18 H 0.09 2.51 7.08 -2.39 -0.02 2.50 16 19 C 0.03 0.68 7.35 72.48 0.53 1.22 16 20 O -0.39 -9.06 11.34 -148.98 -1.69 -10.75 16 21 C 0.06 1.07 3.92 31.10 0.12 1.19 16 22 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 23 C -0.15 -1.98 9.52 71.98 0.68 -1.29 16 24 C -0.15 -2.65 6.39 31.62 0.20 -2.44 16 25 H 0.04 1.93 6.59 -2.39 -0.02 1.92 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 2.28 7.61 -2.39 -0.02 2.27 16 29 H 0.10 2.48 8.00 -2.39 -0.02 2.46 16 30 H 0.03 1.44 6.18 -2.39 -0.01 1.43 16 31 H 0.06 2.14 7.43 -2.39 -0.02 2.13 16 32 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 33 H 0.43 7.32 8.72 -96.75 -0.84 6.48 16 34 H 0.09 1.61 8.06 -2.39 -0.02 1.59 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.55 7.87 -2.38 -0.02 1.53 16 40 H 0.11 1.40 7.83 -2.39 -0.02 1.39 16 Total: -1.00 -77.29 334.88 -2.41 -79.70 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.13 Total: 18.47 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.00 Total: -17.76 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -2.10 Total: -125.01 kcal Atomic # 8 Polarization: -95.08 SS G_CDS: -5.99 Total: -101.07 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.23 kcal Atomic # 16 Polarization: 101.78 SS G_CDS: -0.34 Total: 101.44 kcal Total: -77.29 -2.41 -79.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580643655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.284 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds