Wall clock time and date at job start Tue Mar 31 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99858 * 2 1 4 4 C 1.50706 * 109.47038 * 274.99757 * 3 2 1 5 5 H 1.08008 * 119.99998 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00191 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99729 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99967 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47065 * 59.99721 * 8 6 4 10 10 H 1.48498 * 109.47133 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47294 * 299.99773 * 8 6 4 12 12 S 1.65598 * 119.99942 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.39911 * 156.45880 * 12 2 1 14 14 O 1.42106 * 106.40251 * 23.54432 * 12 2 1 15 15 N 1.65596 * 107.21938 * 270.00177 * 12 2 1 16 16 C 1.46503 * 120.00097 * 65.00215 * 15 12 2 17 17 H 1.08998 * 110.01563 * 23.60815 * 16 15 12 18 18 C 1.53876 * 110.07185 * 262.18891 * 16 15 12 19 19 C 1.54261 * 106.60087 * 240.69367 * 18 16 15 20 20 C 1.55031 * 104.27828 * 23.51628 * 19 18 16 21 21 C 1.54267 * 110.03183 * 145.00229 * 16 15 12 22 22 H 1.08998 * 110.48158 * 214.53572 * 21 16 15 23 23 C 1.53000 * 110.48479 * 337.04071 * 21 16 15 24 24 O 1.42903 * 109.46726 * 183.16124 * 23 21 16 25 25 H 1.08998 * 109.47359 * 269.99895 * 1 2 3 26 26 H 1.08996 * 109.46956 * 30.00534 * 1 2 3 27 27 H 1.09006 * 109.46705 * 150.00106 * 1 2 3 28 28 H 1.08998 * 109.47397 * 34.99689 * 3 2 1 29 29 H 1.08994 * 109.47063 * 155.00098 * 3 2 1 30 30 H 0.97005 * 119.99807 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00045 * 245.00240 * 15 12 2 32 32 H 1.09007 * 110.03072 * 359.97438 * 18 16 15 33 33 H 1.09000 * 110.02907 * 121.35527 * 18 16 15 34 34 H 1.09004 * 110.48538 * 142.28955 * 19 18 16 35 35 H 1.08997 * 110.48662 * 264.80006 * 19 18 16 36 36 H 1.09000 * 110.87363 * 203.90034 * 20 19 18 37 37 H 1.09006 * 110.69362 * 80.48948 * 20 19 18 38 38 H 1.09002 * 109.47398 * 303.16369 * 23 21 16 39 39 H 1.09001 * 109.47194 * 63.16549 * 23 21 16 40 40 H 0.96700 * 113.99509 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4155 5 1 1.9282 1.1937 -2.2332 6 6 3.0006 2.9503 -1.6666 7 7 3.5033 3.6469 -0.6708 8 14 3.1784 3.5665 -3.4210 9 1 1.8318 3.7730 -4.0120 10 1 3.9210 4.8525 -3.4211 11 1 3.9233 2.5643 -4.2247 12 16 2.2930 -1.4341 0.0006 13 8 3.5759 -1.1570 -0.5440 14 8 1.4114 -2.4068 -0.5435 15 7 2.5381 -1.8580 1.5826 16 6 1.3946 -2.1768 2.4411 17 1 0.5476 -2.4928 1.8322 18 6 1.0087 -0.9489 3.2844 19 6 1.1687 -1.3613 4.7622 20 6 2.1813 -2.5346 4.7243 21 6 1.7757 -3.2925 3.4360 22 1 0.9207 -3.9408 3.6279 23 6 2.9545 -4.1077 2.9006 24 8 3.2417 -5.1785 3.8023 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5139 28 1 1.6501 2.0043 0.5894 29 1 3.1857 1.1177 0.4343 30 1 3.9675 4.4802 -0.8474 31 1 3.4387 -1.8952 1.9408 32 1 1.6726 -0.1152 3.0554 33 1 -0.0253 -0.6684 3.0840 34 1 1.5656 -0.5326 5.3486 35 1 0.2146 -1.6940 5.1708 36 1 2.0684 -3.1735 5.6002 37 1 3.2021 -2.1601 4.6470 38 1 2.7001 -4.5149 1.9221 39 1 3.8298 -3.4644 2.8100 40 1 3.9801 -5.7382 3.5256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583510899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:59 Heat of formation + Delta-G solvation = -134.502182 kcal Electronic energy + Delta-G solvation = -23078.177074 eV Core-core repulsion = 19633.373607 eV Total energy + Delta-G solvation = -3444.803467 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.26824 -36.63139 -36.35464 -35.48103 -35.17595 -33.14891 -32.43794 -30.12040 -27.80524 -27.28879 -25.05343 -24.45077 -22.28645 -20.68651 -19.95055 -19.14537 -17.73855 -17.20257 -16.60415 -16.32214 -16.01101 -15.32839 -15.15941 -14.76093 -14.55449 -14.24085 -13.50916 -13.47702 -13.28478 -12.78875 -12.37323 -12.17534 -12.10879 -11.95429 -11.62869 -11.47203 -11.20817 -11.11912 -11.07125 -11.03971 -10.88467 -10.80097 -10.71291 -10.62564 -10.49452 -10.04279 -10.01061 -9.77098 -9.33300 -8.44567 -8.06248 -6.06839 -4.10786 1.22878 3.33410 3.36913 3.41234 3.48474 3.93495 4.18049 4.44358 4.46023 4.52625 4.84432 5.02286 5.14005 5.25585 5.28410 5.30174 5.37403 5.46048 5.56904 5.60071 5.62078 5.71194 5.79093 5.91652 5.97076 6.02439 6.16587 6.27654 6.31462 6.44152 6.56343 7.08456 7.25418 7.42000 7.46641 7.61295 7.90652 8.20280 8.91331 9.54451 11.01666 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.004789 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.754199 B = 5845.091681 C = 6153.508296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.994 5.994 3 C 0.259 3.741 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.780 3.220 13 O -0.965 6.965 14 O -0.999 6.999 15 N -1.130 6.130 16 C 0.156 3.844 17 H 0.094 0.906 18 C -0.145 4.145 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.094 4.094 22 H 0.090 0.910 23 C 0.083 3.917 24 O -0.576 6.576 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.411 0.589 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 -12.064 11.170 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.837 5.837 3 C 0.137 3.863 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.787 3.213 13 O -0.949 6.949 14 O -0.982 6.982 15 N -0.888 5.888 16 C 0.048 3.952 17 H 0.112 0.888 18 C -0.184 4.184 19 C -0.161 4.161 20 C -0.151 4.151 21 C -0.114 4.114 22 H 0.109 0.891 23 C 0.006 3.994 24 O -0.381 6.381 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.245 0.755 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.555 -12.095 10.676 16.764 hybrid contribution 0.893 0.534 -0.822 1.326 sum -3.662 -11.561 9.854 15.626 Atomic orbital electron populations 1.21386 0.80272 1.03447 1.00217 1.57545 1.14199 1.23205 1.88716 1.19018 0.90944 0.78732 0.97571 1.21466 1.36134 1.06334 0.92976 0.92270 1.24922 0.95104 0.96493 0.97445 1.69908 1.37287 1.15362 1.30973 0.86580 0.78296 0.77990 0.84722 1.20186 1.21177 1.20017 1.01982 0.73388 0.72994 0.72894 1.93644 1.40699 1.84858 1.75692 1.93524 1.67619 1.60213 1.76878 1.56462 1.14402 1.85842 1.32113 1.21323 0.88208 0.93872 0.91788 0.88817 1.22780 1.02577 0.98282 0.94755 1.22363 0.99249 0.98120 0.96369 1.22522 0.99227 0.96304 0.97001 1.22174 0.98230 0.95550 0.95467 0.89141 1.22165 0.97122 0.88168 0.91991 1.86438 1.56297 1.44354 1.50989 0.94225 0.90426 0.91684 0.94730 0.94528 0.92655 0.75496 0.89844 0.90870 0.91458 0.91653 0.91228 0.91420 0.93160 0.93339 0.77543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.54 10.68 59.85 0.64 2.18 16 2 N -0.99 -19.88 3.23 -123.05 -0.40 -20.28 16 3 C 0.26 6.35 5.08 -5.19 -0.03 6.33 16 4 C -0.53 -14.76 9.38 -34.44 -0.32 -15.08 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 S 2.78 53.26 6.08 -107.50 -0.65 52.61 16 13 O -0.97 -22.64 17.11 -57.17 -0.98 -23.62 16 14 O -1.00 -20.17 16.10 -57.17 -0.92 -21.09 16 15 N -1.13 -15.95 4.62 -3.94 -0.02 -15.97 16 16 C 0.16 1.88 3.47 -66.81 -0.23 1.65 16 17 H 0.09 1.14 7.54 -51.93 -0.39 0.75 16 18 C -0.14 -1.63 6.36 -25.62 -0.16 -1.79 16 19 C -0.12 -1.18 6.83 -25.00 -0.17 -1.35 16 20 C -0.11 -1.12 6.23 -24.67 -0.15 -1.28 16 21 C -0.09 -1.01 3.09 -88.97 -0.27 -1.28 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 23 C 0.08 0.89 5.60 37.16 0.21 1.10 16 24 O -0.58 -5.86 13.54 -35.23 -0.48 -6.33 16 25 H 0.04 0.53 7.16 -51.93 -0.37 0.16 16 26 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 27 H 0.06 1.03 7.02 -51.93 -0.36 0.66 16 28 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.41 5.20 7.14 -34.47 -0.25 4.95 16 32 H 0.08 1.08 7.92 -51.92 -0.41 0.67 16 33 H 0.07 0.76 7.41 -51.93 -0.38 0.37 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.69 8.00 -51.93 -0.42 0.27 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.49 6.50 -51.93 -0.34 0.15 16 40 H 0.38 2.27 9.12 45.56 0.42 2.68 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -34.16 335.41 -8.67 -42.83 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.40 Total: 3.12 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.59 Total: -7.86 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.32 Total: -61.49 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -2.38 Total: -51.03 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 53.26 SS G_CDS: -0.65 Total: 52.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.16 -8.67 -42.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583510899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.670 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds