Wall clock time and date at job start Tue Mar 31 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99975 * 2 1 4 4 C 1.53239 * 109.33952 * 187.24846 * 3 2 1 5 5 N 1.47463 * 108.62540 * 306.14958 * 4 3 2 6 6 S 1.65607 * 121.13324 * 231.25487 * 5 4 3 7 7 O 1.42105 * 104.27418 * 202.53898 * 6 5 4 8 8 O 1.42094 * 104.27845 * 330.39701 * 6 5 4 9 9 C 1.81394 * 104.44682 * 86.47035 * 6 5 4 10 10 C 1.53008 * 109.47267 * 171.67091 * 9 6 5 11 11 C 1.50696 * 109.47227 * 179.97438 * 10 9 6 12 12 H 1.08005 * 119.99878 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00064 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99670 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00263 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47555 * 59.99430 * 15 13 11 17 17 H 1.48497 * 109.47230 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47046 * 299.99755 * 15 13 11 19 19 C 1.47076 * 117.98600 * 51.08226 * 5 4 3 20 20 H 1.08997 * 109.63302 * 68.69756 * 19 5 4 21 21 C 1.53001 * 109.63012 * 189.08887 * 19 5 4 22 22 O 1.42895 * 109.47277 * 54.31247 * 21 19 5 23 23 C 1.46903 * 110.99611 * 124.29836 * 2 1 3 24 24 H 1.08994 * 109.47250 * 295.70009 * 1 2 3 25 25 H 1.09003 * 109.46953 * 55.70167 * 1 2 3 26 26 H 1.09000 * 109.46891 * 175.69557 * 1 2 3 27 27 H 1.08999 * 109.48924 * 307.21339 * 3 2 1 28 28 H 1.09004 * 109.49185 * 67.26443 * 3 2 1 29 29 H 1.09000 * 109.62732 * 65.88391 * 4 3 2 30 30 H 1.09001 * 109.62717 * 186.26627 * 4 3 2 31 31 H 1.09001 * 109.47425 * 291.67403 * 9 6 5 32 32 H 1.09002 * 109.47489 * 51.67447 * 9 6 5 33 33 H 1.08999 * 109.46827 * 300.00063 * 10 9 6 34 34 H 1.09002 * 109.46575 * 59.99796 * 10 9 6 35 35 H 0.97005 * 120.00053 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47478 * 174.31243 * 21 19 5 37 37 H 1.08997 * 109.46823 * 294.31118 * 21 19 5 38 38 H 0.96698 * 114.00149 * 179.97438 * 22 21 19 39 39 H 1.08994 * 109.49135 * 52.79521 * 23 2 1 40 40 H 1.08992 * 109.49470 * 292.70702 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5164 1.3312 -0.1824 5 7 4.0909 0.4446 0.8464 6 16 5.3421 0.9470 1.8080 7 8 5.9510 -0.2588 2.2491 8 8 6.0540 1.8746 1.0006 9 6 4.5355 1.7965 3.1930 10 6 5.5771 2.1301 4.2630 11 6 4.9072 2.8364 5.4133 12 1 3.8446 3.0278 5.3844 13 6 5.6506 3.2382 6.5027 14 7 6.9443 3.0047 6.5381 15 14 4.8201 4.1130 7.9290 16 1 3.7778 3.2304 8.5119 17 1 5.8313 4.4380 8.9668 18 1 4.1909 5.3669 7.4418 19 6 3.5164 -0.9009 0.9969 20 1 3.7562 -1.5017 0.1196 21 6 4.0901 -1.5677 2.2488 22 8 3.8818 -0.7182 3.3788 23 6 1.9954 -0.7728 1.1330 24 1 -0.3633 0.4456 0.9259 25 1 -0.3633 0.5791 -0.8490 26 1 -0.3633 -1.0248 -0.0771 27 1 1.5456 1.9337 -0.8183 28 1 1.7551 1.8533 0.9477 29 1 3.7563 0.9450 -1.1731 30 1 3.9251 2.3357 -0.0722 31 1 4.0741 2.7171 2.8356 32 1 3.7702 1.1487 3.6206 33 1 6.0385 1.2095 4.6204 34 1 6.3424 2.7779 3.8354 35 1 7.4674 3.2871 7.3047 36 1 3.5894 -2.5217 2.4143 37 1 5.1583 -1.7367 2.1133 38 1 4.2209 -1.0786 4.2096 39 1 1.5457 -1.7657 1.1362 40 1 1.7554 -0.2613 2.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:48 Heat of formation + Delta-G solvation = -90.948708 kcal Electronic energy + Delta-G solvation = -23549.271627 eV Core-core repulsion = 20106.356780 eV Total energy + Delta-G solvation = -3442.914847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.32595 -37.35953 -35.82199 -35.25826 -34.37520 -33.73560 -31.68063 -30.97958 -28.14985 -26.32843 -25.44330 -23.95712 -22.17853 -21.60676 -20.35846 -18.40668 -17.60933 -17.17069 -16.49185 -15.95358 -15.33566 -15.14966 -15.05464 -14.96458 -14.61999 -14.50203 -14.22153 -13.71084 -13.45678 -12.94291 -12.46886 -12.31611 -12.23313 -11.93343 -11.80208 -11.58922 -11.43651 -11.34695 -11.23663 -11.04316 -10.92788 -10.88556 -10.62111 -10.34308 -10.04813 -9.64789 -9.31152 -9.13512 -8.75503 -8.44779 -8.36456 -6.07666 -4.12062 0.99974 3.11265 3.28747 3.33676 3.35610 3.77164 4.35043 4.39040 4.50374 4.60466 4.74630 4.84443 5.07277 5.09366 5.24081 5.27480 5.31404 5.35287 5.45839 5.55323 5.57305 5.61757 5.67468 5.85487 5.92437 6.04402 6.11009 6.21982 6.40969 6.76301 6.86292 6.88732 6.90909 7.43197 7.48781 7.85159 7.86801 8.26409 8.91499 9.51936 11.03296 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.005277 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.408004 B = 5304.289564 C = 5690.722766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.038 3.962 4 C 0.129 3.871 5 N -1.001 6.001 6 S 2.602 3.398 7 O -0.963 6.963 8 O -0.983 6.983 9 C -0.581 4.581 10 C 0.034 3.966 11 C -0.514 4.514 12 H 0.059 0.941 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.170 3.830 20 H 0.089 0.911 21 C 0.025 3.975 22 O -0.575 6.575 23 C 0.045 3.955 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.034 0.966 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.048 0.952 37 H 0.125 0.875 38 H 0.393 0.607 39 H 0.079 0.921 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.518 -8.664 -12.170 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.091 4.091 4 C 0.004 3.996 5 N -0.837 5.837 6 S 2.704 3.296 7 O -0.953 6.953 8 O -0.974 6.974 9 C -0.715 4.715 10 C -0.005 4.005 11 C -0.554 4.554 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C 0.063 3.937 20 H 0.107 0.893 21 C -0.054 4.054 22 O -0.385 6.385 23 C -0.084 4.084 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.142 0.858 38 H 0.244 0.756 39 H 0.098 0.902 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.520 -8.642 -13.184 18.951 hybrid contribution -1.205 0.770 2.233 2.652 sum -11.725 -7.872 -10.950 17.870 Atomic orbital electron populations 1.22350 0.87278 1.02103 1.00508 1.61895 1.07538 1.13737 1.43594 1.22534 0.95788 0.89475 1.01315 1.21444 0.91927 0.94278 0.91998 1.58073 1.54449 1.21521 1.49675 1.05344 0.74092 0.74547 0.75588 1.93351 1.75635 1.43154 1.83191 1.93491 1.70198 1.65960 1.67731 1.30614 1.13516 1.11537 1.15830 1.18874 0.91823 0.97934 0.91829 1.20987 0.94688 1.37792 1.01923 0.92318 1.25049 0.94878 0.96009 0.98530 1.69948 1.05680 1.46705 1.30769 0.86577 0.79080 0.80073 0.81784 1.20170 1.21140 1.20195 1.21070 0.92115 0.83210 0.97267 0.89337 1.23354 1.04402 0.92531 0.85157 1.86288 1.84558 1.47808 1.19805 1.22531 0.94960 0.98522 0.92405 0.95590 0.91428 0.91442 0.89793 0.93920 0.90749 0.89104 0.87903 0.83542 0.94773 0.95921 0.92615 0.93352 0.85814 0.75577 0.90228 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.58 60.07 0.58 0.80 16 2 N -0.54 -5.93 4.88 -242.60 -1.18 -7.11 16 3 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 4 C 0.13 1.66 6.46 -3.39 -0.02 1.64 16 5 N -1.00 -14.81 3.23 -105.91 -0.34 -15.15 16 6 S 2.60 49.04 4.65 -107.50 -0.50 48.54 16 7 O -0.96 -18.91 12.53 -66.77 -0.84 -19.75 16 8 O -0.98 -21.51 16.95 -57.54 -0.98 -22.48 16 9 C -0.58 -11.77 5.49 37.16 0.20 -11.57 16 10 C 0.03 0.89 4.98 -27.88 -0.14 0.75 16 11 C -0.51 -14.33 9.11 -34.44 -0.31 -14.64 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 15 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.17 2.15 3.41 -67.49 -0.23 1.92 16 20 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 21 C 0.02 0.32 5.69 37.16 0.21 0.53 16 22 O -0.57 -8.21 7.35 -58.40 -0.43 -8.64 16 23 C 0.05 0.51 4.87 -3.69 -0.02 0.50 16 24 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.17 7.34 -51.93 -0.38 0.79 16 31 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 32 H 0.15 2.78 5.38 -51.92 -0.28 2.51 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.12 1.83 5.31 -54.49 -0.29 1.54 16 38 H 0.39 4.82 9.12 45.56 0.42 5.24 16 39 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 40 H 0.05 0.68 7.68 -51.93 -0.40 0.28 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -34.00 322.82 -9.08 -43.08 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.54 Total: 4.32 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 0.15 Total: -18.14 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.79 Total: -48.14 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -2.24 Total: -50.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 49.04 SS G_CDS: -0.50 Total: 48.54 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.00 -9.08 -43.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.869 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds