Wall clock time and date at job start Tue Mar 31 2020 03:04:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 S 1.65591 * 119.99772 * 2 1
4 4 O 1.42102 * 104.28004 * 308.92417 * 3 2 1
5 5 O 1.42108 * 104.27836 * 181.07371 * 3 2 1
6 6 C 1.81396 * 104.45335 * 64.99911 * 3 2 1
7 7 C 1.52994 * 109.47271 * 187.36698 * 6 3 2
8 8 H 1.09002 * 109.91068 * 178.74105 * 7 6 3
9 9 C 1.53989 * 109.92020 * 299.84042 * 7 6 3
10 10 C 1.54599 * 105.13954 * 120.77636 * 9 7 6
11 11 C 1.54930 * 102.92182 * 21.96011 * 10 9 7
12 12 N 1.47900 * 110.08533 * 57.53293 * 7 6 3
13 13 C 1.46899 * 110.99967 * 94.70728 * 12 7 6
14 14 C 1.53004 * 109.47157 * 176.87723 * 13 12 7
15 15 H 1.08998 * 109.47276 * 59.99690 * 14 13 12
16 16 O 1.42904 * 109.47154 * 300.00292 * 14 13 12
17 17 C 1.50693 * 109.47583 * 180.02562 * 14 13 12
18 18 H 1.08007 * 119.99835 * 359.97438 * 17 14 13
19 19 C 1.37878 * 120.00259 * 180.02562 * 17 14 13
20 20 N 1.31511 * 120.00027 * 359.97438 * 19 17 14
21 21 Si 1.86801 * 119.99827 * 179.97438 * 19 17 14
22 22 H 1.48506 * 109.46853 * 89.99995 * 21 19 17
23 23 H 1.48502 * 109.47316 * 209.99582 * 21 19 17
24 24 H 1.48498 * 109.47223 * 330.00072 * 21 19 17
25 25 H 1.08997 * 109.47348 * 60.00721 * 1 2 3
26 26 H 1.09006 * 109.47111 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47137 * 299.99729 * 1 2 3
28 28 H 0.97004 * 119.99834 * 179.97438 * 2 1 3
29 29 H 1.08999 * 109.46931 * 67.36780 * 6 3 2
30 30 H 1.08999 * 109.47246 * 307.36654 * 6 3 2
31 31 H 1.09003 * 110.31617 * 239.69298 * 9 7 6
32 32 H 1.09002 * 110.30896 * 1.86581 * 9 7 6
33 33 H 1.08998 * 110.72596 * 140.31909 * 10 9 7
34 34 H 1.09007 * 110.72289 * 263.42086 * 10 9 7
35 35 H 1.08997 * 110.66979 * 81.01863 * 11 10 9
36 36 H 1.09003 * 110.66926 * 204.15670 * 11 10 9
37 37 H 1.09002 * 109.47542 * 296.87442 * 13 12 7
38 38 H 1.09000 * 109.47438 * 56.87941 * 13 12 7
39 39 H 0.96706 * 113.99240 * 300.00208 * 16 14 13
40 40 H 0.97002 * 119.99932 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 16 2.2929 1.4341 0.0000
4 8 1.7188 2.1702 -1.0714
5 8 3.6606 1.0492 -0.0258
6 6 1.8763 2.1974 1.5920
7 6 2.4373 3.6200 1.6378
8 1 2.1718 4.0934 2.5831
9 6 3.9687 3.5854 1.4805
10 6 4.2643 4.4295 0.2195
11 6 3.0034 5.3213 0.0962
12 7 1.9031 4.4132 0.5096
13 6 0.7161 5.1762 0.9180
14 6 0.2394 6.0418 -0.2502
15 1 -0.0128 5.4029 -1.0965
16 8 1.2795 6.9455 -0.6290
17 6 -0.9780 6.8250 0.1688
18 1 -1.3725 6.7160 1.1683
19 6 -1.5887 7.6799 -0.7240
20 7 -1.1086 7.8122 -1.9411
21 14 -3.0981 8.6502 -0.2046
22 1 -2.6756 9.9523 0.3710
23 1 -3.9639 8.8894 -1.3872
24 1 -3.8547 7.8803 0.8152
25 1 -0.3634 0.5137 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.9500 -0.8401 0.0004
29 1 2.3098 1.6096 2.4011
30 1 0.7929 2.2302 1.7068
31 1 4.4489 4.0282 2.3532
32 1 4.3114 2.5605 1.3385
33 1 5.1557 5.0399 0.3640
34 1 4.3746 3.7895 -0.6560
35 1 3.0696 6.1764 0.7688
36 1 2.8641 5.6504 -0.9336
37 1 -0.0774 4.4869 1.2068
38 1 0.9682 5.8152 1.7643
39 1 1.5553 7.5459 0.0772
40 1 -1.5381 8.4140 -2.5692
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930019206.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:04:49
Heat of formation + Delta-G solvation = -109.239858 kcal
Electronic energy + Delta-G solvation = -23317.340879 eV
Core-core repulsion = 19873.632868 eV
Total energy + Delta-G solvation = -3443.708011 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.07673 -36.80057 -35.68266 -35.51850 -34.92734 -32.16743 -31.57836 -31.36041
-27.78953 -25.99852 -25.76429 -24.30339 -21.21100 -20.37103 -20.21558 -19.11597
-17.71783 -17.04880 -16.45153 -15.78244 -15.42422 -14.91655 -14.80255 -14.57498
-14.19107 -14.03569 -13.91318 -13.55027 -13.07500 -12.87101 -12.73604 -12.49238
-11.92837 -11.73073 -11.66714 -11.61618 -11.39058 -11.28014 -11.11535 -10.93619
-10.83030 -10.73421 -10.45327 -10.41833 -10.18815 -9.92458 -9.54061 -8.95135
-8.54749 -8.04552 -7.84320 -5.97144 -4.15878 0.50782 2.98228 3.28225
3.35563 3.37525 3.97807 4.20254 4.40298 4.47284 4.70800 4.75496
4.95312 5.11945 5.21099 5.24991 5.29324 5.33968 5.54455 5.63508
5.70411 5.75347 5.86516 5.94405 6.05175 6.08745 6.17175 6.30710
6.40315 6.51276 6.77414 6.89916 6.98523 7.42883 7.48204 7.79365
7.99905 8.22735 8.87198 9.40879 9.60873 11.06864
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.021022 B = 0.005118 C = 0.004535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.626669 B = 5469.911677 C = 6172.817861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -1.135 6.135
3 S 2.618 3.382
4 O -0.912 6.912
5 O -0.971 6.971
6 C -0.611 4.611
7 C 0.072 3.928
8 H 0.069 0.931
9 C -0.161 4.161
10 C -0.140 4.140
11 C 0.051 3.949
12 N -0.511 5.511
13 C 0.027 3.973
14 C 0.233 3.767
15 H 0.070 0.930
16 O -0.559 6.559
17 C -0.573 4.573
18 H 0.053 0.947
19 C 0.081 3.919
20 N -0.855 5.855
21 Si 0.888 3.112
22 H -0.280 1.280
23 H -0.285 1.285
24 H -0.275 1.275
25 H 0.072 0.928
26 H 0.077 0.923
27 H 0.057 0.943
28 H 0.411 0.589
29 H 0.124 0.876
30 H 0.129 0.871
31 H 0.076 0.924
32 H 0.087 0.913
33 H 0.073 0.927
34 H 0.073 0.927
35 H 0.043 0.957
36 H 0.113 0.887
37 H 0.067 0.933
38 H 0.025 0.975
39 H 0.338 0.662
40 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.659 -13.934 8.376 17.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.892 5.892
3 S 2.708 3.292
4 O -0.901 6.901
5 O -0.961 6.961
6 C -0.741 4.741
7 C -0.039 4.039
8 H 0.087 0.913
9 C -0.199 4.199
10 C -0.178 4.178
11 C -0.076 4.076
12 N -0.235 5.235
13 C -0.101 4.101
14 C 0.176 3.824
15 H 0.087 0.913
16 O -0.361 6.361
17 C -0.612 4.612
18 H 0.071 0.929
19 C -0.126 4.126
20 N -0.490 5.490
21 Si 0.716 3.284
22 H -0.207 1.207
23 H -0.211 1.211
24 H -0.199 1.199
25 H 0.091 0.909
26 H 0.096 0.904
27 H 0.075 0.925
28 H 0.244 0.756
29 H 0.143 0.857
30 H 0.147 0.853
31 H 0.095 0.905
32 H 0.105 0.895
33 H 0.092 0.908
34 H 0.091 0.909
35 H 0.061 0.939
36 H 0.131 0.869
37 H 0.085 0.915
38 H 0.043 0.957
39 H 0.182 0.818
40 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 6.801 -14.022 6.492 16.882
hybrid contribution -1.020 0.884 2.435 2.784
sum 5.781 -13.138 8.927 16.903
Atomic orbital electron populations
1.21478 0.78969 1.03663 1.02355 1.55707 1.15968 1.24996 1.92549
1.05010 0.73733 0.73080 0.77412 1.93668 1.77707 1.70546 1.48199
1.93543 1.33118 1.81937 1.87512 1.30497 1.11517 1.07988 1.24111
1.22038 0.93912 0.91224 0.96744 0.91342 1.22932 0.94318 1.02794
0.99896 1.22749 0.99062 0.98740 0.97297 1.23382 0.87448 0.92833
1.03898 1.64831 1.05765 1.23856 1.29089 1.23190 0.91012 0.96195
0.99710 1.19397 0.84700 0.86654 0.91673 0.91277 1.86651 1.56695
1.50960 1.41800 1.21595 1.13544 1.27094 0.98958 0.92857 1.25018
0.96536 0.96365 0.94672 1.70087 1.39010 1.35420 1.04518 0.86691
0.83134 0.80414 0.78180 1.20656 1.21104 1.19945 0.90917 0.90423
0.92462 0.75627 0.85727 0.85295 0.90495 0.89478 0.90813 0.90852
0.93882 0.86891 0.91497 0.95713 0.81813 0.92987
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.75 11.03 59.85 0.66 1.41 16
2 N -1.13 -11.94 6.08 -16.63 -0.10 -12.04 16
3 S 2.62 37.64 4.87 -107.50 -0.52 37.11 16
4 O -0.91 -17.49 16.51 -57.54 -0.95 -18.44 16
5 O -0.97 -15.46 16.02 -57.54 -0.92 -16.38 16
6 C -0.61 -7.48 5.87 37.15 0.22 -7.26 16
7 C 0.07 1.05 2.77 -66.65 -0.18 0.87 16
8 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16
9 C -0.16 -2.20 6.05 -25.38 -0.15 -2.35 16
10 C -0.14 -2.12 7.06 -24.87 -0.18 -2.30 16
11 C 0.05 0.92 4.76 -1.90 -0.01 0.91 16
12 N -0.51 -9.45 3.50 -222.58 -0.78 -10.23 16
13 C 0.03 0.55 4.61 -3.82 -0.02 0.53 16
14 C 0.23 5.93 3.01 -27.88 -0.08 5.85 16
15 H 0.07 2.02 8.14 -51.93 -0.42 1.60 16
16 O -0.56 -13.96 9.24 -35.23 -0.33 -14.28 16
17 C -0.57 -15.65 8.76 -34.44 -0.30 -15.95 16
18 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16
19 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16
20 N -0.85 -25.43 12.84 55.43 0.71 -24.72 16
21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16
22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
25 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16
26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
27 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16
28 H 0.41 3.41 8.92 -34.47 -0.31 3.10 16
29 H 0.12 1.11 8.14 -51.92 -0.42 0.69 16
30 H 0.13 1.45 7.48 -51.92 -0.39 1.06 16
31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16
32 H 0.09 1.17 5.45 -51.93 -0.28 0.88 16
33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16
35 H 0.04 0.73 7.34 -51.93 -0.38 0.35 16
36 H 0.11 2.34 6.65 -51.93 -0.35 2.00 16
37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
38 H 0.02 0.49 7.99 -51.93 -0.41 0.07 16
39 H 0.34 7.56 8.49 45.56 0.39 7.94 16
40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 327.81 15.07 4.94 4.94
Total: -1.00 -34.69 327.81 -8.55 -43.24
By element:
Atomic # 1 Polarization: 16.28 SS G_CDS: -5.44 Total: 10.84 kcal
Atomic # 6 Polarization: -15.99 SS G_CDS: -0.14 Total: -16.13 kcal
Atomic # 7 Polarization: -46.83 SS G_CDS: -0.17 Total: -47.00 kcal
Atomic # 8 Polarization: -46.90 SS G_CDS: -2.20 Total: -49.10 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Atomic # 16 Polarization: 37.64 SS G_CDS: -0.52 Total: 37.11 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -34.69 -8.55 -43.24 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930019206.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.999 kcal
(2) G-P(sol) polarization free energy of solvation -34.689 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.687 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds