Wall clock time and date at job start Tue Mar 31 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00264 * 2 1 4 4 H 1.08000 * 119.99777 * 154.65541 * 3 2 1 5 5 C 1.38805 * 119.99850 * 334.37700 * 3 2 1 6 6 N 1.31620 * 120.00183 * 354.40760 * 5 3 2 7 7 Si 1.86798 * 119.99959 * 174.40044 * 5 3 2 8 8 H 1.48499 * 109.47082 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47144 * 120.00403 * 7 5 3 10 10 H 1.48500 * 109.47439 * 240.00651 * 7 5 3 11 11 C 1.46503 * 119.99459 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.87976 * 176.11929 * 11 2 1 13 13 C 1.55156 * 111.00767 * 299.99618 * 11 2 1 14 14 C 1.54323 * 102.94145 * 153.57794 * 13 11 2 15 15 N 1.47025 * 107.27259 * 337.81019 * 14 13 11 16 16 C 1.34770 * 125.64616 * 178.91977 * 15 14 13 17 17 O 1.21516 * 120.00041 * 175.00560 * 16 15 14 18 18 C 1.48147 * 120.00318 * 355.00728 * 16 15 14 19 19 C 1.39891 * 121.12441 * 187.30959 * 18 16 15 20 20 N 1.31767 * 119.78732 * 179.70997 * 19 18 16 21 21 N 1.28276 * 122.41967 * 0.58935 * 20 19 18 22 22 C 1.32272 * 122.43405 * 359.68958 * 21 20 19 23 23 O 1.35701 * 120.08214 * 180.02562 * 22 21 20 24 24 C 1.39243 * 119.84031 * 0.02562 * 22 21 20 25 25 C 1.47425 * 108.70211 * 358.93917 * 15 14 13 26 26 H 1.08999 * 109.47212 * 94.54191 * 1 2 3 27 27 H 1.09000 * 109.47630 * 214.54992 * 1 2 3 28 28 H 1.09008 * 109.46736 * 334.54069 * 1 2 3 29 29 H 0.96999 * 120.00120 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.72330 * 271.94482 * 13 11 2 31 31 H 1.09002 * 110.71599 * 35.04027 * 13 11 2 32 32 H 1.08996 * 109.88126 * 97.23220 * 14 13 11 33 33 H 1.09003 * 109.88079 * 218.24017 * 14 13 11 34 34 H 1.08004 * 120.10546 * 359.97438 * 19 18 16 35 35 H 0.96699 * 114.00167 * 269.98302 * 23 22 21 36 36 H 1.07998 * 121.11583 * 179.97438 * 24 22 21 37 37 H 1.08996 * 110.36831 * 265.29132 * 25 15 14 38 38 H 1.09000 * 110.36497 * 142.96362 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1518 1.2308 0.4004 5 6 1.5581 2.3289 -0.5198 6 7 0.3850 2.2517 -1.1118 7 14 2.4267 3.9766 -0.3792 8 1 3.7220 3.7950 0.3238 9 1 2.6736 4.5236 -1.7375 10 1 1.5752 4.9213 0.3875 11 6 2.1974 -1.2688 0.0006 12 1 3.2716 -1.0973 -0.0684 13 6 1.8483 -2.1120 1.2554 14 6 2.1062 -3.5582 0.7827 15 7 2.0263 -3.5585 -0.6854 16 6 2.2140 -4.6292 -1.4820 17 8 2.0343 -4.5341 -2.6801 18 6 2.6393 -5.9222 -0.8972 19 6 2.9869 -7.0049 -1.7120 20 7 3.3670 -8.1412 -1.1638 21 7 3.4235 -8.3067 0.1070 22 6 3.1103 -7.3472 0.9620 23 8 3.1877 -7.5743 2.2976 24 6 2.7009 -6.1035 0.4882 25 6 1.7073 -2.1934 -1.1417 26 1 -0.3633 -0.0814 -1.0244 27 1 -0.3634 -0.8464 0.5828 28 1 -0.3633 0.9280 0.4418 29 1 -0.0286 3.0505 -1.4747 30 1 2.5042 -1.8554 2.0872 31 1 0.8033 -1.9749 1.5336 32 1 3.0978 -3.8806 1.1000 33 1 1.3496 -4.2243 1.1975 34 1 2.9480 -6.9083 -2.7870 35 1 2.3708 -7.9155 2.6866 36 1 2.4399 -5.3057 1.1677 37 1 0.6324 -2.0826 -1.2846 38 1 2.2390 -1.9685 -2.0662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971742358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:33 Heat of formation + Delta-G solvation = 44.448341 kcal Electronic energy + Delta-G solvation = -23215.379123 eV Core-core repulsion = 19675.184332 eV Total energy + Delta-G solvation = -3540.194790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69783 -39.90900 -38.08416 -37.57302 -35.18955 -33.72720 -31.86931 -31.56884 -30.07129 -28.29298 -26.23250 -26.03542 -24.75231 -23.46540 -22.57529 -20.62379 -19.52483 -19.16051 -17.94336 -17.28039 -17.17531 -16.76201 -16.18156 -15.93868 -15.46693 -14.91437 -14.39778 -14.08897 -13.91171 -13.64125 -13.32784 -12.94657 -12.65880 -12.62308 -12.51173 -12.16264 -11.69470 -11.48573 -10.99429 -10.95569 -10.68316 -10.62538 -10.53214 -10.50652 -10.38007 -10.11917 -10.02781 -9.95431 -9.66750 -8.74125 -8.59719 -6.91129 -5.89684 -3.39077 -0.03659 0.38581 2.48673 2.73094 2.92059 3.28934 3.29491 3.36909 3.38491 3.82342 4.02374 4.14559 4.32172 4.40490 4.70502 4.72037 4.94746 5.02590 5.12879 5.19725 5.40352 5.45455 5.53609 5.65058 5.71007 5.80317 6.10319 6.15963 6.24099 6.42896 6.67510 6.71319 6.87644 7.25203 7.38959 7.58136 7.68338 7.91787 8.24602 8.26324 9.07656 9.67531 10.16630 11.15923 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031428 B = 0.003426 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.708571 B = 8169.794916 C = 8580.753165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.583 5.583 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.904 5.904 7 Si 0.909 3.091 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.288 1.288 11 C 0.172 3.828 12 H 0.080 0.920 13 C -0.156 4.156 14 C 0.087 3.913 15 N -0.599 5.599 16 C 0.568 3.432 17 O -0.524 6.524 18 C -0.102 4.102 19 C 0.083 3.917 20 N -0.217 5.217 21 N -0.249 5.249 22 C 0.255 3.745 23 O -0.471 6.471 24 C -0.136 4.136 25 C 0.086 3.914 26 H 0.019 0.981 27 H -0.005 1.005 28 H 0.066 0.934 29 H 0.255 0.745 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.190 0.810 35 H 0.407 0.593 36 H 0.190 0.810 37 H 0.075 0.925 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -15.514 6.418 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.303 5.303 3 C -0.393 4.393 4 H 0.089 0.911 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.739 3.261 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.061 3.939 12 H 0.098 0.902 13 C -0.196 4.196 14 C -0.036 4.036 15 N -0.332 5.332 16 C 0.355 3.645 17 O -0.401 6.401 18 C -0.117 4.117 19 C -0.082 4.082 20 N -0.060 5.060 21 N -0.102 5.102 22 C 0.069 3.931 23 O -0.276 6.276 24 C -0.166 4.166 25 C -0.037 4.037 26 H 0.037 0.963 27 H 0.013 0.987 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.207 0.793 35 H 0.266 0.734 36 H 0.206 0.794 37 H 0.093 0.907 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.485 -16.647 5.472 17.698 hybrid contribution -0.590 2.136 0.361 2.245 sum 1.894 -14.511 5.833 15.754 Atomic orbital electron populations 1.20869 0.82266 0.97742 0.97747 1.43848 1.01971 0.99710 1.84777 1.19278 0.99943 0.85745 1.34343 0.91104 1.25157 0.97360 0.99045 0.97594 1.70052 1.16384 1.28037 1.40367 0.86119 0.78976 0.83608 0.77424 1.20193 1.21501 1.21499 1.21489 0.96623 0.85894 0.89880 0.90155 1.23288 1.03407 0.91966 1.00974 1.22565 1.00602 0.99960 0.80423 1.48432 1.67607 1.09813 1.07310 1.17514 0.78843 0.82195 0.85974 1.90822 1.51588 1.83678 1.14030 1.21328 0.99962 0.96679 0.93691 1.24645 0.91963 0.88353 1.03275 1.73140 1.10105 1.20211 1.02585 1.72742 1.11059 1.28359 0.98015 1.20802 0.95535 0.90317 0.86471 1.84819 1.41285 1.86820 1.14717 1.24223 0.95573 1.00012 0.96805 1.23233 1.01673 0.78151 1.00656 0.96298 0.98654 0.91553 0.93481 0.90105 0.90050 0.90733 0.91050 0.79320 0.73443 0.79371 0.90682 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.56 7.70 59.85 0.46 4.02 16 2 N -0.58 -13.24 2.96 -171.03 -0.51 -13.74 16 3 C -0.26 -6.72 9.61 -15.06 -0.14 -6.86 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 5 C 0.01 0.20 5.19 -17.43 -0.09 0.11 16 6 N -0.90 -24.96 10.54 55.49 0.58 -24.37 16 7 Si 0.91 20.75 29.56 -169.99 -5.02 15.73 16 8 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.09 3.54 -65.78 -0.23 2.86 16 12 H 0.08 1.47 7.96 -51.93 -0.41 1.05 16 13 C -0.16 -2.12 6.53 -24.90 -0.16 -2.28 16 14 C 0.09 0.95 4.89 -3.06 -0.01 0.94 16 15 N -0.60 -8.54 3.33 -171.53 -0.57 -9.11 16 16 C 0.57 8.34 7.83 -12.19 -0.10 8.24 16 17 O -0.52 -9.39 16.77 5.35 0.09 -9.30 16 18 C -0.10 -1.21 5.91 -104.60 -0.62 -1.83 16 19 C 0.08 0.98 10.90 -16.96 -0.18 0.79 16 20 N -0.22 -2.78 11.48 30.79 0.35 -2.43 16 21 N -0.25 -3.15 11.50 30.49 0.35 -2.79 16 22 C 0.25 2.62 7.85 -16.99 -0.13 2.48 16 23 O -0.47 -3.70 13.57 -18.81 -0.26 -3.95 16 24 C -0.14 -1.33 8.69 -38.60 -0.34 -1.67 16 25 C 0.09 1.50 6.44 -2.53 -0.02 1.49 16 26 H 0.02 0.46 7.64 -51.93 -0.40 0.06 16 27 H 0.00 -0.09 6.39 -51.93 -0.33 -0.43 16 28 H 0.07 1.66 6.64 -51.92 -0.34 1.31 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.15 6.36 -51.93 -0.33 0.82 16 32 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 33 H 0.07 0.61 6.82 -51.93 -0.35 0.25 16 34 H 0.19 1.95 7.76 -52.48 -0.41 1.54 16 35 H 0.41 1.01 9.06 45.56 0.41 1.42 16 36 H 0.19 1.47 3.07 -52.49 -0.16 1.31 16 37 H 0.07 1.41 6.89 -51.93 -0.36 1.05 16 38 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -31.75 313.76 -5.24 -36.99 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.42 Total: -0.02 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.57 Total: 8.28 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.21 Total: -52.45 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.17 Total: -13.25 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.75 -5.24 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971742358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.437 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds