Wall clock time and date at job start Tue Mar 31 2020 02:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 120.00151 * 2 1 4 4 C 1.39712 * 120.00194 * 180.02562 * 2 1 3 5 5 C 1.38999 * 120.44982 * 359.97438 * 4 2 1 6 6 N 1.31794 * 120.81862 * 179.97438 * 5 4 2 7 7 C 1.31801 * 121.87920 * 0.02562 * 6 5 4 8 8 C 1.38966 * 120.81882 * 359.97438 * 7 6 5 9 9 N 1.39752 * 120.45523 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00285 * 212.75296 * 9 8 7 11 11 O 1.21374 * 119.99526 * 5.27173 * 10 9 8 12 12 C 1.49351 * 120.00176 * 185.26889 * 10 9 8 13 13 O 1.21356 * 119.99868 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00176 * 180.02562 * 12 10 9 15 15 C 1.46498 * 120.00146 * 179.97438 * 14 12 10 16 16 C 1.50696 * 109.47134 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00006 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47304 * 59.99831 * 20 18 16 22 22 H 1.48494 * 109.47293 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47407 * 300.00304 * 20 18 16 24 24 C 1.39124 * 120.45426 * 179.97438 * 4 2 1 25 25 H 1.08991 * 109.47083 * 269.99932 * 1 2 3 26 26 H 1.09003 * 109.46973 * 30.00584 * 1 2 3 27 27 H 1.08999 * 109.47083 * 149.99916 * 1 2 3 28 28 H 1.09001 * 109.47045 * 240.00442 * 3 2 1 29 29 H 1.09002 * 109.46871 * 359.97438 * 3 2 1 30 30 H 1.08993 * 109.46966 * 119.99789 * 3 2 1 31 31 H 1.07998 * 119.58962 * 359.95850 * 5 4 2 32 32 H 1.07993 * 119.59636 * 179.97438 * 7 6 5 33 33 H 0.97002 * 119.99799 * 32.76072 * 9 8 7 34 34 H 0.97003 * 119.99255 * 0.02562 * 14 12 10 35 35 H 1.08997 * 109.47075 * 300.00368 * 15 14 12 36 36 H 1.09002 * 109.46492 * 60.00478 * 15 14 12 37 37 H 0.96999 * 120.00008 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.85252 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 -0.0005 5 6 1.4781 -2.4191 -0.0005 6 7 2.1298 -3.5647 -0.0016 7 6 3.4467 -3.6163 -0.0021 8 6 4.2049 -2.4517 -0.0022 9 7 5.6010 -2.5154 -0.0022 10 6 6.3190 -1.5655 0.6292 11 8 5.7543 -0.7090 1.2779 12 6 7.8092 -1.5668 0.5307 13 8 8.3737 -2.4229 -0.1182 14 7 8.5272 -0.6172 1.1626 15 6 9.9890 -0.6188 1.0665 16 6 10.5457 0.5371 1.8569 17 1 9.8775 1.2058 2.3791 18 6 11.9082 0.7410 1.9136 19 7 12.7219 -0.0731 1.2773 20 14 12.5982 2.1734 2.8940 21 1 12.1962 2.0385 4.3172 22 1 14.0799 2.1726 2.7955 23 1 12.0671 3.4484 2.3485 24 6 3.5548 -1.2209 -0.0011 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.8241 1.3265 -0.8900 29 1 1.4892 2.0972 -0.0005 30 1 2.8241 1.3264 0.8900 31 1 0.3981 -2.4199 0.0006 32 1 3.9429 -4.5756 -0.0025 33 1 6.0533 -3.2432 -0.4568 34 1 8.0759 0.0669 1.6816 35 1 10.3785 -1.5543 1.4680 36 1 10.2844 -0.5208 0.0218 37 1 13.6804 0.0701 1.3174 38 1 4.1159 -0.2981 -0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873853794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:56 Heat of formation + Delta-G solvation = -18.963840 kcal Electronic energy + Delta-G solvation = -22356.970513 eV Core-core repulsion = 18814.025964 eV Total energy + Delta-G solvation = -3542.944549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09487 -39.85922 -38.13618 -37.05785 -35.39044 -34.29207 -32.41847 -31.46475 -30.14791 -28.57560 -27.74940 -25.45353 -24.99576 -23.32578 -22.16578 -21.27041 -19.99911 -18.82576 -17.79907 -17.01172 -16.77038 -16.30196 -15.96562 -15.51937 -15.40841 -15.31661 -15.03281 -14.50727 -14.26973 -13.95329 -13.55744 -13.31743 -13.15017 -12.95102 -12.69047 -12.51941 -12.09070 -11.99669 -11.94343 -11.38603 -11.07508 -11.04706 -10.93230 -10.56343 -10.37318 -9.82649 -9.53716 -9.14355 -8.86706 -8.61768 -8.16051 -7.62998 -6.25259 -4.33024 0.90700 1.31640 1.81935 2.52721 2.79626 3.22467 3.27295 3.29222 3.52602 3.80732 3.97695 4.28672 4.48802 4.65439 4.72704 4.81414 4.90248 4.99207 5.02458 5.11439 5.15899 5.18318 5.30213 5.33211 5.51236 5.80331 5.87472 6.05687 6.47392 6.82282 6.91289 7.03450 7.06540 7.15658 7.32062 7.50325 7.76552 7.83138 7.93846 8.31867 8.50543 8.78003 9.33369 10.84755 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.003049 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.461011 B = 9181.407391 C =10156.108728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.630 5.630 3 C 0.092 3.908 4 C 0.184 3.816 5 C 0.005 3.995 6 N -0.426 5.426 7 C 0.018 3.982 8 C 0.150 3.850 9 N -0.646 5.646 10 C 0.510 3.490 11 O -0.503 6.503 12 C 0.491 3.509 13 O -0.534 6.534 14 N -0.670 5.670 15 C 0.247 3.753 16 C -0.548 4.548 17 H 0.066 0.934 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.907 3.093 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.161 4.161 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.426 0.574 34 H 0.404 0.596 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.268 0.732 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.889 -0.665 -3.554 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.342 5.342 3 C -0.051 4.051 4 C 0.079 3.921 5 C -0.158 4.158 6 N -0.133 5.133 7 C -0.144 4.144 8 C 0.052 3.948 9 N -0.294 5.294 10 C 0.293 3.707 11 O -0.376 6.376 12 C 0.270 3.730 13 O -0.412 6.412 14 N -0.319 5.319 15 C 0.127 3.873 16 C -0.587 4.587 17 H 0.084 0.916 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.734 3.266 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.193 4.193 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.265 0.735 34 H 0.239 0.761 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.134 -1.243 -3.579 23.442 hybrid contribution 0.988 1.576 0.548 1.939 sum -22.145 0.333 -3.031 22.354 Atomic orbital electron populations 1.21710 0.79074 1.02828 1.01444 1.46290 1.05085 1.02966 1.79820 1.21690 0.97099 0.84355 1.01958 1.18703 0.91270 0.87255 0.94868 1.22259 0.99958 0.86070 1.07533 1.67457 1.08891 1.28210 1.08731 1.22301 0.89299 0.96746 1.06080 1.18586 0.83146 0.94636 0.98402 1.43198 1.03987 1.28859 1.53323 1.20970 0.89693 0.81371 0.78693 1.90736 1.72481 1.36230 1.38125 1.19637 0.86365 0.84286 0.82747 1.90745 1.71510 1.37489 1.41494 1.46429 1.10602 1.27507 1.47325 1.19357 0.71304 0.98316 0.98340 1.21156 0.92368 1.12406 1.32725 0.91605 1.24937 0.96615 0.96825 0.95458 1.69953 1.03890 1.36954 1.41395 0.86416 0.77854 0.82005 0.80339 1.19938 1.21002 1.19960 1.21066 0.92343 0.98497 1.07415 0.93079 0.91258 0.91164 0.92631 0.90659 0.92059 0.82962 0.82583 0.73484 0.76101 0.94644 0.94655 0.92219 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.17 59.85 0.61 1.16 16 2 N -0.63 -5.87 3.41 -187.44 -0.64 -6.51 16 3 C 0.09 0.76 9.43 59.85 0.56 1.33 16 4 C 0.18 2.15 6.56 -83.66 -0.55 1.60 16 5 C 0.00 0.06 10.38 -17.29 -0.18 -0.12 16 6 N -0.43 -5.37 10.34 -12.90 -0.13 -5.50 16 7 C 0.02 0.22 11.11 -17.30 -0.19 0.02 16 8 C 0.15 1.98 6.31 -83.62 -0.53 1.46 16 9 N -0.65 -8.75 5.34 -10.22 -0.05 -8.81 16 10 C 0.51 8.38 7.65 -11.63 -0.09 8.29 16 11 O -0.50 -8.81 14.16 5.48 0.08 -8.73 16 12 C 0.49 9.55 7.89 -11.63 -0.09 9.46 16 13 O -0.53 -11.46 16.48 5.49 0.09 -11.37 16 14 N -0.67 -14.06 5.54 -61.95 -0.34 -14.40 16 15 C 0.25 6.27 5.43 -5.20 -0.03 6.24 16 16 C -0.55 -14.54 9.28 -34.44 -0.32 -14.86 16 17 H 0.07 1.65 7.60 -52.49 -0.40 1.25 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -25.29 13.29 55.43 0.74 -24.55 16 20 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.16 -2.15 8.00 -38.90 -0.31 -2.46 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 27 H 0.07 0.36 6.22 -51.93 -0.32 0.04 16 28 H 0.06 0.47 7.98 -51.93 -0.41 0.06 16 29 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 30 H 0.06 0.58 7.99 -51.93 -0.41 0.17 16 31 H 0.15 1.31 6.15 -52.49 -0.32 0.98 16 32 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.43 5.02 8.30 -40.82 -0.34 4.68 16 34 H 0.40 7.84 7.79 -40.82 -0.32 7.52 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 38 H 0.15 2.08 5.30 -52.49 -0.28 1.80 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -31.65 330.91 -5.96 -37.61 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.45 Total: 8.00 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: -1.21 Total: 13.79 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.43 Total: -59.77 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.17 Total: -20.10 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.65 -5.96 -37.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873853794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.647 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds