Wall clock time and date at job start Tue Mar 31 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46995 * 2 1 4 4 C 1.46494 * 120.00309 * 274.99919 * 3 2 1 5 5 C 1.50697 * 109.47020 * 275.00320 * 4 3 2 6 6 H 1.08002 * 120.00380 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99895 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00339 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00030 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47338 * 89.99480 * 9 7 5 11 11 H 1.48497 * 109.47204 * 209.99995 * 9 7 5 12 12 H 1.48504 * 109.46621 * 329.99347 * 9 7 5 13 13 S 1.65605 * 119.99527 * 94.99885 * 3 2 1 14 14 O 1.42096 * 106.40590 * 336.45948 * 13 3 2 15 15 O 1.42108 * 106.39755 * 203.53861 * 13 3 2 16 16 N 1.65597 * 107.21939 * 90.00151 * 13 3 2 17 17 C 1.46499 * 119.99926 * 64.71969 * 16 13 3 18 18 H 1.08997 * 112.85367 * 346.47255 * 17 16 13 19 19 C 1.53774 * 113.61461 * 117.78216 * 17 16 13 20 20 C 1.53779 * 87.08351 * 89.11806 * 19 17 16 21 21 H 1.09004 * 113.61211 * 270.88185 * 20 19 17 22 22 C 1.52995 * 113.69234 * 139.99769 * 20 19 17 23 23 O 1.42897 * 109.47738 * 87.46214 * 22 20 19 24 24 C 1.53777 * 87.08017 * 25.43152 * 20 19 17 25 25 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47363 * 300.00357 * 1 2 3 27 27 H 1.08999 * 109.46869 * 59.99851 * 1 2 3 28 28 H 1.08994 * 109.47346 * 240.00375 * 2 1 3 29 29 H 1.08999 * 109.46869 * 120.00149 * 2 1 3 30 30 H 1.09004 * 109.47032 * 35.00122 * 4 3 2 31 31 H 1.09000 * 109.47230 * 154.99632 * 4 3 2 32 32 H 0.96996 * 120.00481 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00224 * 245.00182 * 16 13 3 34 34 H 1.09001 * 113.61629 * 203.66632 * 19 17 16 35 35 H 1.09000 * 113.61594 * 334.56468 * 19 17 16 36 36 H 1.09004 * 109.46962 * 207.46140 * 22 20 19 37 37 H 1.09004 * 109.47018 * 327.45682 * 22 20 19 38 38 H 0.96695 * 114.00406 * 180.02562 * 23 22 20 39 39 H 1.09002 * 113.61093 * 220.02028 * 24 20 19 40 40 H 1.09001 * 113.61256 * 89.12388 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.4948 1.7889 -1.8822 6 1 4.1724 1.1117 -1.3835 7 6 3.8529 2.3615 -3.0842 8 7 3.0281 3.1865 -3.6913 9 14 5.5094 1.9644 -3.8512 10 1 5.3731 0.7819 -4.7389 11 1 5.9789 3.1281 -4.6452 12 1 6.4929 1.6678 -2.7788 13 16 2.4121 2.1202 1.4288 14 8 1.6868 1.4415 2.4449 15 8 2.3056 3.5187 1.1999 16 7 4.0143 1.8137 1.7139 17 6 5.0346 2.3474 0.8082 18 1 4.6171 2.7209 -0.1268 19 6 6.0077 3.3270 1.4852 20 6 6.8755 2.1048 1.8284 21 1 6.6197 1.6414 2.7813 22 6 8.3771 2.3539 1.6732 23 8 8.8987 2.8936 2.8892 24 6 6.2376 1.4094 0.6142 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3617 1.8098 -1.9452 31 1 2.0921 3.1803 -1.0755 32 1 3.2799 3.5890 -4.5371 33 1 4.2770 1.2774 2.4783 34 1 6.4837 4.0194 0.7909 35 1 5.5885 3.8244 2.3598 36 1 8.8800 1.4135 1.4480 37 1 8.5461 3.0601 0.8602 38 1 9.8477 3.0772 2.8629 39 1 6.0041 0.3586 0.7858 40 1 6.7766 1.5774 -0.3182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922062698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:42 Heat of formation + Delta-G solvation = -115.161450 kcal Electronic energy + Delta-G solvation = -23213.897453 eV Core-core repulsion = 19769.932663 eV Total energy + Delta-G solvation = -3443.964790 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.25311 -36.62234 -36.36463 -36.00743 -35.15547 -32.79166 -32.38607 -29.94693 -27.46209 -26.63522 -25.38053 -23.15053 -22.30118 -21.67446 -19.49617 -18.62872 -17.30976 -17.16720 -16.81577 -16.34235 -15.68807 -15.27458 -14.91781 -14.65720 -14.42132 -13.88334 -13.41827 -13.33014 -12.91138 -12.61402 -12.45898 -12.08516 -11.99707 -11.97432 -11.68323 -11.48486 -11.35171 -11.26896 -11.09581 -10.98511 -10.63930 -10.50527 -10.48477 -10.38395 -10.10249 -10.06337 -9.83063 -9.60125 -8.94668 -8.55270 -8.06915 -6.17049 -4.23493 1.34022 3.18590 3.25149 3.27685 3.56538 4.15543 4.22001 4.29329 4.76491 4.87291 5.05072 5.13923 5.23300 5.24812 5.42816 5.47902 5.54586 5.63753 5.77221 5.79645 5.92661 6.03889 6.07019 6.13181 6.32309 6.33804 6.38750 6.42464 6.66296 6.69498 6.91156 7.32286 7.37427 7.49227 7.56832 7.68012 7.81410 8.10560 8.81960 9.41481 10.90567 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.008305 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.816303 B = 3370.519675 C = 5157.629781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.544 4.544 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.270 1.270 13 S 2.787 3.213 14 O -1.002 7.002 15 O -0.978 6.978 16 N -1.110 6.110 17 C 0.125 3.875 18 H 0.141 0.859 19 C -0.145 4.145 20 C -0.114 4.114 21 H 0.092 0.908 22 C 0.084 3.916 23 O -0.574 6.574 24 C -0.134 4.134 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.374 0.626 39 H 0.073 0.927 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.948 -4.709 7.482 11.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.119 3.881 5 C -0.583 4.583 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.194 1.194 13 S 2.794 3.206 14 O -0.986 6.986 15 O -0.961 6.961 16 N -0.865 5.865 17 C 0.017 3.983 18 H 0.158 0.842 19 C -0.184 4.184 20 C -0.132 4.132 21 H 0.110 0.890 22 C 0.007 3.993 23 O -0.379 6.379 24 C -0.173 4.173 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.220 0.780 39 H 0.091 0.909 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.627 -4.008 7.877 10.477 hybrid contribution 1.982 -0.695 -0.741 2.227 sum 7.609 -4.703 7.136 11.443 Atomic orbital electron populations 1.22209 0.97014 1.01339 1.02376 1.20952 0.93584 0.82889 1.02064 1.57702 1.78611 1.22904 1.24122 1.19230 0.97349 0.92333 0.79146 1.21634 1.02419 1.28108 1.06174 0.91309 1.24965 0.97168 0.94793 0.96827 1.69930 1.35941 1.29469 1.16944 0.86653 0.84095 0.77984 0.79589 1.20672 1.21163 1.19433 1.01738 0.72523 0.73734 0.72575 1.93542 1.70519 1.76344 1.58244 1.93584 1.85833 1.31067 1.85652 1.55828 1.25244 1.67898 1.37556 1.21944 0.88355 0.93875 0.94137 0.84194 1.23469 0.97346 0.96396 1.01225 1.22619 0.92220 0.98857 0.99535 0.88975 1.22270 0.94399 0.96643 0.86019 1.86509 1.27848 1.86386 1.37187 1.23297 0.96965 0.99437 0.97644 0.92407 0.92668 0.92093 0.90255 0.91962 0.94368 0.93067 0.92516 0.76427 0.89336 0.91084 0.93897 0.93373 0.78019 0.90870 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.25 6.06 -4.04 -0.02 2.22 16 3 N -0.99 -19.84 2.82 -115.67 -0.33 -20.16 16 4 C 0.24 5.73 5.36 -5.20 -0.03 5.70 16 5 C -0.54 -13.18 7.02 -34.44 -0.24 -13.42 16 6 H 0.07 1.57 6.96 -52.49 -0.37 1.21 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -24.22 13.29 55.43 0.74 -23.49 16 9 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 S 2.79 55.01 6.04 -107.50 -0.65 54.36 16 14 O -1.00 -20.45 17.11 -57.17 -0.98 -21.43 16 15 O -0.98 -22.77 16.46 -57.17 -0.94 -23.71 16 16 N -1.11 -18.31 5.78 -4.20 -0.02 -18.34 16 17 C 0.12 2.12 3.76 -67.12 -0.25 1.87 16 18 H 0.14 2.84 5.24 -51.93 -0.27 2.57 16 19 C -0.14 -2.23 7.43 -25.92 -0.19 -2.42 16 20 C -0.11 -1.53 3.83 -89.81 -0.34 -1.87 16 21 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 22 C 0.08 0.98 6.89 37.16 0.26 1.24 16 23 O -0.57 -6.75 13.66 -35.23 -0.48 -7.23 16 24 C -0.13 -1.94 7.38 -25.92 -0.19 -2.14 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 29 H 0.06 0.95 7.61 -51.93 -0.40 0.56 16 30 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.40 5.58 8.78 -34.47 -0.30 5.28 16 34 H 0.09 1.30 7.90 -51.93 -0.41 0.89 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.54 7.85 -51.93 -0.41 0.13 16 38 H 0.37 2.57 9.12 45.56 0.42 2.99 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -31.04 339.40 -8.76 -39.80 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.45 Total: 10.27 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -0.74 Total: -9.52 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.39 Total: -61.99 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -2.40 Total: -52.37 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.65 Total: 54.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.04 -8.76 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922062698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.365 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds