Wall clock time and date at job start Tue Mar 31 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99836 * 2 1 4 4 C 1.53044 * 109.45769 * 150.00178 * 3 2 1 5 5 C 1.53192 * 109.30830 * 181.37194 * 4 3 2 6 6 N 1.46921 * 108.77749 * 305.36325 * 5 4 3 7 7 S 1.65606 * 120.63289 * 233.58977 * 6 5 4 8 8 O 1.42105 * 106.40008 * 336.45758 * 7 6 5 9 9 O 1.42098 * 106.40370 * 203.53944 * 7 6 5 10 10 N 1.65595 * 107.22013 * 89.99671 * 7 6 5 11 11 C 1.46508 * 119.99876 * 65.00349 * 10 7 6 12 12 C 1.52991 * 109.47282 * 164.99994 * 11 10 7 13 13 C 1.50702 * 109.47353 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99589 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00147 * 180.02562 * 13 12 11 16 16 N 1.31525 * 120.00120 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46897 * 89.99786 * 17 15 13 19 19 H 1.48498 * 109.47771 * 210.00002 * 17 15 13 20 20 H 1.48501 * 109.47238 * 330.00503 * 17 15 13 21 21 C 1.46923 * 118.74101 * 53.86380 * 6 5 4 22 22 C 1.53043 * 109.44993 * 270.06014 * 3 2 1 23 23 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47165 * 299.99890 * 1 2 3 25 25 H 1.08998 * 109.47203 * 59.99872 * 1 2 3 26 26 H 1.08997 * 109.46241 * 30.02807 * 3 2 1 27 27 H 1.08993 * 109.49377 * 61.42131 * 4 3 2 28 28 H 1.08997 * 109.49591 * 301.31921 * 4 3 2 29 29 H 1.09003 * 109.58717 * 185.57630 * 5 4 3 30 30 H 1.09004 * 109.70720 * 65.22402 * 5 4 3 31 31 H 0.96997 * 120.00034 * 245.00377 * 10 7 6 32 32 H 1.09006 * 109.46715 * 285.00199 * 11 10 7 33 33 H 1.08993 * 109.46869 * 44.99478 * 11 10 7 34 34 H 1.09003 * 109.47593 * 300.00518 * 12 11 10 35 35 H 1.09006 * 109.47454 * 59.99767 * 12 11 10 36 36 H 0.96996 * 120.00100 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.58696 * 65.92455 * 21 6 5 38 38 H 1.09000 * 109.58966 * 186.35637 * 21 6 5 39 39 H 1.08994 * 109.49766 * 298.57908 * 22 3 2 40 40 H 1.09009 * 109.49525 * 58.67042 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3592 1.2630 0.7215 5 6 3.9633 2.6705 0.7495 6 7 4.0303 3.1839 -0.6254 7 16 5.4571 3.7511 -1.2458 8 8 6.2542 4.1339 -0.1334 9 8 5.1115 4.6419 -2.2975 10 7 6.2282 2.4681 -1.9541 11 6 5.6372 1.8133 -3.1239 12 6 6.6893 0.9331 -3.8014 13 6 6.0812 0.2590 -5.0043 14 1 5.0478 0.4407 -5.2602 15 6 6.8441 -0.5896 -5.7781 16 7 8.1028 -0.8104 -5.4668 17 14 6.0903 -1.4256 -7.2687 18 1 6.2784 -0.5671 -8.4657 19 1 6.7538 -2.7356 -7.4900 20 1 4.6393 -1.6388 -7.0357 21 6 2.8060 3.1901 -1.4377 22 6 2.2161 1.7717 -1.4431 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.3451 1.9991 0.5143 27 1 4.0330 0.5883 0.1934 28 1 3.2149 0.9086 1.7421 29 1 4.9667 2.6292 1.1734 30 1 3.3378 3.3269 1.3546 31 1 7.0711 2.1502 -1.5945 32 1 4.7957 1.1963 -2.8084 33 1 5.2893 2.5702 -3.8268 34 1 7.5308 1.5499 -4.1167 35 1 7.0372 0.1761 -3.0984 36 1 8.6394 -1.4077 -6.0110 37 1 2.0859 3.8866 -1.0079 38 1 3.0454 3.4917 -2.4574 39 1 2.9006 1.0922 -1.9507 40 1 1.2581 1.7793 -1.9631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594772140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:07 Heat of formation + Delta-G solvation = -136.314480 kcal Electronic energy + Delta-G solvation = -22684.430114 eV Core-core repulsion = 19239.548059 eV Total energy + Delta-G solvation = -3444.882054 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.29750 -37.08126 -36.85408 -35.62398 -35.34619 -32.72605 -31.60653 -31.23913 -29.11197 -26.90796 -24.48622 -23.90645 -23.50479 -21.22206 -20.71273 -19.07235 -18.04378 -17.22468 -16.62936 -16.32362 -15.95048 -15.31190 -15.25377 -14.98316 -14.51884 -14.46585 -13.95822 -13.77168 -13.47796 -13.24139 -12.91310 -12.54667 -12.52192 -11.90602 -11.82548 -11.80402 -11.75288 -11.41832 -11.36538 -11.26583 -11.13278 -10.99842 -10.67303 -10.60106 -10.44654 -9.66700 -9.60266 -9.31142 -9.15312 -8.89804 -8.40775 -6.07950 -4.11387 0.81797 3.04762 3.29250 3.35663 3.38438 3.54070 3.80629 4.40138 4.45061 4.52574 4.70930 4.84803 4.98182 5.06283 5.14465 5.16981 5.19337 5.28929 5.30831 5.45705 5.51316 5.56959 5.60760 5.75993 5.79112 6.01804 6.04406 6.10365 6.29757 6.43196 6.56325 6.75238 7.06545 7.44282 7.56287 7.65391 7.90581 8.28210 8.94335 9.53270 11.03494 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.005380 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.565964 B = 5203.007818 C = 6704.223472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.094 3.906 4 C -0.133 4.133 5 C 0.128 3.872 6 N -1.009 6.009 7 S 2.786 3.214 8 O -0.989 6.989 9 O -0.979 6.979 10 N -1.121 6.121 11 C 0.122 3.878 12 C 0.018 3.982 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.125 3.875 22 C -0.161 4.161 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.414 0.586 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 5.041 13.272 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.036 3.964 4 C -0.172 4.172 5 C 0.003 3.997 6 N -0.848 5.848 7 S 2.794 3.206 8 O -0.974 6.974 9 O -0.963 6.963 10 N -0.884 5.884 11 C -0.003 4.003 12 C -0.021 4.021 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.001 4.001 22 C -0.200 4.200 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.248 0.752 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.280 5.770 13.180 19.580 hybrid contribution -0.367 -0.942 -0.774 1.273 sum -13.648 4.828 12.407 19.066 Atomic orbital electron populations 1.22766 0.81375 1.02645 0.99726 1.87959 1.19373 1.27843 1.95026 1.22041 0.94578 0.84345 0.95409 1.22010 0.96159 0.97657 1.01418 1.21334 1.02687 0.93731 0.81997 1.58230 1.24911 1.79975 1.21706 1.01821 0.72294 0.73681 0.72838 1.93577 1.68390 1.82035 1.53348 1.93595 1.83793 1.62118 1.56757 1.55868 1.35443 1.53997 1.43082 1.21598 0.97966 0.96189 0.84582 1.19276 0.93538 0.93991 0.95269 1.21072 0.97636 1.26868 1.10630 0.92331 1.24997 0.94835 0.96569 0.97854 1.69961 1.06977 1.36911 1.39298 0.86541 0.79339 0.78855 0.82956 1.20574 1.21204 1.19785 1.21458 0.86134 0.96444 0.96040 1.22566 1.02395 0.97424 0.97627 0.89761 0.94314 0.94049 0.92265 0.89942 0.90242 0.88684 0.91143 0.75212 0.93003 0.91756 0.95722 0.95842 0.92841 0.91202 0.88581 0.89516 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.51 10.35 -35.23 -0.36 -4.87 16 3 C 0.09 0.97 2.57 -26.69 -0.07 0.90 16 4 C -0.13 -1.37 5.73 -26.61 -0.15 -1.52 16 5 C 0.13 1.32 6.37 -3.71 -0.02 1.30 16 6 N -1.01 -12.53 3.34 -113.27 -0.38 -12.91 16 7 S 2.79 43.84 6.15 -107.50 -0.66 43.18 16 8 O -0.99 -17.13 16.85 -57.17 -0.96 -18.09 16 9 O -0.98 -18.24 16.31 -57.17 -0.93 -19.17 16 10 N -1.12 -18.74 6.05 -10.61 -0.06 -18.80 16 11 C 0.12 2.37 6.19 -4.04 -0.03 2.34 16 12 C 0.02 0.44 5.11 -27.89 -0.14 0.30 16 13 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.12 1.40 6.41 -3.49 -0.02 1.37 16 22 C -0.16 -1.77 5.71 -26.38 -0.15 -1.92 16 23 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 25 H 0.04 0.32 7.84 -51.93 -0.41 -0.09 16 26 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.98 7.13 -51.93 -0.37 0.61 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.41 6.53 8.65 -34.47 -0.30 6.24 16 32 H 0.05 0.94 6.95 -51.93 -0.36 0.58 16 33 H 0.06 1.28 7.75 -51.93 -0.40 0.88 16 34 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 1.17 7.12 -51.93 -0.37 0.80 16 39 H 0.09 1.14 6.95 -51.93 -0.36 0.78 16 40 H 0.07 0.72 7.84 -51.92 -0.41 0.31 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -33.33 335.81 -8.79 -42.13 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.30 Total: 1.56 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 0.10 Total: -8.82 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.29 Total: -57.11 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -2.26 Total: -42.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 43.84 SS G_CDS: -0.66 Total: 43.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.33 -8.79 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594772140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.189 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds