Wall clock time and date at job start Tue Mar 31 2020 03:06:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35670 * 117.00170 * 2 1
4 4 C 1.39482 * 120.01346 * 179.97438 * 3 2 1
5 5 N 1.31953 * 120.11402 * 179.97438 * 4 3 2
6 6 C 1.32197 * 120.14510 * 0.02911 * 5 4 3
7 7 C 1.39239 * 120.01782 * 359.97222 * 6 5 4
8 8 C 1.48124 * 120.05505 * 180.02562 * 7 6 5
9 9 O 1.21522 * 120.00231 * 359.97438 * 8 7 6
10 10 N 1.34778 * 120.00228 * 179.97438 * 8 7 6
11 11 C 1.46501 * 120.00102 * 179.97438 * 10 8 7
12 12 H 1.08996 * 110.88655 * 31.12111 * 11 10 8
13 13 C 1.55160 * 111.00374 * 155.00258 * 11 10 8
14 14 C 1.54330 * 102.94295 * 82.57227 * 13 11 10
15 15 N 1.47022 * 107.27028 * 22.19363 * 14 13 11
16 16 C 1.36932 * 125.64931 * 181.02631 * 15 14 13
17 17 H 1.08000 * 120.00004 * 189.81967 * 16 15 14
18 18 C 1.38810 * 120.00208 * 9.81570 * 16 15 14
19 19 N 1.31614 * 120.00304 * 208.94358 * 18 16 15
20 20 Si 1.86797 * 119.99812 * 28.94072 * 18 16 15
21 21 H 1.48500 * 109.47188 * 275.30203 * 20 18 16
22 22 H 1.48498 * 109.47428 * 35.30102 * 20 18 16
23 23 H 1.48503 * 109.47312 * 155.30587 * 20 18 16
24 24 C 1.47427 * 108.70226 * 1.28562 * 15 14 13
25 25 N 1.32168 * 120.00588 * 0.27836 * 3 2 1
26 26 H 1.09000 * 109.47193 * 180.02562 * 1 2 3
27 27 H 1.08999 * 109.47057 * 300.00038 * 1 2 3
28 28 H 1.09000 * 109.47273 * 59.99854 * 1 2 3
29 29 H 1.07996 * 119.94501 * 0.02562 * 4 3 2
30 30 H 1.08000 * 119.98957 * 180.02562 * 6 5 4
31 31 H 0.97000 * 119.99615 * 0.02562 * 10 8 7
32 32 H 1.08997 * 110.71705 * 324.21452 * 13 11 10
33 33 H 1.08994 * 110.87198 * 201.00707 * 13 11 10
34 34 H 1.09005 * 109.88315 * 262.78055 * 14 13 11
35 35 H 1.08998 * 110.01091 * 141.67921 * 14 13 11
36 36 H 0.97003 * 119.99936 * 4.81989 * 19 18 16
37 37 H 1.09003 * 110.36699 * 94.48441 * 24 15 14
38 38 H 1.09010 * 110.36605 * 216.80488 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2088 0.0000
4 6 3.4378 1.2821 0.0005
5 7 4.0390 2.4567 0.0000
6 6 3.3238 3.5685 -0.0004
7 6 1.9330 3.5021 -0.0009
8 6 1.1308 4.7473 -0.0020
9 8 1.6864 5.8281 -0.0020
10 7 -0.2154 4.6818 -0.0030
11 6 -1.0088 5.9134 -0.0035
12 1 -0.4859 6.7122 -0.5294
13 6 -2.4131 5.6700 -0.6167
14 6 -3.2116 5.0875 0.5686
15 7 -2.5315 5.5088 1.8021
16 6 -2.9139 5.1822 3.0757
17 1 -2.4471 5.6665 3.9207
18 6 -3.9017 4.2287 3.2809
19 7 -4.6663 4.2928 4.3502
20 14 -4.1457 2.8547 2.0392
21 1 -5.0238 3.3307 0.9403
22 1 -2.8297 2.4516 1.4818
23 1 -4.7778 1.6893 2.7082
24 6 -1.3732 6.3463 1.4409
25 7 1.3253 2.3174 0.0056
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5139 -0.8900
29 1 4.0253 0.3759 0.0005
30 1 3.8184 4.5286 -0.0012
31 1 -0.6589 3.8191 -0.0027
32 1 -2.3576 4.9515 -1.4344
33 1 -2.8558 6.6061 -0.9570
34 1 -3.2264 3.9994 0.5066
35 1 -4.2310 5.4734 0.5571
36 1 -4.5871 5.0440 4.9588
37 1 -1.6455 7.4014 1.4659
38 1 -0.5397 6.1526 2.1162
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001015797419.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:06:46
Heat of formation + Delta-G solvation = 16.381063 kcal
Electronic energy + Delta-G solvation = -23647.561812 eV
Core-core repulsion = 20106.149933 eV
Total energy + Delta-G solvation = -3541.411879 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.65518 -39.72005 -38.58059 -37.55574 -34.64952 -33.81433 -32.13987 -31.38443
-29.55701 -28.19702 -27.76708 -25.62014 -24.10279 -23.76428 -21.61519 -20.81189
-19.91449 -18.82176 -18.51212 -17.48552 -17.07122 -16.65356 -16.55208 -16.11459
-15.33459 -15.01347 -14.80467 -14.41363 -14.16574 -13.98742 -13.36925 -13.28069
-12.94143 -12.63115 -12.33626 -11.89233 -11.82698 -11.80845 -11.23336 -11.21854
-11.12383 -11.08488 -10.95581 -10.50593 -10.34542 -9.68749 -9.47537 -9.23503
-9.10177 -8.90262 -8.47846 -7.11001 -6.40438 -3.20734 0.14988 0.79620
2.60900 2.62362 2.99046 3.35636 3.42374 3.55478 3.62535 3.66050
3.98875 4.16386 4.57645 4.77780 4.87503 4.89361 4.97228 5.06177
5.11209 5.16431 5.25276 5.36581 5.47627 5.48511 5.74628 5.76720
5.99218 6.06588 6.17124 6.43575 6.49932 6.63521 6.69193 6.74657
6.80804 7.30042 7.58224 7.68276 8.15064 8.30660 8.98728 9.54228
10.21077 11.08854
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.015299 B = 0.005724 C = 0.004678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1829.730102 B = 4890.893488 C = 5983.603019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.298 6.298
3 C 0.277 3.723
4 C 0.064 3.936
5 N -0.406 5.406
6 C 0.063 3.937
7 C 0.081 3.919
8 C 0.573 3.427
9 O -0.530 6.530
10 N -0.683 5.683
11 C 0.122 3.878
12 H 0.101 0.899
13 C -0.136 4.136
14 C 0.116 3.884
15 N -0.607 5.607
16 C -0.330 4.330
17 H 0.077 0.923
18 C -0.014 4.014
19 N -0.913 5.913
20 Si 1.055 2.945
21 H -0.294 1.294
22 H -0.295 1.295
23 H -0.300 1.300
24 C 0.125 3.875
25 N -0.472 5.472
26 H 0.104 0.896
27 H 0.068 0.932
28 H 0.062 0.938
29 H 0.182 0.818
30 H 0.187 0.813
31 H 0.411 0.589
32 H 0.073 0.927
33 H 0.086 0.914
34 H 0.024 0.976
35 H 0.043 0.957
36 H 0.265 0.735
37 H 0.039 0.961
38 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.166 -5.848 -13.129 18.830
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.202 6.202
3 C 0.092 3.908
4 C -0.101 4.101
5 N -0.119 5.119
6 C -0.095 4.095
7 C -0.059 4.059
8 C 0.356 3.644
9 O -0.407 6.407
10 N -0.333 5.333
11 C 0.016 3.984
12 H 0.119 0.881
13 C -0.175 4.175
14 C -0.009 4.009
15 N -0.334 5.334
16 C -0.456 4.456
17 H 0.095 0.905
18 C -0.215 4.215
19 N -0.552 5.552
20 Si 0.888 3.112
21 H -0.222 1.222
22 H -0.223 1.223
23 H -0.228 1.228
24 C -0.002 4.002
25 N -0.205 5.205
26 H 0.122 0.878
27 H 0.086 0.914
28 H 0.081 0.919
29 H 0.199 0.801
30 H 0.204 0.796
31 H 0.247 0.753
32 H 0.092 0.908
33 H 0.105 0.895
34 H 0.041 0.959
35 H 0.061 0.939
36 H 0.075 0.925
37 H 0.056 0.944
38 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 11.712 -6.685 -13.297 18.939
hybrid contribution 0.259 0.884 0.392 1.001
sum 11.971 -5.802 -12.905 18.534
Atomic orbital electron populations
1.23074 0.76092 1.03902 1.03329 1.86268 1.23751 1.22995 1.87235
1.20983 0.91064 0.85446 0.93334 1.23214 0.89638 0.97863 0.99396
1.68628 1.37983 0.97655 1.07680 1.23632 0.90602 0.98615 0.96622
1.22018 0.93506 0.91519 0.98845 1.17577 0.82529 0.86792 0.77473
1.90794 1.71369 1.27852 1.50676 1.45724 1.05142 1.10937 1.71455
1.22359 0.90954 0.86376 0.98677 0.88115 1.22908 0.94435 1.02171
0.97974 1.21651 0.96257 0.96834 0.86145 1.44808 1.27907 1.58971
1.01764 1.20007 1.21180 1.22641 0.81821 0.90525 1.25739 0.93789
1.00710 1.01295 1.70878 1.34276 1.34469 1.15605 0.83945 0.74915
0.77541 0.74785 1.22204 1.22284 1.22767 1.22072 0.90811 0.94809
0.92503 1.68008 1.40131 0.98194 1.14203 0.87787 0.91356 0.91878
0.80055 0.79634 0.75293 0.90846 0.89527 0.95853 0.93915 0.92540
0.94353 0.93344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 10.39 101.05 1.05 1.37 16
2 O -0.30 -3.35 10.49 -18.71 -0.20 -3.54 16
3 C 0.28 3.39 7.50 -16.94 -0.13 3.26 16
4 C 0.06 0.68 11.18 -17.04 -0.19 0.49 16
5 N -0.41 -4.83 10.48 -12.59 -0.13 -4.96 16
6 C 0.06 0.80 10.76 -17.02 -0.18 0.61 16
7 C 0.08 1.16 6.75 -82.86 -0.56 0.60 16
8 C 0.57 9.16 7.81 -12.20 -0.10 9.07 16
9 O -0.53 -9.30 15.98 5.35 0.09 -9.22 16
10 N -0.68 -11.10 5.19 -52.47 -0.27 -11.37 16
11 C 0.12 1.99 3.43 -65.66 -0.23 1.77 16
12 H 0.10 1.52 7.54 -51.93 -0.39 1.13 16
13 C -0.14 -2.09 6.55 -24.89 -0.16 -2.26 16
14 C 0.12 2.40 4.99 -3.06 -0.02 2.38 16
15 N -0.61 -14.47 3.29 -169.92 -0.56 -15.03 16
16 C -0.33 -9.33 10.41 -15.06 -0.16 -9.49 16
17 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16
18 C -0.01 -0.41 5.41 -17.43 -0.09 -0.51 16
19 N -0.91 -28.24 13.70 55.49 0.76 -27.47 16
20 Si 1.05 25.80 24.74 -169.99 -4.21 21.59 16
21 H -0.29 -6.77 6.74 56.52 0.38 -6.39 16
22 H -0.29 -6.69 6.87 56.52 0.39 -6.30 16
23 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16
24 C 0.12 2.52 6.95 -2.41 -0.02 2.50 16
25 N -0.47 -6.61 8.60 -9.69 -0.08 -6.69 16
26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
27 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16
28 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16
29 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16
30 H 0.19 2.09 7.64 -52.49 -0.40 1.69 16
31 H 0.41 6.74 8.02 -40.82 -0.33 6.42 16
32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16
34 H 0.02 0.51 3.71 -51.93 -0.19 0.32 16
35 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16
36 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16
37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16
LS Contribution 321.97 15.07 4.85 4.85
Total: -1.00 -32.80 321.97 -5.24 -38.04
By element:
Atomic # 1 Polarization: 8.74 SS G_CDS: -4.72 Total: 4.02 kcal
Atomic # 6 Polarization: 10.56 SS G_CDS: -0.78 Total: 9.79 kcal
Atomic # 7 Polarization: -65.25 SS G_CDS: -0.29 Total: -65.53 kcal
Atomic # 8 Polarization: -12.65 SS G_CDS: -0.11 Total: -12.76 kcal
Atomic # 14 Polarization: 25.80 SS G_CDS: -4.21 Total: 21.59 kcal
Total LS contribution 4.85 Total: 4.85 kcal
Total: -32.80 -5.24 -38.04 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001015797419.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.422 kcal
(2) G-P(sol) polarization free energy of solvation -32.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.622 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds