Wall clock time and date at job start Tue Mar 31 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00264 * 2 1 4 4 H 1.08000 * 119.99777 * 154.65541 * 3 2 1 5 5 C 1.38805 * 119.99850 * 334.37700 * 3 2 1 6 6 N 1.31620 * 120.00183 * 354.40760 * 5 3 2 7 7 Si 1.86798 * 119.99959 * 174.40044 * 5 3 2 8 8 H 1.48499 * 109.47082 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47144 * 120.00403 * 7 5 3 10 10 H 1.48500 * 109.47439 * 240.00651 * 7 5 3 11 11 C 1.46503 * 119.99459 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.87976 * 176.11929 * 11 2 1 13 13 C 1.55156 * 111.00767 * 299.99618 * 11 2 1 14 14 C 1.54323 * 102.94145 * 153.57794 * 13 11 2 15 15 N 1.47025 * 107.27259 * 337.81019 * 14 13 11 16 16 C 1.34770 * 125.64616 * 178.91977 * 15 14 13 17 17 O 1.21516 * 120.00041 * 175.00560 * 16 15 14 18 18 C 1.48147 * 120.00318 * 355.00728 * 16 15 14 19 19 C 1.39891 * 121.12441 * 187.30959 * 18 16 15 20 20 N 1.31767 * 119.78732 * 179.70997 * 19 18 16 21 21 N 1.28276 * 122.41967 * 0.58935 * 20 19 18 22 22 C 1.32272 * 122.43405 * 359.68958 * 21 20 19 23 23 O 1.35701 * 120.08214 * 180.02562 * 22 21 20 24 24 C 1.39243 * 119.84031 * 0.02562 * 22 21 20 25 25 C 1.47425 * 108.70211 * 358.93917 * 15 14 13 26 26 H 1.08999 * 109.47212 * 94.54191 * 1 2 3 27 27 H 1.09000 * 109.47630 * 214.54992 * 1 2 3 28 28 H 1.09008 * 109.46736 * 334.54069 * 1 2 3 29 29 H 0.96999 * 120.00120 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.72330 * 271.94482 * 13 11 2 31 31 H 1.09002 * 110.71599 * 35.04027 * 13 11 2 32 32 H 1.08996 * 109.88126 * 97.23220 * 14 13 11 33 33 H 1.09003 * 109.88079 * 218.24017 * 14 13 11 34 34 H 1.08004 * 120.10546 * 359.97438 * 19 18 16 35 35 H 0.96699 * 114.00167 * 269.98302 * 23 22 21 36 36 H 1.07998 * 121.11583 * 179.97438 * 24 22 21 37 37 H 1.08996 * 110.36831 * 265.29132 * 25 15 14 38 38 H 1.09000 * 110.36497 * 142.96362 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1518 1.2308 0.4004 5 6 1.5581 2.3289 -0.5198 6 7 0.3850 2.2517 -1.1118 7 14 2.4267 3.9766 -0.3792 8 1 3.7220 3.7950 0.3238 9 1 2.6736 4.5236 -1.7375 10 1 1.5752 4.9213 0.3875 11 6 2.1974 -1.2688 0.0006 12 1 3.2716 -1.0973 -0.0684 13 6 1.8483 -2.1120 1.2554 14 6 2.1062 -3.5582 0.7827 15 7 2.0263 -3.5585 -0.6854 16 6 2.2140 -4.6292 -1.4820 17 8 2.0343 -4.5341 -2.6801 18 6 2.6393 -5.9222 -0.8972 19 6 2.9869 -7.0049 -1.7120 20 7 3.3670 -8.1412 -1.1638 21 7 3.4235 -8.3067 0.1070 22 6 3.1103 -7.3472 0.9620 23 8 3.1877 -7.5743 2.2976 24 6 2.7009 -6.1035 0.4882 25 6 1.7073 -2.1934 -1.1417 26 1 -0.3633 -0.0814 -1.0244 27 1 -0.3634 -0.8464 0.5828 28 1 -0.3633 0.9280 0.4418 29 1 -0.0286 3.0505 -1.4747 30 1 2.5042 -1.8554 2.0872 31 1 0.8033 -1.9749 1.5336 32 1 3.0978 -3.8806 1.1000 33 1 1.3496 -4.2243 1.1975 34 1 2.9480 -6.9083 -2.7870 35 1 2.3708 -7.9155 2.6866 36 1 2.4399 -5.3057 1.1677 37 1 0.6324 -2.0826 -1.2846 38 1 2.2390 -1.9685 -2.0662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971742358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:32 Heat of formation + Delta-G solvation = 18.260247 kcal Electronic energy + Delta-G solvation = -23216.514724 eV Core-core repulsion = 19675.184332 eV Total energy + Delta-G solvation = -3541.330391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.60118 -41.04606 -39.11127 -38.55021 -36.76382 -34.79987 -33.36063 -32.53887 -31.41576 -29.63626 -28.06852 -27.10725 -25.74648 -24.82759 -23.86647 -21.62981 -20.99315 -20.02165 -18.96837 -18.79304 -18.24643 -17.74791 -17.48801 -16.93871 -16.63354 -16.45559 -15.66868 -15.19424 -15.03404 -14.88852 -14.66870 -14.40312 -14.17279 -13.96386 -13.49147 -13.28632 -13.00417 -12.81642 -12.54222 -12.42849 -12.33750 -12.15344 -12.05012 -11.82638 -11.66614 -11.56365 -11.37260 -10.94048 -10.64420 -10.56785 -9.86611 -8.76328 -7.86480 -5.36784 -0.93316 -0.40424 1.44103 1.47731 1.49830 1.58132 1.60419 2.15740 2.39429 2.49897 2.93286 3.09683 3.28938 3.31158 3.43230 3.64268 3.84419 3.96577 3.97752 4.12519 4.23965 4.26542 4.38183 4.51350 4.66776 4.75424 4.81893 4.83588 4.97756 5.06841 5.22553 5.29182 5.45692 5.63594 5.75343 6.26030 6.34104 6.47623 6.76728 7.14176 7.39627 7.83227 8.27156 9.17719 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031428 B = 0.003426 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.708571 B = 8169.794916 C = 8580.753165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.600 5.600 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.049 4.049 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.263 1.263 9 H -0.297 1.297 10 H -0.291 1.291 11 C 0.163 3.837 12 H 0.076 0.924 13 C -0.141 4.141 14 C 0.085 3.915 15 N -0.598 5.598 16 C 0.570 3.430 17 O -0.566 6.566 18 C -0.109 4.109 19 C 0.082 3.918 20 N -0.235 5.235 21 N -0.274 5.274 22 C 0.267 3.733 23 O -0.470 6.470 24 C -0.113 4.113 25 C 0.098 3.902 26 H -0.012 1.012 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.248 0.752 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.194 0.806 35 H 0.432 0.568 36 H 0.215 0.785 37 H 0.058 0.942 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -17.016 9.111 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.321 5.321 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.244 4.244 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.187 1.187 9 H -0.224 1.224 10 H -0.218 1.218 11 C 0.054 3.946 12 H 0.095 0.905 13 C -0.181 4.181 14 C -0.036 4.036 15 N -0.329 5.329 16 C 0.358 3.642 17 O -0.446 6.446 18 C -0.123 4.123 19 C -0.084 4.084 20 N -0.078 5.078 21 N -0.126 5.126 22 C 0.080 3.920 23 O -0.280 6.280 24 C -0.142 4.142 25 C -0.027 4.027 26 H 0.007 0.993 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.211 0.789 35 H 0.295 0.705 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.410 -18.216 8.228 20.277 hybrid contribution -0.843 2.502 -0.392 2.669 sum 2.567 -15.714 7.836 17.746 Atomic orbital electron populations 1.20553 0.82594 0.97576 0.96207 1.44001 1.02085 1.00776 1.85273 1.19635 1.00016 0.86919 1.32899 0.90531 1.25873 0.98165 1.02199 0.98209 1.70220 1.17859 1.28240 1.42107 0.85173 0.78436 0.79897 0.76745 1.18722 1.22428 1.21788 1.21659 0.95910 0.84642 0.92387 0.90535 1.23133 1.03681 0.92289 0.98964 1.22885 1.03661 0.99072 0.77975 1.48387 1.67325 1.08324 1.08909 1.17855 0.77936 0.82913 0.85455 1.90804 1.53355 1.84460 1.15999 1.20997 1.01499 0.95052 0.94765 1.24724 0.91773 0.88213 1.03676 1.73127 1.10998 1.20589 1.03044 1.72658 1.12037 1.29698 0.98255 1.20811 0.94164 0.89827 0.87180 1.84791 1.43214 1.86923 1.13075 1.24385 0.93728 1.00279 0.95830 1.22785 1.00122 0.80354 0.99480 0.99339 0.95057 0.94524 0.94236 0.88079 0.90305 0.87746 0.87191 0.78926 0.70486 0.76894 0.92362 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.99 7.70 127.77 0.98 8.97 16 2 N -0.60 -27.19 2.96 -695.02 -2.06 -29.25 16 3 C -0.26 -13.48 9.61 84.03 0.81 -12.67 16 4 H 0.08 3.73 7.84 -2.91 -0.02 3.71 16 5 C -0.05 -2.62 5.19 84.86 0.44 -2.18 16 6 N -0.94 -53.45 10.54 21.65 0.23 -53.22 16 7 Si 0.97 43.13 29.56 68.60 2.03 45.16 16 8 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 9 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 C 0.16 5.65 3.54 46.38 0.16 5.81 16 12 H 0.08 2.70 7.96 -2.39 -0.02 2.68 16 13 C -0.14 -3.29 6.53 31.78 0.21 -3.08 16 14 C 0.09 1.45 4.89 86.73 0.42 1.88 16 15 N -0.60 -15.77 3.33 -814.88 -2.71 -18.48 16 16 C 0.57 15.96 7.83 86.88 0.68 16.64 16 17 O -0.57 -20.49 16.77 -3.77 -0.06 -20.56 16 18 C -0.11 -2.33 5.91 -19.85 -0.12 -2.45 16 19 C 0.08 1.84 10.90 85.10 0.93 2.76 16 20 N -0.24 -5.70 11.48 -56.51 -0.65 -6.35 16 21 N -0.27 -6.29 11.50 -170.30 -1.96 -8.25 16 22 C 0.27 4.47 7.85 84.87 0.67 5.14 16 23 O -0.47 -5.23 13.57 -90.21 -1.22 -6.45 16 24 C -0.11 -1.72 8.69 22.90 0.20 -1.52 16 25 C 0.10 3.38 6.44 86.85 0.56 3.94 16 26 H -0.01 -0.60 7.64 -2.39 -0.02 -0.62 16 27 H 0.03 1.17 6.39 -2.39 -0.02 1.16 16 28 H 0.04 1.86 6.64 -2.38 -0.02 1.84 16 29 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.93 6.36 -2.39 -0.02 1.91 16 32 H 0.10 1.28 6.68 -2.39 -0.02 1.26 16 33 H 0.11 1.16 6.82 -2.39 -0.02 1.15 16 34 H 0.19 3.97 7.76 -2.91 -0.02 3.94 16 35 H 0.43 0.04 9.06 -74.06 -0.67 -0.63 16 36 H 0.22 2.02 3.07 -2.92 -0.01 2.01 16 37 H 0.06 2.22 6.89 -2.39 -0.02 2.20 16 38 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 Total: -1.00 -71.79 313.76 -0.01 -71.80 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 0.45 Total: 2.34 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 5.94 Total: 23.26 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -7.15 Total: -115.56 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.29 Total: -27.01 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -71.79 -0.01 -71.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971742358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.063 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds