Wall clock time and date at job start Tue Mar 31 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46995 * 2 1 4 4 C 1.46494 * 120.00309 * 274.99919 * 3 2 1 5 5 C 1.50697 * 109.47020 * 275.00320 * 4 3 2 6 6 H 1.08002 * 120.00380 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99895 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00339 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00030 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47338 * 89.99480 * 9 7 5 11 11 H 1.48497 * 109.47204 * 209.99995 * 9 7 5 12 12 H 1.48504 * 109.46621 * 329.99347 * 9 7 5 13 13 S 1.65605 * 119.99527 * 94.99885 * 3 2 1 14 14 O 1.42096 * 106.40590 * 336.45948 * 13 3 2 15 15 O 1.42108 * 106.39755 * 203.53861 * 13 3 2 16 16 N 1.65597 * 107.21939 * 90.00151 * 13 3 2 17 17 C 1.46499 * 119.99926 * 64.71969 * 16 13 3 18 18 H 1.08997 * 112.85367 * 346.47255 * 17 16 13 19 19 C 1.53774 * 113.61461 * 117.78216 * 17 16 13 20 20 C 1.53779 * 87.08351 * 89.11806 * 19 17 16 21 21 H 1.09004 * 113.61211 * 270.88185 * 20 19 17 22 22 C 1.52995 * 113.69234 * 139.99769 * 20 19 17 23 23 O 1.42897 * 109.47738 * 87.46214 * 22 20 19 24 24 C 1.53777 * 87.08017 * 25.43152 * 20 19 17 25 25 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47363 * 300.00357 * 1 2 3 27 27 H 1.08999 * 109.46869 * 59.99851 * 1 2 3 28 28 H 1.08994 * 109.47346 * 240.00375 * 2 1 3 29 29 H 1.08999 * 109.46869 * 120.00149 * 2 1 3 30 30 H 1.09004 * 109.47032 * 35.00122 * 4 3 2 31 31 H 1.09000 * 109.47230 * 154.99632 * 4 3 2 32 32 H 0.96996 * 120.00481 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00224 * 245.00182 * 16 13 3 34 34 H 1.09001 * 113.61629 * 203.66632 * 19 17 16 35 35 H 1.09000 * 113.61594 * 334.56468 * 19 17 16 36 36 H 1.09004 * 109.46962 * 207.46140 * 22 20 19 37 37 H 1.09004 * 109.47018 * 327.45682 * 22 20 19 38 38 H 0.96695 * 114.00406 * 180.02562 * 23 22 20 39 39 H 1.09002 * 113.61093 * 220.02028 * 24 20 19 40 40 H 1.09001 * 113.61256 * 89.12388 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.4948 1.7889 -1.8822 6 1 4.1724 1.1117 -1.3835 7 6 3.8529 2.3615 -3.0842 8 7 3.0281 3.1865 -3.6913 9 14 5.5094 1.9644 -3.8512 10 1 5.3731 0.7819 -4.7389 11 1 5.9789 3.1281 -4.6452 12 1 6.4929 1.6678 -2.7788 13 16 2.4121 2.1202 1.4288 14 8 1.6868 1.4415 2.4449 15 8 2.3056 3.5187 1.1999 16 7 4.0143 1.8137 1.7139 17 6 5.0346 2.3474 0.8082 18 1 4.6171 2.7209 -0.1268 19 6 6.0077 3.3270 1.4852 20 6 6.8755 2.1048 1.8284 21 1 6.6197 1.6414 2.7813 22 6 8.3771 2.3539 1.6732 23 8 8.8987 2.8936 2.8892 24 6 6.2376 1.4094 0.6142 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3617 1.8098 -1.9452 31 1 2.0921 3.1803 -1.0755 32 1 3.2799 3.5890 -4.5371 33 1 4.2770 1.2774 2.4783 34 1 6.4837 4.0194 0.7909 35 1 5.5885 3.8244 2.3598 36 1 8.8800 1.4135 1.4480 37 1 8.5461 3.0601 0.8602 38 1 9.8477 3.0772 2.8629 39 1 6.0041 0.3586 0.7858 40 1 6.7766 1.5774 -0.3182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922062698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:42 Heat of formation + Delta-G solvation = -140.380417 kcal Electronic energy + Delta-G solvation = -23214.991030 eV Core-core repulsion = 19769.932663 eV Total energy + Delta-G solvation = -3445.058366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.42491 -38.27508 -37.66384 -37.26739 -36.86462 -34.65156 -33.71085 -31.50932 -28.62643 -28.32172 -26.55733 -24.89348 -23.49858 -23.17719 -20.82732 -20.03002 -18.77301 -18.52457 -18.22174 -18.06715 -17.17989 -16.68594 -16.23088 -16.03422 -15.65851 -15.40492 -14.79525 -14.64881 -14.55651 -13.87129 -13.76495 -13.63656 -13.57188 -13.31162 -13.20753 -13.12092 -13.00660 -12.75285 -12.67400 -12.60963 -12.23632 -12.04071 -11.77392 -11.62694 -11.58503 -11.50950 -11.16680 -10.69264 -10.51265 -10.29233 -9.75454 -8.11010 -6.23481 -0.26102 1.48213 1.49119 1.58918 2.02453 2.47513 2.64198 3.20459 3.30184 3.47151 3.68064 3.78983 3.98360 4.02542 4.18162 4.37628 4.46131 4.50878 4.57054 4.64434 4.72983 4.74273 4.88138 4.93033 5.00968 5.14235 5.17128 5.18675 5.29078 5.31427 5.43683 5.56726 5.64562 5.81774 5.94507 6.16326 6.27957 6.88792 6.95821 7.45421 8.97211 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.008305 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.816303 B = 3370.519675 C = 5157.629781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.994 5.994 4 C 0.256 3.744 5 C -0.535 4.535 6 H 0.085 0.915 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.294 1.294 12 H -0.241 1.241 13 S 2.800 3.200 14 O -1.007 7.007 15 O -1.018 7.018 16 N -1.094 6.094 17 C 0.109 3.891 18 H 0.106 0.894 19 C -0.149 4.149 20 C -0.102 4.102 21 H 0.096 0.904 22 C 0.085 3.915 23 O -0.593 6.593 24 C -0.124 4.124 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.263 0.737 33 H 0.420 0.580 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.395 0.605 39 H 0.087 0.913 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -6.728 8.362 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.574 4.574 6 H 0.103 0.897 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.164 1.164 13 S 2.808 3.192 14 O -0.991 6.991 15 O -1.002 7.002 16 N -0.854 5.854 17 C 0.001 3.999 18 H 0.124 0.876 19 C -0.189 4.189 20 C -0.120 4.120 21 H 0.115 0.885 22 C 0.008 3.992 23 O -0.401 6.401 24 C -0.164 4.164 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.255 0.745 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.244 0.756 39 H 0.105 0.895 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.890 -6.060 8.799 13.282 hybrid contribution 1.237 -0.057 -0.940 1.555 sum 9.127 -6.116 7.859 13.509 Atomic orbital electron populations 1.22203 0.96150 1.03196 1.01234 1.21245 0.94456 0.81245 1.03365 1.57592 1.79275 1.24027 1.22648 1.18792 0.96969 0.90744 0.80215 1.21892 1.02388 1.27378 1.05766 0.89698 1.25812 1.00691 0.94680 0.97563 1.70081 1.38188 1.31261 1.17492 0.85677 0.80438 0.77221 0.79199 1.20562 1.22029 1.16384 1.01135 0.73098 0.72754 0.72201 1.93525 1.71263 1.76141 1.58204 1.93534 1.86690 1.33820 1.86149 1.55393 1.23875 1.68032 1.38116 1.21965 0.88920 0.95916 0.93111 0.87648 1.23512 0.97474 0.97085 1.00818 1.22508 0.93437 0.96901 0.99148 0.88546 1.22219 0.93122 0.97784 0.86123 1.86447 1.29957 1.86497 1.37243 1.23235 0.95174 0.99675 0.98281 0.89070 0.93603 0.93429 0.89876 0.89607 0.96294 0.96629 0.92798 0.74507 0.89079 0.91939 0.91943 0.92983 0.75583 0.89452 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.40 16 2 C 0.12 4.00 6.06 86.38 0.52 4.52 16 3 N -0.99 -39.84 2.82 -519.86 -1.47 -41.31 16 4 C 0.26 12.54 5.36 85.63 0.46 13.00 16 5 C -0.54 -25.96 7.02 25.60 0.18 -25.78 16 6 H 0.09 3.76 6.96 -2.91 -0.02 3.74 16 7 C 0.01 0.61 5.46 84.66 0.46 1.07 16 8 N -0.93 -52.41 13.29 21.45 0.28 -52.13 16 9 Si 0.95 39.03 29.54 68.60 2.03 41.06 16 10 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.24 -8.68 7.11 99.48 0.71 -7.97 16 13 S 2.80 110.45 6.04 -56.49 -0.34 110.11 16 14 O -1.01 -40.12 17.11 -128.00 -2.19 -42.31 16 15 O -1.02 -48.92 16.46 -128.00 -2.11 -51.03 16 16 N -1.09 -34.78 5.78 -167.21 -0.97 -35.75 16 17 C 0.11 3.58 3.76 45.52 0.17 3.75 16 18 H 0.11 4.28 5.24 -2.39 -0.01 4.27 16 19 C -0.15 -4.40 7.43 31.12 0.23 -4.17 16 20 C -0.10 -2.43 3.83 -10.27 -0.04 -2.47 16 21 H 0.10 2.24 8.11 -2.38 -0.02 2.22 16 22 C 0.08 1.69 6.89 71.98 0.50 2.19 16 23 O -0.59 -12.12 13.66 -148.98 -2.03 -14.16 16 24 C -0.12 -3.23 7.38 31.12 0.23 -3.00 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.66 8.11 -2.39 -0.02 2.65 16 29 H 0.09 2.41 7.61 -2.39 -0.02 2.39 16 30 H 0.02 0.99 8.11 -2.39 -0.02 0.97 16 31 H 0.02 0.87 6.91 -2.39 -0.02 0.86 16 32 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.42 10.67 8.78 -96.74 -0.85 9.83 16 34 H 0.09 2.60 7.90 -2.39 -0.02 2.58 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 1.00 7.85 -2.38 -0.02 0.98 16 38 H 0.39 4.19 9.12 -74.06 -0.68 3.52 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.45 8.10 -2.39 -0.02 2.43 16 Total: -1.00 -67.55 339.40 -3.82 -71.37 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.47 Total: 29.42 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 3.45 Total: -15.29 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -2.15 Total: -129.18 kcal Atomic # 8 Polarization: -101.16 SS G_CDS: -6.33 Total: -107.50 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 16 Polarization: 110.45 SS G_CDS: -0.34 Total: 110.11 kcal Total: -67.55 -3.82 -71.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922062698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.010 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds