Wall clock time and date at job start Tue Mar 31 2020 02:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99614 * 2 1 4 4 H 1.08997 * 112.85444 * 341.20209 * 3 2 1 5 5 C 1.54056 * 113.61435 * 112.50751 * 3 2 1 6 6 C 1.53788 * 86.98380 * 139.97750 * 5 3 2 7 7 H 1.09002 * 113.61467 * 219.97642 * 6 5 3 8 8 N 1.46500 * 113.61263 * 89.15974 * 6 5 3 9 9 S 1.65596 * 120.00079 * 115.86301 * 8 6 5 10 10 O 1.42098 * 106.40345 * 311.46071 * 9 8 6 11 11 O 1.42094 * 106.40745 * 178.53902 * 9 8 6 12 12 N 1.65606 * 107.21969 * 64.99962 * 9 8 6 13 13 C 1.46499 * 120.00003 * 89.99706 * 12 9 8 14 14 C 1.46502 * 119.99935 * 270.00204 * 12 9 8 15 15 H 1.09000 * 109.47396 * 0.02562 * 14 12 9 16 16 C 1.53008 * 109.47134 * 119.99548 * 14 12 9 17 17 C 1.50699 * 109.47062 * 239.99423 * 14 12 9 18 18 H 1.07992 * 119.99978 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99781 * 179.97438 * 17 14 12 20 20 N 1.31514 * 119.99924 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00053 * 180.02562 * 19 17 14 22 22 H 1.48509 * 109.47062 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47084 * 119.99939 * 21 19 17 24 24 H 1.48498 * 109.47582 * 240.00361 * 21 19 17 25 25 C 1.53775 * 87.17318 * 334.57043 * 6 5 3 26 26 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47284 * 299.99413 * 1 2 3 28 28 H 1.08999 * 109.47716 * 59.99902 * 1 2 3 29 29 H 1.09001 * 113.61398 * 25.47869 * 5 3 2 30 30 H 1.08996 * 113.69515 * 254.49215 * 5 3 2 31 31 H 0.97004 * 120.00128 * 295.86480 * 8 6 5 32 32 H 1.09002 * 109.47391 * 270.00374 * 13 12 9 33 33 H 1.09001 * 109.46813 * 150.00430 * 13 12 9 34 34 H 1.09004 * 109.47041 * 30.00557 * 13 12 9 35 35 H 1.09002 * 109.47164 * 300.00444 * 16 14 12 36 36 H 1.09003 * 109.46815 * 59.99801 * 16 14 12 37 37 H 1.09000 * 109.46982 * 179.97438 * 16 14 12 38 38 H 0.97005 * 119.99751 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.61948 * 140.02377 * 25 6 5 40 40 H 1.09006 * 113.61606 * 270.84274 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0790 -0.3236 5 6 2.7547 1.6496 1.3040 6 6 3.8226 2.3182 0.4223 7 1 4.8430 2.1410 0.7621 8 7 3.5531 3.7310 0.1437 9 16 4.5875 4.8972 0.7026 10 8 4.8135 4.6085 2.0755 11 8 4.0757 6.1409 0.2441 12 7 6.0373 4.6760 -0.0666 13 6 6.3039 5.3559 -1.3365 14 6 7.0531 3.8003 0.5229 15 1 6.6775 3.3865 1.4587 16 6 7.3690 2.6603 -0.4476 17 6 8.3060 4.5936 0.7908 18 1 8.3419 5.6450 0.5468 19 6 9.4062 3.9773 1.3483 20 7 9.3623 2.6970 1.6459 21 14 10.9591 4.9608 1.6810 22 1 10.7523 6.3699 1.2600 23 1 11.2700 4.9190 3.1325 24 1 12.0892 4.3758 0.9157 25 6 3.3755 1.3721 -0.7045 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.1187 0.7747 1.8428 30 1 2.2168 2.3487 1.9442 31 1 2.7686 3.9834 -0.3681 32 1 5.9768 4.7244 -2.1625 33 1 7.3728 5.5488 -1.4279 34 1 5.7606 6.3005 -1.3640 35 1 6.4628 2.0865 -0.6414 36 1 7.7445 3.0736 -1.3837 37 1 8.1252 2.0090 -0.0092 38 1 10.1362 2.2636 2.0385 39 1 3.3383 1.8473 -1.6848 40 1 3.9098 0.4220 -0.7147 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599511296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:15 Heat of formation + Delta-G solvation = -96.831243 kcal Electronic energy + Delta-G solvation = -22985.931253 eV Core-core repulsion = 19542.761321 eV Total energy + Delta-G solvation = -3443.169933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62493 -36.78725 -36.46959 -36.14447 -35.22651 -32.58105 -32.07163 -29.11719 -26.96163 -25.69503 -25.50682 -25.19784 -23.95733 -20.82478 -19.83922 -18.96289 -17.54415 -16.84945 -16.65711 -16.19314 -15.87525 -15.52942 -15.22603 -14.95952 -14.39142 -13.57157 -13.32732 -13.27700 -13.00674 -12.82156 -12.59680 -12.38906 -12.03343 -11.81181 -11.66138 -11.46176 -11.37411 -11.23151 -11.19199 -11.02173 -10.91849 -10.83422 -10.45157 -10.41281 -10.22087 -10.06654 -9.53888 -9.33067 -9.23235 -8.46204 -7.98741 -6.08608 -4.14806 1.19079 3.27483 3.35884 3.39452 3.47223 3.70551 4.09382 4.39405 4.51275 4.55351 4.79230 4.87777 5.00884 5.17096 5.21899 5.23290 5.40381 5.43435 5.50821 5.74433 5.81072 5.86549 6.00943 6.05284 6.12208 6.31307 6.42427 6.65020 6.76637 6.83390 6.99984 7.07710 7.17903 7.47909 7.61837 7.78069 8.03587 8.26367 8.87335 9.51029 10.97141 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.004929 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.843868 B = 5678.801409 C = 6304.995279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.059 3.941 4 H 0.085 0.915 5 C -0.166 4.166 6 C 0.133 3.867 7 H 0.116 0.884 8 N -1.117 6.117 9 S 2.779 3.221 10 O -0.971 6.971 11 O -0.998 6.998 12 N -0.988 5.988 13 C 0.098 3.902 14 C 0.265 3.735 15 H 0.059 0.941 16 C -0.149 4.149 17 C -0.520 4.520 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.139 4.139 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.407 0.593 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.012 0.988 36 H 0.033 0.967 37 H 0.092 0.908 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -3.778 -6.053 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.001 3.999 4 H 0.102 0.898 5 C -0.206 4.206 6 C 0.024 3.976 7 H 0.134 0.866 8 N -0.872 5.872 9 S 2.788 3.212 10 O -0.954 6.954 11 O -0.982 6.982 12 N -0.831 5.831 13 C -0.049 4.049 14 C 0.162 3.838 15 H 0.076 0.924 16 C -0.209 4.209 17 C -0.560 4.560 18 H 0.081 0.919 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.179 4.179 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.239 0.761 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.697 -3.450 -5.207 15.054 hybrid contribution 0.384 0.469 -0.365 0.708 sum -13.314 -2.981 -5.572 14.738 Atomic orbital electron populations 1.22761 0.81601 1.02514 0.99794 1.87951 1.19300 1.27703 1.94608 1.23908 0.93898 0.84769 0.97290 0.89760 1.24022 0.98015 1.01349 0.97190 1.21363 1.00067 0.79914 0.96214 0.86649 1.56106 1.40834 1.18135 1.72131 1.01982 0.72670 0.72531 0.74026 1.93612 1.85039 1.84942 1.31822 1.93535 1.80379 1.41345 1.82945 1.57647 1.30805 1.60263 1.34408 1.21286 1.03852 0.95391 0.84336 1.18775 0.86068 0.86998 0.91911 0.92356 1.22158 0.99819 0.99589 0.99284 1.21360 0.97038 0.96213 1.41369 0.91858 1.24898 0.98755 0.95021 0.95159 1.69861 1.30531 1.09559 1.42835 0.86450 0.82742 0.80229 0.78032 1.19750 1.20897 1.21001 1.23596 0.95209 1.00613 0.98448 0.89888 0.94109 0.94239 0.88113 0.90612 0.76131 0.94441 0.89842 0.92013 0.96863 0.94791 0.88909 0.92736 0.90360 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.47 10.72 -35.23 -0.38 -4.84 16 3 C 0.06 0.67 4.15 -25.77 -0.11 0.56 16 4 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 5 C -0.17 -2.12 7.73 -25.77 -0.20 -2.32 16 6 C 0.13 1.87 4.41 -67.12 -0.30 1.58 16 7 H 0.12 1.87 6.31 -51.93 -0.33 1.55 16 8 N -1.12 -15.97 5.79 -4.20 -0.02 -15.99 16 9 S 2.78 53.12 6.09 -107.50 -0.65 52.46 16 10 O -0.97 -22.26 16.46 -57.18 -0.94 -23.20 16 11 O -1.00 -20.25 16.74 -57.18 -0.96 -21.21 16 12 N -0.99 -19.94 3.12 -115.84 -0.36 -20.31 16 13 C 0.10 1.71 9.65 59.85 0.58 2.29 16 14 C 0.27 6.28 2.11 -69.08 -0.15 6.13 16 15 H 0.06 1.53 6.69 -51.93 -0.35 1.18 16 16 C -0.15 -3.24 8.92 37.16 0.33 -2.91 16 17 C -0.52 -13.75 7.99 -34.44 -0.28 -14.03 16 18 H 0.06 1.67 7.33 -52.49 -0.38 1.29 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.14 -1.64 7.69 -25.92 -0.20 -1.84 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.41 4.65 8.81 -34.47 -0.30 4.35 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 34 H 0.06 1.02 7.02 -51.93 -0.36 0.65 16 35 H 0.01 0.24 7.16 -51.93 -0.37 -0.14 16 36 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 37 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 38 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -31.70 335.28 -8.07 -39.77 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.10 Total: 3.61 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 0.69 Total: -7.58 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.24 Total: -59.96 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -2.28 Total: -49.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.65 Total: 52.46 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.70 -8.07 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599511296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.058 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds