Wall clock time and date at job start Tue Mar 31 2020 03:04:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 S 1.65591 * 119.99772 * 2 1
4 4 O 1.42102 * 104.28004 * 308.92417 * 3 2 1
5 5 O 1.42108 * 104.27836 * 181.07371 * 3 2 1
6 6 C 1.81396 * 104.45335 * 64.99911 * 3 2 1
7 7 C 1.52994 * 109.47271 * 187.36698 * 6 3 2
8 8 H 1.09002 * 109.91068 * 178.74105 * 7 6 3
9 9 C 1.53989 * 109.92020 * 299.84042 * 7 6 3
10 10 C 1.54599 * 105.13954 * 120.77636 * 9 7 6
11 11 C 1.54930 * 102.92182 * 21.96011 * 10 9 7
12 12 N 1.47900 * 110.08533 * 57.53293 * 7 6 3
13 13 C 1.46899 * 110.99967 * 94.70728 * 12 7 6
14 14 C 1.53004 * 109.47157 * 176.87723 * 13 12 7
15 15 H 1.08998 * 109.47276 * 59.99690 * 14 13 12
16 16 O 1.42904 * 109.47154 * 300.00292 * 14 13 12
17 17 C 1.50693 * 109.47583 * 180.02562 * 14 13 12
18 18 H 1.08007 * 119.99835 * 359.97438 * 17 14 13
19 19 C 1.37878 * 120.00259 * 180.02562 * 17 14 13
20 20 N 1.31511 * 120.00027 * 359.97438 * 19 17 14
21 21 Si 1.86801 * 119.99827 * 179.97438 * 19 17 14
22 22 H 1.48506 * 109.46853 * 89.99995 * 21 19 17
23 23 H 1.48502 * 109.47316 * 209.99582 * 21 19 17
24 24 H 1.48498 * 109.47223 * 330.00072 * 21 19 17
25 25 H 1.08997 * 109.47348 * 60.00721 * 1 2 3
26 26 H 1.09006 * 109.47111 * 179.97438 * 1 2 3
27 27 H 1.08996 * 109.47137 * 299.99729 * 1 2 3
28 28 H 0.97004 * 119.99834 * 179.97438 * 2 1 3
29 29 H 1.08999 * 109.46931 * 67.36780 * 6 3 2
30 30 H 1.08999 * 109.47246 * 307.36654 * 6 3 2
31 31 H 1.09003 * 110.31617 * 239.69298 * 9 7 6
32 32 H 1.09002 * 110.30896 * 1.86581 * 9 7 6
33 33 H 1.08998 * 110.72596 * 140.31909 * 10 9 7
34 34 H 1.09007 * 110.72289 * 263.42086 * 10 9 7
35 35 H 1.08997 * 110.66979 * 81.01863 * 11 10 9
36 36 H 1.09003 * 110.66926 * 204.15670 * 11 10 9
37 37 H 1.09002 * 109.47542 * 296.87442 * 13 12 7
38 38 H 1.09000 * 109.47438 * 56.87941 * 13 12 7
39 39 H 0.96706 * 113.99240 * 300.00208 * 16 14 13
40 40 H 0.97002 * 119.99932 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 16 2.2929 1.4341 0.0000
4 8 1.7188 2.1702 -1.0714
5 8 3.6606 1.0492 -0.0258
6 6 1.8763 2.1974 1.5920
7 6 2.4373 3.6200 1.6378
8 1 2.1718 4.0934 2.5831
9 6 3.9687 3.5854 1.4805
10 6 4.2643 4.4295 0.2195
11 6 3.0034 5.3213 0.0962
12 7 1.9031 4.4132 0.5096
13 6 0.7161 5.1762 0.9180
14 6 0.2394 6.0418 -0.2502
15 1 -0.0128 5.4029 -1.0965
16 8 1.2795 6.9455 -0.6290
17 6 -0.9780 6.8250 0.1688
18 1 -1.3725 6.7160 1.1683
19 6 -1.5887 7.6799 -0.7240
20 7 -1.1086 7.8122 -1.9411
21 14 -3.0981 8.6502 -0.2046
22 1 -2.6756 9.9523 0.3710
23 1 -3.9639 8.8894 -1.3872
24 1 -3.8547 7.8803 0.8152
25 1 -0.3634 0.5137 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.9500 -0.8401 0.0004
29 1 2.3098 1.6096 2.4011
30 1 0.7929 2.2302 1.7068
31 1 4.4489 4.0282 2.3532
32 1 4.3114 2.5605 1.3385
33 1 5.1557 5.0399 0.3640
34 1 4.3746 3.7895 -0.6560
35 1 3.0696 6.1764 0.7688
36 1 2.8641 5.6504 -0.9336
37 1 -0.0774 4.4869 1.2068
38 1 0.9682 5.8152 1.7643
39 1 1.5553 7.5459 0.0772
40 1 -1.5381 8.4140 -2.5692
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000930019206.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:04:48
Heat of formation + Delta-G solvation = -139.349717 kcal
Electronic energy + Delta-G solvation = -23318.646540 eV
Core-core repulsion = 19873.632868 eV
Total energy + Delta-G solvation = -3445.013672 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.43309 -38.00649 -37.50176 -36.77415 -35.80425 -34.26788 -33.10299 -32.54164
-29.63194 -26.99564 -26.77388 -26.13081 -22.86380 -21.80967 -21.53376 -20.17603
-19.07029 -18.73103 -17.55911 -16.99623 -16.74618 -16.61191 -16.32872 -16.08332
-15.84667 -15.45171 -14.93544 -14.73617 -14.58652 -14.11888 -13.97480 -13.59544
-13.40788 -13.30810 -12.96187 -12.92038 -12.84029 -12.78860 -12.71810 -12.39438
-12.36829 -12.16501 -12.00253 -11.77993 -11.61717 -11.27047 -10.97142 -10.69307
-10.40467 -9.95247 -9.26756 -8.10222 -6.36909 -0.57213 1.41287 1.42332
1.53112 1.99337 2.39737 2.91380 3.00902 3.15497 3.42027 3.55680
3.61383 3.94820 4.10763 4.22746 4.26355 4.29027 4.40326 4.47733
4.50182 4.62929 4.65392 4.76524 4.88759 4.93389 4.96976 5.01503
5.07373 5.10627 5.23666 5.38073 5.65204 5.77102 6.00699 6.07694
6.18247 6.24443 6.76741 7.36012 7.58323 8.94390
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.021022 B = 0.005118 C = 0.004535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1331.626669 B = 5469.911677 C = 6172.817861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -1.124 6.124
3 S 2.615 3.385
4 O -0.975 6.975
5 O -0.993 6.993
6 C -0.599 4.599
7 C 0.064 3.936
8 H 0.089 0.911
9 C -0.157 4.157
10 C -0.139 4.139
11 C 0.051 3.949
12 N -0.531 5.531
13 C 0.043 3.957
14 C 0.234 3.766
15 H 0.015 0.985
16 O -0.569 6.569
17 C -0.584 4.584
18 H 0.063 0.937
19 C 0.023 3.977
20 N -0.901 5.901
21 Si 0.962 3.038
22 H -0.272 1.272
23 H -0.287 1.287
24 H -0.262 1.262
25 H 0.047 0.953
26 H 0.111 0.889
27 H 0.075 0.925
28 H 0.423 0.577
29 H 0.170 0.830
30 H 0.143 0.857
31 H 0.108 0.892
32 H 0.091 0.909
33 H 0.099 0.901
34 H 0.052 0.948
35 H 0.053 0.947
36 H 0.070 0.930
37 H 0.073 0.927
38 H 0.039 0.961
39 H 0.349 0.651
40 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.491 -14.754 11.741 19.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 N -0.885 5.885
3 S 2.709 3.291
4 O -0.964 6.964
5 O -0.983 6.983
6 C -0.731 4.731
7 C -0.046 4.046
8 H 0.107 0.893
9 C -0.195 4.195
10 C -0.177 4.177
11 C -0.077 4.077
12 N -0.256 5.256
13 C -0.085 4.085
14 C 0.176 3.824
15 H 0.033 0.967
16 O -0.373 6.373
17 C -0.622 4.622
18 H 0.081 0.919
19 C -0.179 4.179
20 N -0.538 5.538
21 Si 0.787 3.213
22 H -0.198 1.198
23 H -0.212 1.212
24 H -0.186 1.186
25 H 0.066 0.934
26 H 0.129 0.871
27 H 0.093 0.907
28 H 0.258 0.742
29 H 0.188 0.812
30 H 0.161 0.839
31 H 0.127 0.873
32 H 0.109 0.891
33 H 0.118 0.882
34 H 0.071 0.929
35 H 0.071 0.929
36 H 0.089 0.911
37 H 0.091 0.909
38 H 0.057 0.943
39 H 0.194 0.806
40 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 6.652 -14.876 9.850 19.042
hybrid contribution -0.936 1.079 1.384 1.988
sum 5.717 -13.798 11.234 18.689
Atomic orbital electron populations
1.21715 0.77903 1.05828 1.02086 1.55300 1.16544 1.24243 1.92394
1.04690 0.73202 0.73362 0.77886 1.93613 1.78574 1.72374 1.51846
1.93503 1.34445 1.82277 1.88120 1.30405 1.12799 1.06777 1.23161
1.22224 0.94704 0.91775 0.95945 0.89285 1.22985 0.93667 1.02918
0.99944 1.22721 0.98636 0.98601 0.97758 1.23212 0.88892 0.93861
1.01692 1.64723 1.05489 1.23904 1.31475 1.22797 0.92289 0.95895
0.97484 1.19141 0.84960 0.86714 0.91548 0.96723 1.86621 1.56482
1.51504 1.42706 1.22014 1.14101 1.26842 0.99261 0.91863 1.25943
0.99804 0.97607 0.94526 1.70254 1.40961 1.36607 1.05958 0.85525
0.79014 0.78959 0.77817 1.19791 1.21234 1.18637 0.93412 0.87065
0.90666 0.74190 0.81244 0.83892 0.87347 0.89061 0.88230 0.92870
0.92923 0.91118 0.90899 0.94335 0.80580 0.93124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.19 11.03 127.77 1.41 2.60 16
2 N -1.12 -22.04 6.08 -206.54 -1.25 -23.30 16
3 S 2.62 73.47 4.87 -56.49 -0.27 73.19 16
4 O -0.97 -39.10 16.51 -127.65 -2.11 -41.20 16
5 O -0.99 -30.90 16.02 -127.65 -2.04 -32.95 16
6 C -0.60 -12.71 5.87 71.98 0.42 -12.29 16
7 C 0.06 1.69 2.77 45.06 0.12 1.81 16
8 H 0.09 2.07 7.68 -2.39 -0.02 2.06 16
9 C -0.16 -3.81 6.05 31.47 0.19 -3.62 16
10 C -0.14 -4.10 7.06 31.80 0.22 -3.87 16
11 C 0.05 1.84 4.76 86.65 0.41 2.25 16
12 N -0.53 -19.50 3.50 -858.12 -3.01 -22.50 16
13 C 0.04 1.77 4.61 86.30 0.40 2.16 16
14 C 0.23 12.31 3.01 29.85 0.09 12.40 16
15 H 0.01 0.93 8.14 -2.39 -0.02 0.91 16
16 O -0.57 -29.62 9.24 -148.98 -1.38 -31.00 16
17 C -0.58 -32.12 8.76 25.60 0.22 -31.89 16
18 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16
19 C 0.02 1.33 5.40 84.66 0.46 1.78 16
20 N -0.90 -55.30 12.84 21.45 0.28 -55.03 16
21 Si 0.96 43.46 29.54 68.60 2.03 45.48 16
22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
23 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16
24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16
25 H 0.05 1.04 8.04 -2.39 -0.02 1.02 16
26 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16
27 H 0.07 0.99 7.47 -2.39 -0.02 0.97 16
28 H 0.42 6.25 8.92 -96.74 -0.86 5.39 16
29 H 0.17 2.12 8.14 -2.39 -0.02 2.10 16
30 H 0.14 2.71 7.48 -2.39 -0.02 2.69 16
31 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16
32 H 0.09 2.18 5.45 -2.39 -0.01 2.17 16
33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16
34 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16
35 H 0.05 1.76 7.34 -2.39 -0.02 1.75 16
36 H 0.07 3.14 6.65 -2.39 -0.02 3.12 16
37 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16
38 H 0.04 1.45 7.99 -2.39 -0.02 1.43 16
39 H 0.35 15.97 8.49 -74.05 -0.63 15.34 16
40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16
Total: -1.00 -79.12 327.81 -4.25 -83.37
By element:
Atomic # 1 Polarization: 33.02 SS G_CDS: -0.44 Total: 32.58 kcal
Atomic # 6 Polarization: -32.62 SS G_CDS: 3.95 Total: -28.66 kcal
Atomic # 7 Polarization: -96.84 SS G_CDS: -3.99 Total: -100.83 kcal
Atomic # 8 Polarization: -99.62 SS G_CDS: -5.53 Total: -105.15 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal
Atomic # 16 Polarization: 73.47 SS G_CDS: -0.27 Total: 73.19 kcal
Total: -79.12 -4.25 -83.37 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930019206.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.977 kcal
(2) G-P(sol) polarization free energy of solvation -79.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.249 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds