Wall clock time and date at job start Tue Mar 31 2020 03:06:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.35508 * 117.00528 * 2 1
4 4 C 1.39634 * 120.49594 * 179.97438 * 3 2 1
5 5 C 1.39149 * 118.20735 * 180.02562 * 4 3 2
6 6 C 1.48445 * 120.51848 * 179.97438 * 5 4 3
7 7 O 1.21482 * 120.00349 * 342.70751 * 6 5 4
8 8 N 1.34774 * 120.00073 * 162.69572 * 6 5 4
9 9 C 1.46966 * 120.59889 * 176.86796 * 8 6 5
10 10 C 1.53817 * 108.39983 * 124.75952 * 9 8 6
11 11 N 1.46965 * 108.57295 * 49.64101 * 10 9 8
12 12 C 1.36938 * 120.58863 * 124.66912 * 11 10 9
13 13 H 1.07996 * 119.99965 * 215.29457 * 12 11 10
14 14 C 1.38808 * 120.00104 * 35.30102 * 12 11 10
15 15 N 1.31618 * 120.00055 * 4.07731 * 14 12 11
16 16 Si 1.86807 * 120.00075 * 184.07867 * 14 12 11
17 17 H 1.48493 * 109.47237 * 59.99807 * 16 14 12
18 18 H 1.48497 * 109.46926 * 180.02562 * 16 14 12
19 19 H 1.48509 * 109.46948 * 299.99618 * 16 14 12
20 20 C 1.46965 * 118.81517 * 304.64576 * 11 10 9
21 21 C 1.46970 * 120.59234 * 357.15744 * 8 6 5
22 22 N 1.33279 * 118.96338 * 0.02562 * 5 4 3
23 23 C 1.31526 * 120.88671 * 359.97438 * 22 5 4
24 24 N 1.31887 * 121.98998 * 359.71360 * 23 22 5
25 25 H 1.08998 * 109.47643 * 299.99741 * 1 2 3
26 26 H 1.09005 * 109.47528 * 59.99958 * 1 2 3
27 27 H 1.09000 * 109.47315 * 180.02562 * 1 2 3
28 28 H 1.08001 * 120.89885 * 0.02861 * 4 3 2
29 29 H 1.08995 * 109.61196 * 244.54870 * 9 8 6
30 30 H 1.09004 * 109.60178 * 5.06180 * 9 8 6
31 31 H 1.08996 * 109.73916 * 289.85823 * 10 9 8
32 32 H 1.08993 * 109.53118 * 169.30476 * 10 9 8
33 33 H 0.97001 * 119.99806 * 179.97438 * 15 14 12
34 34 H 1.08996 * 109.60989 * 295.48025 * 20 11 10
35 35 H 1.09002 * 109.60905 * 174.97491 * 20 11 10
36 36 H 1.08993 * 109.60896 * 354.93740 * 21 8 6
37 37 H 1.09003 * 109.60920 * 115.45668 * 21 8 6
38 38 H 1.08003 * 119.00397 * 180.02562 * 23 22 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0442 1.2073 0.0000
4 6 3.4380 1.2923 0.0005
5 6 4.0198 2.5563 0.0011
6 6 5.4966 2.7064 0.0022
7 8 6.2023 1.7685 0.3154
8 7 6.0547 3.8832 -0.3445
9 6 7.5114 4.0675 -0.2822
10 6 8.0017 4.5312 -1.6644
11 7 7.1638 5.6551 -2.1055
12 6 7.7308 6.8508 -2.4576
13 1 7.2209 7.7765 -2.2353
14 6 8.9609 6.8731 -3.1004
15 7 9.5447 5.7444 -3.4434
16 14 9.7877 8.5049 -3.4787
17 1 10.0311 9.2417 -2.2127
18 1 11.0813 8.2571 -4.1645
19 1 8.9075 9.3131 -4.3605
20 6 5.7066 5.4727 -2.1624
21 6 5.2168 5.0072 -0.7855
22 7 3.2304 3.6302 0.0016
23 6 1.9210 3.5057 0.0010
24 7 1.3314 2.3260 -0.0056
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3634 -1.0276 0.0005
28 1 4.0480 0.4011 0.0005
29 1 7.7531 4.8217 0.4666
30 1 7.9887 3.1229 -0.0210
31 1 7.9195 3.7115 -2.3782
32 1 9.0400 4.8549 -1.5930
33 1 10.4041 5.7600 -3.8929
34 1 5.4612 4.7201 -2.9117
35 1 5.2294 6.4182 -2.4200
36 1 4.1785 4.6835 -0.8569
37 1 5.2990 5.8269 -0.0717
38 1 1.3103 4.3964 0.0010
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000933235978.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:06:12
Heat of formation + Delta-G solvation = 33.129911 kcal
Electronic energy + Delta-G solvation = -23380.542925 eV
Core-core repulsion = 19839.857331 eV
Total energy + Delta-G solvation = -3540.685594 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.60465 -39.61603 -38.53307 -36.81694 -34.16029 -33.38285 -32.04089 -31.15551
-30.17212 -28.05516 -27.04184 -25.06167 -24.53163 -23.37635 -22.67184 -21.04068
-19.50898 -18.55713 -18.12268 -16.68925 -16.53239 -16.02906 -15.85890 -15.62053
-15.18125 -14.96283 -14.77637 -14.48299 -14.06770 -13.59761 -13.39647 -13.25613
-13.19918 -12.43371 -12.40816 -12.06965 -11.72278 -11.15112 -11.00541 -10.84568
-10.69148 -10.57753 -10.46699 -10.18294 -10.14341 -10.04151 -9.91601 -9.43225
-8.91499 -8.53927 -8.26284 -6.56834 -5.82293 -3.37301 0.38764 0.76484
2.46873 2.84907 3.23282 3.35821 3.41201 3.41782 3.63890 3.76095
3.89922 4.44302 4.49801 4.75787 4.86867 4.93604 5.04373 5.22551
5.35483 5.36516 5.45946 5.74521 5.92977 5.96737 6.12353 6.27716
6.33521 6.47327 6.48704 6.69282 6.75973 6.82036 6.94953 7.28090
7.60301 7.68588 7.74001 7.84141 8.35883 8.44932 9.16955 9.75924
10.36698 11.24152
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.035574 B = 0.003546 C = 0.003367
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 786.899615 B = 7893.276052 C = 8313.030786
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.298 6.298
3 C 0.363 3.637
4 C -0.187 4.187
5 C 0.171 3.829
6 C 0.556 3.444
7 O -0.541 6.541
8 N -0.564 5.564
9 C 0.081 3.919
10 C 0.161 3.839
11 N -0.593 5.593
12 C -0.258 4.258
13 H 0.064 0.936
14 C 0.009 3.991
15 N -0.904 5.904
16 Si 0.907 3.093
17 H -0.282 1.282
18 H -0.290 1.290
19 H -0.282 1.282
20 C 0.130 3.870
21 C 0.055 3.945
22 N -0.505 5.505
23 C 0.328 3.672
24 N -0.568 5.568
25 H 0.063 0.937
26 H 0.063 0.937
27 H 0.101 0.899
28 H 0.164 0.836
29 H 0.065 0.935
30 H 0.081 0.919
31 H 0.023 0.977
32 H 0.103 0.897
33 H 0.257 0.743
34 H 0.018 0.982
35 H 0.066 0.934
36 H 0.133 0.867
37 H 0.064 0.936
38 H 0.207 0.793
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.086 -7.338 7.221 19.948
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.202 6.202
3 C 0.175 3.825
4 C -0.211 4.211
5 C 0.028 3.972
6 C 0.341 3.659
7 O -0.419 6.419
8 N -0.293 5.293
9 C -0.042 4.042
10 C 0.034 3.966
11 N -0.316 5.316
12 C -0.388 4.388
13 H 0.082 0.918
14 C -0.191 4.191
15 N -0.548 5.548
16 Si 0.737 3.263
17 H -0.208 1.208
18 H -0.216 1.216
19 H -0.208 1.208
20 C 0.003 3.997
21 C -0.069 4.069
22 N -0.226 5.226
23 C 0.041 3.959
24 N -0.299 5.299
25 H 0.081 0.919
26 H 0.082 0.918
27 H 0.119 0.881
28 H 0.182 0.818
29 H 0.083 0.917
30 H 0.100 0.900
31 H 0.042 0.958
32 H 0.121 0.879
33 H 0.067 0.933
34 H 0.036 0.964
35 H 0.084 0.916
36 H 0.149 0.851
37 H 0.083 0.917
38 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -16.936 -7.359 7.266 19.844
hybrid contribution 0.634 0.299 -0.325 0.773
sum -16.302 -7.060 6.941 19.073
Atomic orbital electron populations
1.22992 0.76380 1.03531 1.02893 1.86263 1.23576 1.23701 1.86625
1.20024 0.89205 0.85162 0.88074 1.21881 0.92611 1.00571 1.06043
1.21646 0.95407 0.88445 0.91708 1.17723 0.84950 0.83675 0.79572
1.90763 1.61465 1.39125 1.50515 1.48007 1.08935 1.11456 1.60898
1.22817 0.77920 1.01244 1.02230 1.21300 0.97459 0.89464 0.88336
1.43952 0.99754 1.11391 1.76473 1.19122 1.03274 0.84666 1.31726
0.91803 1.25327 0.99557 0.96858 0.97311 1.69898 1.17305 1.24733
1.42863 0.86311 0.78575 0.83223 0.78229 1.20848 1.21562 1.20799
1.21374 0.86898 0.98585 0.92882 1.23526 0.97325 0.88180 0.97838
1.68557 1.06023 1.31551 1.16497 1.24911 0.88531 0.93881 0.88578
1.68034 1.41956 0.99309 1.20642 0.91870 0.91782 0.88109 0.81792
0.91656 0.90028 0.95849 0.87903 0.93321 0.96405 0.91571 0.85082
0.91742 0.77660
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.26 10.41 101.05 1.05 1.31 16
2 O -0.30 -3.18 10.49 -18.22 -0.19 -3.37 16
3 C 0.36 4.39 7.54 -16.68 -0.13 4.27 16
4 C -0.19 -2.53 9.67 -38.72 -0.37 -2.90 16
5 C 0.17 2.59 6.53 -82.70 -0.54 2.05 16
6 C 0.56 10.20 7.66 -12.06 -0.09 10.11 16
7 O -0.54 -11.06 15.95 5.38 0.09 -10.97 16
8 N -0.56 -10.73 2.94 -173.10 -0.51 -11.24 16
9 C 0.08 1.65 6.63 -3.36 -0.02 1.63 16
10 C 0.16 3.87 5.44 -3.36 -0.02 3.86 16
11 N -0.59 -14.72 2.95 -171.77 -0.51 -15.23 16
12 C -0.26 -6.92 9.55 -15.06 -0.14 -7.07 16
13 H 0.06 1.67 7.83 -52.49 -0.41 1.25 16
14 C 0.01 0.24 5.17 -17.43 -0.09 0.15 16
15 N -0.90 -25.85 10.95 55.49 0.61 -25.24 16
16 Si 0.91 21.27 29.56 -169.99 -5.02 16.25 16
17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
20 C 0.13 2.69 6.67 -3.60 -0.02 2.66 16
21 C 0.06 0.97 6.17 -3.59 -0.02 0.95 16
22 N -0.50 -6.68 6.44 -11.20 -0.07 -6.76 16
23 C 0.33 3.44 12.27 -92.30 -1.13 2.31 16
24 N -0.57 -6.35 9.36 -14.65 -0.14 -6.49 16
25 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16
26 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16
27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16
28 H 0.16 2.15 7.82 -52.49 -0.41 1.74 16
29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
30 H 0.08 1.64 6.99 -51.93 -0.36 1.27 16
31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16
32 H 0.10 2.72 6.11 -51.93 -0.32 2.40 16
33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16
35 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16
36 H 0.13 2.04 3.93 -80.88 -0.32 1.72 16
37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
38 H 0.21 1.32 8.06 -52.48 -0.42 0.90 16
LS Contribution 317.60 15.07 4.79 4.79
Total: -1.00 -31.70 317.60 -7.24 -38.94
By element:
Atomic # 1 Polarization: 4.74 SS G_CDS: -4.75 Total: 0.00 kcal
Atomic # 6 Polarization: 20.86 SS G_CDS: -1.53 Total: 19.32 kcal
Atomic # 7 Polarization: -64.33 SS G_CDS: -0.62 Total: -64.95 kcal
Atomic # 8 Polarization: -14.24 SS G_CDS: -0.11 Total: -14.35 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -31.70 -7.24 -38.94 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000933235978.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.072 kcal
(2) G-P(sol) polarization free energy of solvation -31.702 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.370 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.130 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds