Wall clock time and date at job start Tue Mar 31 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99975 * 2 1 4 4 C 1.53239 * 109.33952 * 187.24846 * 3 2 1 5 5 N 1.47463 * 108.62540 * 306.14958 * 4 3 2 6 6 S 1.65607 * 121.13324 * 231.25487 * 5 4 3 7 7 O 1.42105 * 104.27418 * 202.53898 * 6 5 4 8 8 O 1.42094 * 104.27845 * 330.39701 * 6 5 4 9 9 C 1.81394 * 104.44682 * 86.47035 * 6 5 4 10 10 C 1.53008 * 109.47267 * 171.67091 * 9 6 5 11 11 C 1.50696 * 109.47227 * 179.97438 * 10 9 6 12 12 H 1.08005 * 119.99878 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00064 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99670 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00263 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47555 * 59.99430 * 15 13 11 17 17 H 1.48497 * 109.47230 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47046 * 299.99755 * 15 13 11 19 19 C 1.47076 * 117.98600 * 51.08226 * 5 4 3 20 20 H 1.08997 * 109.63302 * 68.69756 * 19 5 4 21 21 C 1.53001 * 109.63012 * 189.08887 * 19 5 4 22 22 O 1.42895 * 109.47277 * 54.31247 * 21 19 5 23 23 C 1.46903 * 110.99611 * 124.29836 * 2 1 3 24 24 H 1.08994 * 109.47250 * 295.70009 * 1 2 3 25 25 H 1.09003 * 109.46953 * 55.70167 * 1 2 3 26 26 H 1.09000 * 109.46891 * 175.69557 * 1 2 3 27 27 H 1.08999 * 109.48924 * 307.21339 * 3 2 1 28 28 H 1.09004 * 109.49185 * 67.26443 * 3 2 1 29 29 H 1.09000 * 109.62732 * 65.88391 * 4 3 2 30 30 H 1.09001 * 109.62717 * 186.26627 * 4 3 2 31 31 H 1.09001 * 109.47425 * 291.67403 * 9 6 5 32 32 H 1.09002 * 109.47489 * 51.67447 * 9 6 5 33 33 H 1.08999 * 109.46827 * 300.00063 * 10 9 6 34 34 H 1.09002 * 109.46575 * 59.99796 * 10 9 6 35 35 H 0.97005 * 120.00053 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47478 * 174.31243 * 21 19 5 37 37 H 1.08997 * 109.46823 * 294.31118 * 21 19 5 38 38 H 0.96698 * 114.00149 * 179.97438 * 22 21 19 39 39 H 1.08994 * 109.49135 * 52.79521 * 23 2 1 40 40 H 1.08992 * 109.49470 * 292.70702 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5164 1.3312 -0.1824 5 7 4.0909 0.4446 0.8464 6 16 5.3421 0.9470 1.8080 7 8 5.9510 -0.2588 2.2491 8 8 6.0540 1.8746 1.0006 9 6 4.5355 1.7965 3.1930 10 6 5.5771 2.1301 4.2630 11 6 4.9072 2.8364 5.4133 12 1 3.8446 3.0278 5.3844 13 6 5.6506 3.2382 6.5027 14 7 6.9443 3.0047 6.5381 15 14 4.8201 4.1130 7.9290 16 1 3.7778 3.2304 8.5119 17 1 5.8313 4.4380 8.9668 18 1 4.1909 5.3669 7.4418 19 6 3.5164 -0.9009 0.9969 20 1 3.7562 -1.5017 0.1196 21 6 4.0901 -1.5677 2.2488 22 8 3.8818 -0.7182 3.3788 23 6 1.9954 -0.7728 1.1330 24 1 -0.3633 0.4456 0.9259 25 1 -0.3633 0.5791 -0.8490 26 1 -0.3633 -1.0248 -0.0771 27 1 1.5456 1.9337 -0.8183 28 1 1.7551 1.8533 0.9477 29 1 3.7563 0.9450 -1.1731 30 1 3.9251 2.3357 -0.0722 31 1 4.0741 2.7171 2.8356 32 1 3.7702 1.1487 3.6206 33 1 6.0385 1.2095 4.6204 34 1 6.3424 2.7779 3.8354 35 1 7.4674 3.2871 7.3047 36 1 3.5894 -2.5217 2.4143 37 1 5.1583 -1.7367 2.1133 38 1 4.2209 -1.0786 4.2096 39 1 1.5457 -1.7657 1.1362 40 1 1.7554 -0.2613 2.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601469844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:47 Heat of formation + Delta-G solvation = -118.945737 kcal Electronic energy + Delta-G solvation = -23550.485669 eV Core-core repulsion = 20106.356780 eV Total energy + Delta-G solvation = -3444.128889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31242 -38.65968 -37.19724 -36.75520 -35.86420 -35.33271 -33.07465 -32.57915 -29.07649 -27.56085 -27.17271 -24.87304 -23.54965 -23.09080 -21.50052 -19.81918 -18.98686 -18.52766 -18.15209 -17.19633 -16.91644 -16.49950 -16.38835 -15.98091 -15.94171 -15.66032 -15.36765 -15.02790 -14.59414 -14.42988 -14.31533 -13.63558 -13.34051 -13.15097 -13.10805 -12.93777 -12.77469 -12.75696 -12.72960 -12.63210 -12.25675 -12.14002 -12.06943 -11.92850 -11.74122 -11.45619 -11.06979 -10.61429 -10.28161 -9.99178 -9.25586 -8.23740 -6.36986 -0.52196 1.39740 1.42911 1.51228 1.79190 2.38697 2.90464 3.01130 3.08966 3.32853 3.37632 3.53019 3.93275 4.07969 4.15764 4.23938 4.29071 4.40037 4.48748 4.57730 4.66942 4.69739 4.71674 4.76669 4.93126 4.99252 5.06460 5.07641 5.16584 5.31653 5.36195 5.46190 5.68790 5.74749 6.04353 6.11212 6.12539 6.75541 6.85256 7.32379 8.88040 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020047 B = 0.005277 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.408004 B = 5304.289564 C = 5690.722766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.041 3.959 4 C 0.120 3.880 5 N -0.994 5.994 6 S 2.622 3.378 7 O -0.973 6.973 8 O -1.017 7.017 9 C -0.580 4.580 10 C 0.033 3.967 11 C -0.534 4.534 12 H 0.067 0.933 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.970 3.030 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.163 3.837 20 H 0.107 0.893 21 C 0.024 3.976 22 O -0.592 6.592 23 C 0.050 3.950 24 H 0.020 0.980 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.031 0.969 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.161 0.839 33 H 0.015 0.985 34 H -0.010 1.010 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.400 0.600 39 H 0.103 0.897 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -9.353 -12.746 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.089 4.089 4 C -0.005 4.005 5 N -0.833 5.833 6 S 2.723 3.277 7 O -0.963 6.963 8 O -1.007 7.007 9 C -0.712 4.712 10 C -0.005 4.005 11 C -0.573 4.573 12 H 0.085 0.915 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.794 3.206 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.192 1.192 19 C 0.058 3.942 20 H 0.124 0.876 21 C -0.055 4.055 22 O -0.403 6.403 23 C -0.079 4.079 24 H 0.039 0.961 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.049 0.951 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.178 0.822 33 H 0.034 0.966 34 H 0.008 0.992 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.251 0.749 39 H 0.122 0.878 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.083 -9.327 -13.751 21.148 hybrid contribution -0.435 0.898 2.317 2.523 sum -13.519 -8.428 -11.433 19.609 Atomic orbital electron populations 1.22419 0.85735 1.03221 1.00810 1.61932 1.08882 1.13262 1.43078 1.22532 0.94476 0.90108 1.01736 1.21707 0.93197 0.93733 0.91886 1.57757 1.53933 1.22757 1.48895 1.04527 0.74399 0.73743 0.75050 1.93386 1.76603 1.42824 1.83524 1.93444 1.71610 1.67308 1.68328 1.30544 1.12416 1.12674 1.15530 1.18697 0.92464 0.96230 0.93144 1.21432 0.95278 1.37881 1.02730 0.91455 1.26041 0.95443 0.96725 1.01650 1.70092 1.07412 1.47976 1.31837 0.85430 0.78193 0.79061 0.77947 1.18713 1.20782 1.19241 1.21384 0.93087 0.81922 0.97855 0.87569 1.23369 1.03488 0.93870 0.84805 1.86208 1.84600 1.48905 1.20554 1.22490 0.93841 0.99717 0.91880 0.96119 0.90124 0.90131 0.87330 0.95085 0.89266 0.89736 0.87289 0.82162 0.96646 0.99184 0.92445 0.89779 0.88022 0.74861 0.87841 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.58 127.69 1.22 1.59 16 2 N -0.55 -10.27 4.88 -921.45 -4.50 -14.77 16 3 C 0.04 0.82 5.62 86.38 0.49 1.30 16 4 C 0.12 2.89 6.46 86.28 0.56 3.45 16 5 N -0.99 -28.38 3.23 -488.98 -1.58 -29.96 16 6 S 2.62 100.31 4.65 -56.49 -0.26 100.04 16 7 O -0.97 -38.88 12.53 -118.82 -1.49 -40.37 16 8 O -1.02 -45.52 16.95 -127.65 -2.16 -47.68 16 9 C -0.58 -23.97 5.49 71.98 0.40 -23.58 16 10 C 0.03 1.80 4.98 29.85 0.15 1.95 16 11 C -0.53 -30.26 9.11 25.60 0.23 -30.02 16 12 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 14 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 15 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 16 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 19 C 0.16 3.78 3.41 44.97 0.15 3.93 16 20 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 21 C 0.02 0.57 5.69 71.98 0.41 0.98 16 22 O -0.59 -16.54 7.35 -126.83 -0.93 -17.47 16 23 C 0.05 1.00 4.87 86.39 0.42 1.42 16 24 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.11 1.63 8.06 -2.39 -0.02 1.61 16 28 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.14 7.34 -2.39 -0.02 2.12 16 31 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 32 H 0.16 6.12 5.38 -2.39 -0.01 6.11 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.27 15.28 8.31 -92.70 -0.77 14.50 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 2.94 5.31 -42.99 -0.23 2.71 16 38 H 0.40 9.79 9.12 -74.06 -0.68 9.11 16 39 H 0.10 1.58 8.11 -2.39 -0.02 1.57 16 40 H 0.04 0.85 7.68 -2.39 -0.02 0.83 16 Total: -1.00 -74.07 322.82 -3.98 -78.06 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.14 Total: 21.68 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 4.49 Total: -38.52 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -5.79 Total: -101.54 kcal Atomic # 8 Polarization: -100.94 SS G_CDS: -4.59 Total: -105.52 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 100.31 SS G_CDS: -0.26 Total: 100.04 kcal Total: -74.07 -3.98 -78.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.888 kcal (2) G-P(sol) polarization free energy of solvation -74.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds