Wall clock time and date at job start Tue Mar 31 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99858 * 2 1 4 4 C 1.50706 * 109.47038 * 274.99757 * 3 2 1 5 5 H 1.08008 * 119.99998 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00191 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99729 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99967 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47065 * 59.99721 * 8 6 4 10 10 H 1.48498 * 109.47133 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47294 * 299.99773 * 8 6 4 12 12 S 1.65598 * 119.99942 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.39911 * 156.45880 * 12 2 1 14 14 O 1.42106 * 106.40251 * 23.54432 * 12 2 1 15 15 N 1.65596 * 107.21938 * 270.00177 * 12 2 1 16 16 C 1.46503 * 120.00097 * 65.00215 * 15 12 2 17 17 H 1.08998 * 110.01563 * 23.60815 * 16 15 12 18 18 C 1.53876 * 110.07185 * 262.18891 * 16 15 12 19 19 C 1.54261 * 106.60087 * 240.69367 * 18 16 15 20 20 C 1.55031 * 104.27828 * 23.51628 * 19 18 16 21 21 C 1.54267 * 110.03183 * 145.00229 * 16 15 12 22 22 H 1.08998 * 110.48158 * 214.53572 * 21 16 15 23 23 C 1.53000 * 110.48479 * 337.04071 * 21 16 15 24 24 O 1.42903 * 109.46726 * 183.16124 * 23 21 16 25 25 H 1.08998 * 109.47359 * 269.99895 * 1 2 3 26 26 H 1.08996 * 109.46956 * 30.00534 * 1 2 3 27 27 H 1.09006 * 109.46705 * 150.00106 * 1 2 3 28 28 H 1.08998 * 109.47397 * 34.99689 * 3 2 1 29 29 H 1.08994 * 109.47063 * 155.00098 * 3 2 1 30 30 H 0.97005 * 119.99807 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00045 * 245.00240 * 15 12 2 32 32 H 1.09007 * 110.03072 * 359.97438 * 18 16 15 33 33 H 1.09000 * 110.02907 * 121.35527 * 18 16 15 34 34 H 1.09004 * 110.48538 * 142.28955 * 19 18 16 35 35 H 1.08997 * 110.48662 * 264.80006 * 19 18 16 36 36 H 1.09000 * 110.87363 * 203.90034 * 20 19 18 37 37 H 1.09006 * 110.69362 * 80.48948 * 20 19 18 38 38 H 1.09002 * 109.47398 * 303.16369 * 23 21 16 39 39 H 1.09001 * 109.47194 * 63.16549 * 23 21 16 40 40 H 0.96700 * 113.99509 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4155 5 1 1.9282 1.1937 -2.2332 6 6 3.0006 2.9503 -1.6666 7 7 3.5033 3.6469 -0.6708 8 14 3.1784 3.5665 -3.4210 9 1 1.8318 3.7730 -4.0120 10 1 3.9210 4.8525 -3.4211 11 1 3.9233 2.5643 -4.2247 12 16 2.2930 -1.4341 0.0006 13 8 3.5759 -1.1570 -0.5440 14 8 1.4114 -2.4068 -0.5435 15 7 2.5381 -1.8580 1.5826 16 6 1.3946 -2.1768 2.4411 17 1 0.5476 -2.4928 1.8322 18 6 1.0087 -0.9489 3.2844 19 6 1.1687 -1.3613 4.7622 20 6 2.1813 -2.5346 4.7243 21 6 1.7757 -3.2925 3.4360 22 1 0.9207 -3.9408 3.6279 23 6 2.9545 -4.1077 2.9006 24 8 3.2417 -5.1785 3.8023 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5139 28 1 1.6501 2.0043 0.5894 29 1 3.1857 1.1177 0.4343 30 1 3.9675 4.4802 -0.8474 31 1 3.4387 -1.8952 1.9408 32 1 1.6726 -0.1152 3.0554 33 1 -0.0253 -0.6684 3.0840 34 1 1.5656 -0.5326 5.3486 35 1 0.2146 -1.6940 5.1708 36 1 2.0684 -3.1735 5.6002 37 1 3.2021 -2.1601 4.6470 38 1 2.7001 -4.5149 1.9221 39 1 3.8298 -3.4644 2.8100 40 1 3.9801 -5.7382 3.5256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583510899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:59 Heat of formation + Delta-G solvation = -162.208828 kcal Electronic energy + Delta-G solvation = -23079.378524 eV Core-core repulsion = 19633.373607 eV Total energy + Delta-G solvation = -3446.004917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17678 -38.25489 -37.27450 -37.09854 -36.84545 -34.49461 -34.22749 -30.96715 -29.64716 -28.27183 -26.74114 -25.30177 -24.18401 -21.51438 -21.01704 -20.39857 -19.13440 -18.54332 -18.35514 -17.88765 -17.25938 -16.72262 -16.29888 -16.13881 -15.58740 -15.40493 -15.09855 -14.92340 -14.29188 -14.05544 -13.93370 -13.78468 -13.33235 -13.22999 -13.16905 -13.03956 -12.99588 -12.92136 -12.46834 -12.36248 -12.04345 -12.00214 -11.91955 -11.83468 -11.73315 -11.61600 -11.41638 -10.81856 -10.59671 -10.46904 -9.75176 -8.19698 -6.31280 -0.30139 1.39470 1.42624 1.49741 2.04068 2.40755 2.64271 3.11403 3.19087 3.45197 3.65036 3.68048 4.02746 4.14350 4.27804 4.32339 4.43309 4.54251 4.60907 4.65887 4.70384 4.76232 4.81131 4.84976 4.95605 5.09384 5.14787 5.22052 5.26179 5.33833 5.41520 5.50116 5.55138 5.71139 5.87491 6.09816 6.15583 6.76915 6.87380 7.37519 8.87409 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.004789 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.754199 B = 5845.091681 C = 6153.508296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.999 5.999 3 C 0.276 3.724 4 C -0.551 4.551 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.278 1.278 12 S 2.797 3.203 13 O -1.013 7.013 14 O -1.009 7.009 15 N -1.113 6.113 16 C 0.150 3.850 17 H 0.096 0.904 18 C -0.146 4.146 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.091 4.091 22 H 0.099 0.901 23 C 0.081 3.919 24 O -0.585 6.585 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.015 0.985 30 H 0.267 0.733 31 H 0.419 0.581 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -12.631 11.899 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.841 5.841 3 C 0.152 3.848 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.202 1.202 11 H -0.204 1.204 12 S 2.805 3.195 13 O -0.997 6.997 14 O -0.992 6.992 15 N -0.876 5.876 16 C 0.043 3.957 17 H 0.114 0.886 18 C -0.185 4.185 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.112 4.112 22 H 0.117 0.883 23 C 0.003 3.997 24 O -0.393 6.393 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.497 -12.680 11.405 17.919 hybrid contribution 1.161 0.613 -0.976 1.636 sum -4.336 -12.067 10.429 16.528 Atomic orbital electron populations 1.21612 0.78197 1.03474 1.02570 1.57408 1.15598 1.21789 1.89322 1.18554 0.90347 0.80254 0.95640 1.21835 1.36192 1.06622 0.94336 0.93116 1.25708 0.94836 0.96777 1.01277 1.69996 1.37831 1.15751 1.32743 0.85677 0.78783 0.77551 0.80122 1.18867 1.20151 1.20404 1.01232 0.72082 0.72553 0.73633 1.93575 1.43015 1.85460 1.77639 1.93505 1.67677 1.60177 1.77853 1.56008 1.15753 1.85159 1.30703 1.21594 0.87291 0.95020 0.91828 0.88597 1.22778 1.02780 0.97114 0.95828 1.22346 0.99979 0.98032 0.95141 1.22501 0.99077 0.96386 0.96770 1.22172 0.98623 0.95166 0.95206 0.88274 1.22135 0.97313 0.88490 0.91761 1.86392 1.57422 1.44480 1.51005 0.90707 0.91242 0.90805 0.95247 0.96658 0.92407 0.74448 0.91724 0.89654 0.91201 0.90038 0.90548 0.91910 0.93948 0.93060 0.75534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.77 10.68 127.77 1.36 4.13 16 2 N -1.00 -39.86 3.23 -543.22 -1.75 -41.61 16 3 C 0.28 13.72 5.08 85.64 0.43 14.15 16 4 C -0.55 -31.03 9.38 25.60 0.24 -30.79 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.77 5.46 84.65 0.46 1.23 16 7 N -0.92 -53.90 13.29 21.45 0.28 -53.61 16 8 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 9 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 S 2.80 107.07 6.08 -56.49 -0.34 106.73 16 13 O -1.01 -48.51 17.11 -128.00 -2.19 -50.70 16 14 O -1.01 -40.02 16.10 -128.00 -2.06 -42.08 16 15 N -1.11 -30.71 4.62 -166.37 -0.77 -31.48 16 16 C 0.15 3.35 3.47 45.72 0.16 3.51 16 17 H 0.10 2.13 7.54 -2.39 -0.02 2.12 16 18 C -0.15 -3.00 6.36 31.32 0.20 -2.80 16 19 C -0.12 -1.96 6.83 31.72 0.22 -1.75 16 20 C -0.11 -1.94 6.23 31.93 0.20 -1.74 16 21 C -0.09 -1.77 3.09 -9.72 -0.03 -1.80 16 22 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 23 C 0.08 1.61 5.60 71.98 0.40 2.02 16 24 O -0.59 -10.80 13.54 -148.98 -2.02 -12.82 16 25 H 0.07 1.84 7.16 -2.39 -0.02 1.82 16 26 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 27 H 0.07 2.22 7.02 -2.38 -0.02 2.20 16 28 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 29 H 0.02 0.83 7.61 -2.39 -0.02 0.81 16 30 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 31 H 0.42 10.42 7.14 -96.75 -0.69 9.73 16 32 H 0.06 1.60 7.92 -2.38 -0.02 1.58 16 33 H 0.08 1.54 7.41 -2.39 -0.02 1.52 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.17 8.00 -2.38 -0.02 1.15 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.97 6.50 -2.39 -0.02 0.95 16 40 H 0.40 4.04 9.12 -74.06 -0.68 3.37 16 Total: -1.00 -72.47 335.41 -3.49 -75.95 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.32 Total: 16.88 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 3.65 Total: -13.84 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -2.24 Total: -126.70 kcal Atomic # 8 Polarization: -99.33 SS G_CDS: -6.27 Total: -105.60 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 107.07 SS G_CDS: -0.34 Total: 106.73 kcal Total: -72.47 -3.49 -75.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583510899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.255 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds