Wall clock time and date at job start Tue Mar 31 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47072 * 2 1 4 4 S 1.65601 * 120.00018 * 165.00203 * 3 2 1 5 5 O 1.42105 * 104.27886 * 308.92747 * 4 3 2 6 6 O 1.42100 * 104.28089 * 181.07274 * 4 3 2 7 7 C 1.81394 * 104.45114 * 65.00073 * 4 3 2 8 8 H 1.08995 * 110.62950 * 61.89637 * 7 4 3 9 9 C 1.55140 * 110.70815 * 298.59907 * 7 4 3 10 10 C 1.54907 * 101.65799 * 205.96406 * 9 7 4 11 11 N 1.47845 * 104.79145 * 37.06783 * 10 9 7 12 12 C 1.46906 * 110.99647 * 213.63735 * 11 10 9 13 13 C 1.53002 * 109.47053 * 290.84326 * 12 11 10 14 14 H 1.09004 * 109.47006 * 60.00213 * 13 12 11 15 15 O 1.42896 * 109.47217 * 300.00068 * 13 12 11 16 16 C 1.50696 * 109.46999 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00355 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00777 * 180.02562 * 18 16 13 20 20 Si 1.86811 * 119.99592 * 0.02562 * 18 16 13 21 21 H 1.48506 * 109.46642 * 90.00053 * 20 18 16 22 22 H 1.48502 * 109.47012 * 209.99745 * 20 18 16 23 23 H 1.48495 * 109.47152 * 329.99991 * 20 18 16 24 24 C 1.47441 * 108.57385 * 335.90448 * 11 10 9 25 25 H 1.09008 * 109.47002 * 299.99658 * 1 2 3 26 26 H 1.08997 * 109.47514 * 59.99999 * 1 2 3 27 27 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47430 * 240.00036 * 2 1 3 29 29 H 1.08997 * 109.47514 * 120.00001 * 2 1 3 30 30 H 0.97003 * 120.00331 * 345.00109 * 3 2 1 31 31 H 1.09000 * 110.98645 * 324.05687 * 9 7 4 32 32 H 1.08998 * 110.99335 * 87.82932 * 9 7 4 33 33 H 1.09000 * 110.36912 * 278.24381 * 10 9 7 34 34 H 1.08996 * 110.37416 * 155.89519 * 10 9 7 35 35 H 1.08992 * 109.47459 * 50.84409 * 12 11 10 36 36 H 1.09004 * 109.47040 * 170.84560 * 12 11 10 37 37 H 0.96699 * 114.00604 * 300.00154 * 15 13 12 38 38 H 0.96999 * 120.00276 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.88870 * 120.39556 * 24 11 10 40 40 H 1.08997 * 109.89260 * 241.58618 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7001 0.3711 5 8 3.8180 1.0142 1.5965 6 8 3.6994 3.1157 0.2964 7 6 4.5449 0.9243 -0.9691 8 1 4.2922 1.3759 -1.9284 9 6 4.2996 -0.6073 -0.9980 10 6 5.6034 -1.1207 -1.6585 11 7 6.6682 -0.2471 -1.1211 12 6 7.7208 -0.0240 -2.1213 13 6 8.4920 -1.3256 -2.3491 14 1 7.8081 -2.0953 -2.7069 15 8 9.0850 -1.7493 -1.1200 16 6 9.5713 -1.0969 -3.3756 17 1 9.6952 -0.1207 -3.8206 18 6 10.4008 -2.1338 -3.7466 19 7 11.3431 -1.9341 -4.6421 20 14 10.1862 -3.8226 -2.9774 21 1 9.2353 -4.6205 -3.7926 22 1 11.4990 -4.5150 -2.9292 23 1 9.6536 -3.6746 -1.5991 24 6 6.0609 1.0286 -0.6996 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.4149 2.1090 -0.2174 31 1 4.1907 -1.0043 0.0113 32 1 3.4298 -0.8520 -1.6075 33 1 5.5434 -1.0230 -2.7425 34 1 5.7869 -2.1583 -1.3796 35 1 7.2685 0.2992 -3.0588 36 1 8.4047 0.7457 -1.7635 37 1 9.7065 -1.1118 -0.7427 38 1 11.9264 -2.6638 -4.9033 39 1 6.2382 1.1902 0.3637 40 1 6.4847 1.8499 -1.2774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930178397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:33 Heat of formation + Delta-G solvation = -143.490515 kcal Electronic energy + Delta-G solvation = -22390.358970 eV Core-core repulsion = 18945.165739 eV Total energy + Delta-G solvation = -3445.193230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21371 -38.31451 -37.66030 -37.13883 -36.77533 -34.41152 -33.30789 -30.58770 -30.26517 -29.92432 -26.53440 -23.93076 -23.05834 -22.71846 -21.60104 -20.38139 -19.37610 -18.73982 -17.97293 -17.54635 -16.89561 -16.78295 -16.15797 -16.08285 -15.78348 -15.63238 -15.21367 -14.83272 -14.53911 -14.47064 -14.12769 -13.71640 -13.59849 -13.30548 -13.22428 -13.02651 -12.90809 -12.86565 -12.65546 -12.52937 -12.49609 -12.38603 -12.12203 -12.02180 -11.77396 -11.49228 -11.06429 -10.80690 -10.35061 -10.11211 -9.26587 -8.35884 -6.50946 -0.82057 1.39822 1.46408 1.71307 1.77331 2.44537 2.64809 2.92166 2.98505 3.03237 3.28780 3.52459 3.85209 4.06167 4.10908 4.15192 4.24670 4.29579 4.31653 4.41399 4.49683 4.52868 4.59577 4.75004 4.85491 4.89801 4.96751 5.02392 5.14900 5.19184 5.39042 5.42590 5.47453 6.00211 6.04011 6.09408 6.11598 6.61992 7.22441 7.37636 8.78283 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031290 B = 0.003711 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.650456 B = 7543.713553 C = 7926.298037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 N -1.108 6.108 4 S 2.639 3.361 5 O -0.982 6.982 6 O -0.993 6.993 7 C -0.605 4.605 8 H 0.165 0.835 9 C -0.104 4.104 10 C 0.040 3.960 11 N -0.526 5.526 12 C 0.044 3.956 13 C 0.211 3.789 14 H 0.051 0.949 15 O -0.574 6.574 16 C -0.568 4.568 17 H 0.036 0.964 18 C 0.028 3.972 19 N -0.941 5.941 20 Si 0.939 3.061 21 H -0.282 1.282 22 H -0.299 1.299 23 H -0.205 1.205 24 C 0.056 3.944 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.425 0.575 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.365 0.635 38 H 0.267 0.733 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.238 3.655 8.178 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.033 4.033 3 N -0.871 5.871 4 S 2.732 3.268 5 O -0.972 6.972 6 O -0.983 6.983 7 C -0.716 4.716 8 H 0.182 0.818 9 C -0.142 4.142 10 C -0.088 4.088 11 N -0.251 5.251 12 C -0.084 4.084 13 C 0.152 3.848 14 H 0.069 0.931 15 O -0.380 6.380 16 C -0.606 4.606 17 H 0.054 0.946 18 C -0.171 4.171 19 N -0.580 5.580 20 Si 0.763 3.237 21 H -0.209 1.209 22 H -0.226 1.226 23 H -0.127 1.127 24 C -0.074 4.074 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.262 0.738 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.212 0.788 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.832 3.173 9.228 25.752 hybrid contribution 0.537 0.463 -1.630 1.778 sum -23.295 3.636 7.598 24.771 Atomic orbital electron populations 1.21974 0.92878 1.03940 1.02945 1.21773 0.97664 0.80728 1.03180 1.55317 1.27542 1.15766 1.88507 1.03987 0.74186 0.72977 0.75606 1.93564 1.85429 1.76546 1.41649 1.93553 1.86271 1.30577 1.87915 1.31797 1.08576 1.10019 1.21172 0.81768 1.22880 0.99302 0.88108 1.03923 1.23139 0.89413 0.98259 0.97984 1.63519 1.11155 1.11636 1.38757 1.22796 0.93767 0.99171 0.92660 1.19479 0.90894 0.92249 0.82162 0.93085 1.86590 1.62824 1.48277 1.40290 1.21859 1.17172 0.97309 1.24256 0.94574 1.25858 0.93671 1.03664 0.93937 1.70082 1.20446 1.34413 1.33047 0.85981 0.77001 0.77798 0.82914 1.20886 1.22582 1.12729 1.22629 0.89274 0.93646 1.01836 0.92345 0.91023 0.89689 0.89215 0.90784 0.73829 0.88752 0.85346 0.92896 0.90054 0.94690 0.91366 0.78786 0.92437 0.90524 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 10.05 71.98 0.72 -0.28 16 2 C 0.09 0.86 5.86 86.38 0.51 1.37 16 3 N -1.11 -13.72 5.89 -187.50 -1.10 -14.82 16 4 S 2.64 52.86 4.94 -56.49 -0.28 52.58 16 5 O -0.98 -26.56 17.08 -127.65 -2.18 -28.74 16 6 O -0.99 -26.30 18.08 -127.65 -2.31 -28.60 16 7 C -0.60 -11.14 3.67 31.78 0.12 -11.02 16 8 H 0.16 2.23 8.14 -2.39 -0.02 2.21 16 9 C -0.10 -1.78 4.94 31.98 0.16 -1.62 16 10 C 0.04 1.04 5.78 86.77 0.50 1.54 16 11 N -0.53 -16.55 5.03 -885.52 -4.45 -21.00 16 12 C 0.04 1.65 4.17 86.30 0.36 2.01 16 13 C 0.21 9.44 2.30 29.85 0.07 9.51 16 14 H 0.05 2.32 6.92 -2.38 -0.02 2.30 16 15 O -0.57 -25.24 10.01 -148.98 -1.49 -26.73 16 16 C -0.57 -31.38 9.34 25.60 0.24 -31.14 16 17 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 18 C 0.03 1.63 5.47 84.65 0.46 2.09 16 19 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 20 Si 0.94 44.79 26.99 68.60 1.85 46.64 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.21 -9.42 5.31 99.48 0.53 -8.89 16 24 C 0.06 1.44 6.48 86.65 0.56 2.00 16 25 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.09 0.48 5.52 -2.38 -0.01 0.47 16 29 H 0.07 0.85 7.69 -2.39 -0.02 0.83 16 30 H 0.43 3.87 8.62 -96.74 -0.83 3.04 16 31 H 0.09 1.63 7.64 -2.39 -0.02 1.61 16 32 H 0.13 1.19 6.22 -2.39 -0.01 1.17 16 33 H 0.05 1.37 7.62 -2.39 -0.02 1.35 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 36 H 0.07 2.56 8.03 -2.38 -0.02 2.54 16 37 H 0.37 14.56 9.04 -74.06 -0.67 13.89 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.08 1.99 7.78 -2.39 -0.02 1.97 16 40 H 0.08 1.88 7.55 -2.39 -0.02 1.87 16 Total: -1.00 -77.67 327.05 -6.59 -84.27 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.63 Total: 19.79 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.70 Total: -25.54 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -5.26 Total: -93.66 kcal Atomic # 8 Polarization: -78.10 SS G_CDS: -5.98 Total: -84.07 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.85 Total: 46.64 kcal Atomic # 16 Polarization: 52.86 SS G_CDS: -0.28 Total: 52.58 kcal Total: -77.67 -6.59 -84.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930178397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.225 kcal (2) G-P(sol) polarization free energy of solvation -77.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds