Wall clock time and date at job start Tue Mar 31 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 120.00151 * 2 1 4 4 C 1.39712 * 120.00194 * 180.02562 * 2 1 3 5 5 C 1.38999 * 120.44982 * 359.97438 * 4 2 1 6 6 N 1.31794 * 120.81862 * 179.97438 * 5 4 2 7 7 C 1.31801 * 121.87920 * 0.02562 * 6 5 4 8 8 C 1.38966 * 120.81882 * 359.97438 * 7 6 5 9 9 N 1.39752 * 120.45523 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00285 * 212.75296 * 9 8 7 11 11 O 1.21374 * 119.99526 * 5.27173 * 10 9 8 12 12 C 1.49351 * 120.00176 * 185.26889 * 10 9 8 13 13 O 1.21356 * 119.99868 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00176 * 180.02562 * 12 10 9 15 15 C 1.46498 * 120.00146 * 179.97438 * 14 12 10 16 16 C 1.50696 * 109.47134 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00006 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47304 * 59.99831 * 20 18 16 22 22 H 1.48494 * 109.47293 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47407 * 300.00304 * 20 18 16 24 24 C 1.39124 * 120.45426 * 179.97438 * 4 2 1 25 25 H 1.08991 * 109.47083 * 269.99932 * 1 2 3 26 26 H 1.09003 * 109.46973 * 30.00584 * 1 2 3 27 27 H 1.08999 * 109.47083 * 149.99916 * 1 2 3 28 28 H 1.09001 * 109.47045 * 240.00442 * 3 2 1 29 29 H 1.09002 * 109.46871 * 359.97438 * 3 2 1 30 30 H 1.08993 * 109.46966 * 119.99789 * 3 2 1 31 31 H 1.07998 * 119.58962 * 359.95850 * 5 4 2 32 32 H 1.07993 * 119.59636 * 179.97438 * 7 6 5 33 33 H 0.97002 * 119.99799 * 32.76072 * 9 8 7 34 34 H 0.97003 * 119.99255 * 0.02562 * 14 12 10 35 35 H 1.08997 * 109.47075 * 300.00368 * 15 14 12 36 36 H 1.09002 * 109.46492 * 60.00478 * 15 14 12 37 37 H 0.96999 * 120.00008 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.85252 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 -0.0005 5 6 1.4781 -2.4191 -0.0005 6 7 2.1298 -3.5647 -0.0016 7 6 3.4467 -3.6163 -0.0021 8 6 4.2049 -2.4517 -0.0022 9 7 5.6010 -2.5154 -0.0022 10 6 6.3190 -1.5655 0.6292 11 8 5.7543 -0.7090 1.2779 12 6 7.8092 -1.5668 0.5307 13 8 8.3737 -2.4229 -0.1182 14 7 8.5272 -0.6172 1.1626 15 6 9.9890 -0.6188 1.0665 16 6 10.5457 0.5371 1.8569 17 1 9.8775 1.2058 2.3791 18 6 11.9082 0.7410 1.9136 19 7 12.7219 -0.0731 1.2773 20 14 12.5982 2.1734 2.8940 21 1 12.1962 2.0385 4.3172 22 1 14.0799 2.1726 2.7955 23 1 12.0671 3.4484 2.3485 24 6 3.5548 -1.2209 -0.0011 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.8241 1.3265 -0.8900 29 1 1.4892 2.0972 -0.0005 30 1 2.8241 1.3264 0.8900 31 1 0.3981 -2.4199 0.0006 32 1 3.9429 -4.5756 -0.0025 33 1 6.0533 -3.2432 -0.4568 34 1 8.0759 0.0669 1.6816 35 1 10.3785 -1.5543 1.4680 36 1 10.2844 -0.5208 0.0218 37 1 13.6804 0.0701 1.3174 38 1 4.1159 -0.2981 -0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873853794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:55 Heat of formation + Delta-G solvation = -43.162344 kcal Electronic energy + Delta-G solvation = -22358.019839 eV Core-core repulsion = 18814.025964 eV Total energy + Delta-G solvation = -3543.993875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.28155 -41.06121 -39.62274 -37.88687 -36.74767 -35.95372 -34.38428 -32.38819 -31.07935 -29.77218 -29.15014 -26.58436 -26.12561 -24.74768 -23.54978 -22.31534 -21.47069 -20.26955 -18.84337 -18.36448 -18.02095 -17.61885 -17.27378 -16.98223 -16.73434 -16.44663 -16.14800 -15.88457 -15.44173 -15.19731 -14.92359 -14.55451 -14.22979 -14.07586 -13.90915 -13.54110 -13.36217 -13.23154 -13.03985 -12.83218 -12.70789 -12.53641 -12.23646 -12.15501 -11.56486 -11.38844 -11.02473 -10.84440 -10.46293 -10.08022 -9.65777 -8.40928 -8.31958 -6.48310 -0.20887 0.38137 0.50897 1.18802 1.44437 1.47000 1.55640 2.02902 2.09048 2.35369 2.64465 2.85222 3.03490 3.38327 3.68963 3.86384 3.93441 3.96372 4.12228 4.32969 4.47219 4.49766 4.73956 4.81947 4.85764 4.89518 4.96547 4.99597 5.08336 5.16541 5.23056 5.46872 5.54238 5.76334 5.84871 6.15294 6.28668 6.41517 6.55703 6.67963 6.96531 7.01829 7.24691 8.79468 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.003049 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.461011 B = 9181.407391 C =10156.108728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.631 5.631 3 C 0.090 3.910 4 C 0.182 3.818 5 C 0.010 3.990 6 N -0.439 5.439 7 C 0.016 3.984 8 C 0.133 3.867 9 N -0.629 5.629 10 C 0.522 3.478 11 O -0.513 6.513 12 C 0.495 3.505 13 O -0.555 6.555 14 N -0.671 5.671 15 C 0.263 3.737 16 C -0.563 4.563 17 H 0.080 0.920 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.264 1.264 24 C -0.179 4.179 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.434 0.566 34 H 0.413 0.587 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.271 0.729 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.153 0.307 -3.049 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.341 5.341 3 C -0.053 4.053 4 C 0.075 3.925 5 C -0.154 4.154 6 N -0.146 5.146 7 C -0.145 4.145 8 C 0.036 3.964 9 N -0.276 5.276 10 C 0.304 3.696 11 O -0.388 6.388 12 C 0.275 3.725 13 O -0.434 6.434 14 N -0.321 5.321 15 C 0.142 3.858 16 C -0.601 4.601 17 H 0.098 0.902 18 C -0.190 4.190 19 N -0.563 5.563 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.211 4.211 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.198 0.802 32 H 0.194 0.806 33 H 0.275 0.725 34 H 0.250 0.750 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.080 0.920 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.468 -0.278 -3.086 25.656 hybrid contribution 1.532 1.245 0.327 2.001 sum -23.936 0.967 -2.759 24.114 Atomic orbital electron populations 1.21967 0.76892 1.04431 1.02395 1.46583 1.06493 1.02369 1.78645 1.21754 0.97716 0.84981 1.00879 1.18816 0.90789 0.88555 0.94385 1.22721 1.01219 0.85480 1.05984 1.67532 1.08968 1.28871 1.09258 1.22567 0.89286 0.97109 1.05524 1.18697 0.82406 0.95280 0.99982 1.42986 1.04392 1.27975 1.52269 1.20146 0.87909 0.82143 0.79380 1.90742 1.72052 1.36968 1.39028 1.20107 0.87893 0.83106 0.81417 1.90728 1.72566 1.38087 1.42057 1.46148 1.09058 1.28598 1.48323 1.18841 0.73797 0.96928 0.96271 1.21538 0.93055 1.12722 1.32800 0.90191 1.25957 0.96971 0.99654 0.96373 1.70091 1.04307 1.38996 1.42926 0.85247 0.76926 0.78415 0.78918 1.18901 1.20801 1.18814 1.21093 0.93378 0.98068 1.08564 0.92346 0.89189 0.90139 0.93207 0.87768 0.93712 0.80223 0.80622 0.72520 0.75035 0.97620 0.97585 0.92017 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.17 127.77 1.30 2.05 16 2 N -0.63 -10.46 3.41 -746.95 -2.55 -13.00 16 3 C 0.09 1.36 9.43 127.77 1.20 2.57 16 4 C 0.18 3.96 6.56 38.28 0.25 4.21 16 5 C 0.01 0.19 10.38 84.88 0.88 1.07 16 6 N -0.44 -10.25 10.34 -194.71 -2.01 -12.27 16 7 C 0.02 0.37 11.11 84.87 0.94 1.32 16 8 C 0.13 3.43 6.31 38.28 0.24 3.67 16 9 N -0.63 -16.82 5.34 -304.59 -1.63 -18.45 16 10 C 0.52 17.20 7.65 87.24 0.67 17.87 16 11 O -0.51 -17.99 14.16 -3.32 -0.05 -18.04 16 12 C 0.49 19.63 7.89 87.24 0.69 20.31 16 13 O -0.55 -24.45 16.48 -3.27 -0.05 -24.51 16 14 N -0.67 -28.86 5.54 -468.26 -2.59 -31.46 16 15 C 0.26 13.90 5.43 85.63 0.46 14.36 16 16 C -0.56 -30.19 9.28 25.60 0.24 -29.96 16 17 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 18 C 0.01 0.59 5.46 84.66 0.46 1.06 16 19 N -0.93 -53.95 13.29 21.45 0.28 -53.67 16 20 Si 0.98 41.73 29.54 68.60 2.03 43.75 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 C -0.18 -4.68 8.00 22.71 0.18 -4.50 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.09 0.45 7.92 -2.39 -0.02 0.43 16 27 H 0.08 0.56 6.22 -2.39 -0.01 0.54 16 28 H 0.05 0.81 7.98 -2.39 -0.02 0.79 16 29 H 0.10 0.95 7.79 -2.39 -0.02 0.93 16 30 H 0.04 0.83 7.99 -2.39 -0.02 0.81 16 31 H 0.18 2.50 6.15 -2.91 -0.02 2.48 16 32 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.43 10.06 8.30 -92.71 -0.77 9.29 16 34 H 0.41 16.18 7.79 -92.71 -0.72 15.46 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.13 3.82 5.30 -2.91 -0.02 3.80 16 Total: -1.00 -68.62 330.91 0.58 -68.04 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.37 Total: 25.55 kcal Atomic # 6 Polarization: 26.52 SS G_CDS: 7.52 Total: 34.04 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -8.50 Total: -128.84 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.10 Total: -42.54 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -68.62 0.58 -68.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873853794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.879 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds