Wall clock time and date at job start Tue Mar 31 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47072 * 2 1 4 4 S 1.65601 * 120.00018 * 165.00203 * 3 2 1 5 5 O 1.42105 * 104.27886 * 308.92747 * 4 3 2 6 6 O 1.42100 * 104.28089 * 181.07274 * 4 3 2 7 7 C 1.81394 * 104.45114 * 65.00073 * 4 3 2 8 8 H 1.08995 * 110.62950 * 61.89637 * 7 4 3 9 9 C 1.55140 * 110.70815 * 298.59907 * 7 4 3 10 10 C 1.54907 * 101.65799 * 205.96406 * 9 7 4 11 11 N 1.47845 * 104.79145 * 37.06783 * 10 9 7 12 12 C 1.46906 * 110.99647 * 213.63735 * 11 10 9 13 13 C 1.53002 * 109.47053 * 290.84326 * 12 11 10 14 14 H 1.09004 * 109.47006 * 60.00213 * 13 12 11 15 15 O 1.42896 * 109.47217 * 300.00068 * 13 12 11 16 16 C 1.50696 * 109.46999 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00355 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00777 * 180.02562 * 18 16 13 20 20 Si 1.86811 * 119.99592 * 0.02562 * 18 16 13 21 21 H 1.48506 * 109.46642 * 90.00053 * 20 18 16 22 22 H 1.48502 * 109.47012 * 209.99745 * 20 18 16 23 23 H 1.48495 * 109.47152 * 329.99991 * 20 18 16 24 24 C 1.47441 * 108.57385 * 335.90448 * 11 10 9 25 25 H 1.09008 * 109.47002 * 299.99658 * 1 2 3 26 26 H 1.08997 * 109.47514 * 59.99999 * 1 2 3 27 27 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47430 * 240.00036 * 2 1 3 29 29 H 1.08997 * 109.47514 * 120.00001 * 2 1 3 30 30 H 0.97003 * 120.00331 * 345.00109 * 3 2 1 31 31 H 1.09000 * 110.98645 * 324.05687 * 9 7 4 32 32 H 1.08998 * 110.99335 * 87.82932 * 9 7 4 33 33 H 1.09000 * 110.36912 * 278.24381 * 10 9 7 34 34 H 1.08996 * 110.37416 * 155.89519 * 10 9 7 35 35 H 1.08992 * 109.47459 * 50.84409 * 12 11 10 36 36 H 1.09004 * 109.47040 * 170.84560 * 12 11 10 37 37 H 0.96699 * 114.00604 * 300.00154 * 15 13 12 38 38 H 0.96999 * 120.00276 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.88870 * 120.39556 * 24 11 10 40 40 H 1.08997 * 109.89260 * 241.58618 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7001 0.3711 5 8 3.8180 1.0142 1.5965 6 8 3.6994 3.1157 0.2964 7 6 4.5449 0.9243 -0.9691 8 1 4.2922 1.3759 -1.9284 9 6 4.2996 -0.6073 -0.9980 10 6 5.6034 -1.1207 -1.6585 11 7 6.6682 -0.2471 -1.1211 12 6 7.7208 -0.0240 -2.1213 13 6 8.4920 -1.3256 -2.3491 14 1 7.8081 -2.0953 -2.7069 15 8 9.0850 -1.7493 -1.1200 16 6 9.5713 -1.0969 -3.3756 17 1 9.6952 -0.1207 -3.8206 18 6 10.4008 -2.1338 -3.7466 19 7 11.3431 -1.9341 -4.6421 20 14 10.1862 -3.8226 -2.9774 21 1 9.2353 -4.6205 -3.7926 22 1 11.4990 -4.5150 -2.9292 23 1 9.6536 -3.6746 -1.5991 24 6 6.0609 1.0286 -0.6996 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.4149 2.1090 -0.2174 31 1 4.1907 -1.0043 0.0113 32 1 3.4298 -0.8520 -1.6075 33 1 5.5434 -1.0230 -2.7425 34 1 5.7869 -2.1583 -1.3796 35 1 7.2685 0.2992 -3.0588 36 1 8.4047 0.7457 -1.7635 37 1 9.7065 -1.1118 -0.7427 38 1 11.9264 -2.6638 -4.9033 39 1 6.2382 1.1902 0.3637 40 1 6.4847 1.8499 -1.2774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930178397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:34 Heat of formation + Delta-G solvation = -110.877348 kcal Electronic energy + Delta-G solvation = -22388.944757 eV Core-core repulsion = 18945.165739 eV Total energy + Delta-G solvation = -3443.779017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.04533 -37.33222 -36.34465 -36.08292 -35.88722 -32.24854 -32.04030 -30.09949 -29.22724 -28.21382 -24.82650 -23.38836 -21.81561 -21.60437 -20.12007 -19.55374 -17.90572 -17.41338 -17.10482 -16.63405 -15.78074 -15.11289 -14.99150 -14.79513 -14.64795 -14.46221 -13.95958 -13.53155 -13.40506 -13.17752 -12.81947 -12.55567 -12.34746 -12.30863 -12.18020 -12.04239 -11.98180 -11.84905 -11.70986 -11.45105 -11.21160 -10.93399 -10.81532 -10.68618 -10.36038 -9.94131 -9.73815 -9.05506 -8.64090 -8.28739 -7.96346 -6.15203 -4.27116 0.04422 2.46462 3.37588 3.47862 3.50691 3.75840 3.83148 4.00445 4.25674 4.49216 4.52585 4.53510 4.63559 4.75244 4.89501 5.08427 5.17635 5.20261 5.26199 5.38388 5.46698 5.53596 5.56121 5.63008 5.74967 5.81166 5.88588 5.90910 6.09874 6.22373 6.53118 6.62000 7.08668 7.24369 7.38685 7.63039 8.26837 8.80926 9.10059 9.49664 10.95353 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031290 B = 0.003711 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.650456 B = 7543.713553 C = 7926.298037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -1.120 6.120 4 S 2.621 3.379 5 O -0.948 6.948 6 O -0.961 6.961 7 C -0.615 4.615 8 H 0.140 0.860 9 C -0.111 4.111 10 C 0.051 3.949 11 N -0.511 5.511 12 C 0.031 3.969 13 C 0.204 3.796 14 H 0.052 0.948 15 O -0.570 6.570 16 C -0.568 4.568 17 H 0.071 0.929 18 C 0.084 3.916 19 N -0.894 5.894 20 Si 0.871 3.129 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.214 1.214 24 C 0.068 3.932 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.416 0.584 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.355 0.645 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.719 4.454 7.676 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.880 5.880 4 S 2.713 3.287 5 O -0.937 6.937 6 O -0.951 6.951 7 C -0.726 4.726 8 H 0.158 0.842 9 C -0.150 4.150 10 C -0.077 4.077 11 N -0.236 5.236 12 C -0.096 4.096 13 C 0.146 3.854 14 H 0.069 0.931 15 O -0.375 6.375 16 C -0.606 4.606 17 H 0.089 0.911 18 C -0.121 4.121 19 N -0.531 5.531 20 Si 0.697 3.303 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.137 1.137 24 C -0.062 4.062 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.250 0.750 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.201 0.799 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.289 3.948 8.706 23.336 hybrid contribution -0.223 0.159 -1.460 1.485 sum -21.512 4.107 7.246 23.068 Atomic orbital electron populations 1.21963 0.94182 1.03030 1.02682 1.21513 0.96492 0.81739 1.02560 1.55634 1.28998 1.14590 1.88802 1.04793 0.73631 0.74170 0.76152 1.93606 1.84537 1.76140 1.39450 1.93599 1.85454 1.28518 1.87531 1.31861 1.11044 1.09449 1.20240 0.84235 1.22803 0.99845 0.88998 1.03328 1.23027 0.88199 0.98907 0.97598 1.63647 1.10339 1.09885 1.39688 1.23149 0.93075 1.01610 0.91806 1.19665 0.92070 0.90336 0.83376 0.93051 1.86658 1.62410 1.47636 1.40812 1.21510 1.16265 0.98962 1.23827 0.91129 1.24987 0.93882 0.99748 0.93446 1.69956 1.18947 1.33149 1.30998 0.87024 0.77312 0.82423 0.83508 1.21522 1.22233 1.13664 1.22565 0.87024 0.94760 1.01851 0.91835 0.91998 0.90919 0.91197 0.90000 0.75013 0.88964 0.89288 0.92956 0.89256 0.94553 0.90946 0.79909 0.92550 0.90385 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 10.05 37.16 0.37 -0.38 16 2 C 0.10 0.65 5.86 -4.05 -0.02 0.62 16 3 N -1.12 -8.42 5.89 -10.62 -0.06 -8.48 16 4 S 2.62 28.57 4.94 -107.50 -0.53 28.04 16 5 O -0.95 -13.36 17.08 -57.54 -0.98 -14.34 16 6 O -0.96 -13.29 18.08 -57.54 -1.04 -14.33 16 7 C -0.62 -6.49 3.67 -24.90 -0.09 -6.58 16 8 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 9 C -0.11 -1.14 4.94 -24.59 -0.12 -1.26 16 10 C 0.05 0.72 5.78 -2.30 -0.01 0.71 16 11 N -0.51 -8.41 5.03 -231.25 -1.16 -9.58 16 12 C 0.03 0.59 4.17 -3.82 -0.02 0.58 16 13 C 0.20 4.64 2.30 -27.88 -0.06 4.58 16 14 H 0.05 1.20 6.92 -51.93 -0.36 0.84 16 15 O -0.57 -12.94 10.01 -35.23 -0.35 -13.29 16 16 C -0.57 -15.51 9.34 -34.44 -0.32 -15.83 16 17 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 18 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 19 N -0.89 -27.10 13.96 55.43 0.77 -26.32 16 20 Si 0.87 21.65 26.99 -169.99 -4.59 17.06 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.21 -5.23 5.31 56.52 0.30 -4.93 16 24 C 0.07 0.93 6.48 -2.83 -0.02 0.91 16 25 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.34 5.52 -51.93 -0.29 0.06 16 29 H 0.08 0.57 7.69 -51.93 -0.40 0.17 16 30 H 0.42 2.44 8.62 -34.47 -0.30 2.14 16 31 H 0.09 0.93 7.64 -51.93 -0.40 0.54 16 32 H 0.09 0.63 6.22 -51.93 -0.32 0.31 16 33 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.04 0.68 7.85 -51.93 -0.41 0.28 16 36 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 37 H 0.35 7.27 9.04 45.56 0.41 7.68 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.08 1.05 7.78 -51.93 -0.40 0.64 16 40 H 0.07 0.93 7.55 -51.93 -0.39 0.54 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -35.89 327.05 -8.85 -44.74 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.44 Total: 5.93 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -0.39 Total: -14.35 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.45 Total: -44.38 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -2.38 Total: -41.96 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Atomic # 16 Polarization: 28.57 SS G_CDS: -0.53 Total: 28.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.89 -8.85 -44.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930178397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.135 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds