Wall clock time and date at job start Tue Mar 31 2020 03:06:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35670 * 117.00170 * 2 1
4 4 C 1.39482 * 120.01346 * 179.97438 * 3 2 1
5 5 N 1.31953 * 120.11402 * 179.97438 * 4 3 2
6 6 C 1.32197 * 120.14510 * 0.02911 * 5 4 3
7 7 C 1.39239 * 120.01782 * 359.97222 * 6 5 4
8 8 C 1.48124 * 120.05505 * 180.02562 * 7 6 5
9 9 O 1.21522 * 120.00231 * 359.97438 * 8 7 6
10 10 N 1.34778 * 120.00228 * 179.97438 * 8 7 6
11 11 C 1.46501 * 120.00102 * 179.97438 * 10 8 7
12 12 H 1.08996 * 110.88655 * 31.12111 * 11 10 8
13 13 C 1.55160 * 111.00374 * 155.00258 * 11 10 8
14 14 C 1.54330 * 102.94295 * 82.57227 * 13 11 10
15 15 N 1.47022 * 107.27028 * 22.19363 * 14 13 11
16 16 C 1.36932 * 125.64931 * 181.02631 * 15 14 13
17 17 H 1.08000 * 120.00004 * 189.81967 * 16 15 14
18 18 C 1.38810 * 120.00208 * 9.81570 * 16 15 14
19 19 N 1.31614 * 120.00304 * 208.94358 * 18 16 15
20 20 Si 1.86797 * 119.99812 * 28.94072 * 18 16 15
21 21 H 1.48500 * 109.47188 * 275.30203 * 20 18 16
22 22 H 1.48498 * 109.47428 * 35.30102 * 20 18 16
23 23 H 1.48503 * 109.47312 * 155.30587 * 20 18 16
24 24 C 1.47427 * 108.70226 * 1.28562 * 15 14 13
25 25 N 1.32168 * 120.00588 * 0.27836 * 3 2 1
26 26 H 1.09000 * 109.47193 * 180.02562 * 1 2 3
27 27 H 1.08999 * 109.47057 * 300.00038 * 1 2 3
28 28 H 1.09000 * 109.47273 * 59.99854 * 1 2 3
29 29 H 1.07996 * 119.94501 * 0.02562 * 4 3 2
30 30 H 1.08000 * 119.98957 * 180.02562 * 6 5 4
31 31 H 0.97000 * 119.99615 * 0.02562 * 10 8 7
32 32 H 1.08997 * 110.71705 * 324.21452 * 13 11 10
33 33 H 1.08994 * 110.87198 * 201.00707 * 13 11 10
34 34 H 1.09005 * 109.88315 * 262.78055 * 14 13 11
35 35 H 1.08998 * 110.01091 * 141.67921 * 14 13 11
36 36 H 0.97003 * 119.99936 * 4.81989 * 19 18 16
37 37 H 1.09003 * 110.36699 * 94.48441 * 24 15 14
38 38 H 1.09010 * 110.36605 * 216.80488 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2088 0.0000
4 6 3.4378 1.2821 0.0005
5 7 4.0390 2.4567 0.0000
6 6 3.3238 3.5685 -0.0004
7 6 1.9330 3.5021 -0.0009
8 6 1.1308 4.7473 -0.0020
9 8 1.6864 5.8281 -0.0020
10 7 -0.2154 4.6818 -0.0030
11 6 -1.0088 5.9134 -0.0035
12 1 -0.4859 6.7122 -0.5294
13 6 -2.4131 5.6700 -0.6167
14 6 -3.2116 5.0875 0.5686
15 7 -2.5315 5.5088 1.8021
16 6 -2.9139 5.1822 3.0757
17 1 -2.4471 5.6665 3.9207
18 6 -3.9017 4.2287 3.2809
19 7 -4.6663 4.2928 4.3502
20 14 -4.1457 2.8547 2.0392
21 1 -5.0238 3.3307 0.9403
22 1 -2.8297 2.4516 1.4818
23 1 -4.7778 1.6893 2.7082
24 6 -1.3732 6.3463 1.4409
25 7 1.3253 2.3174 0.0056
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5139 -0.8900
29 1 4.0253 0.3759 0.0005
30 1 3.8184 4.5286 -0.0012
31 1 -0.6589 3.8191 -0.0027
32 1 -2.3576 4.9515 -1.4344
33 1 -2.8558 6.6061 -0.9570
34 1 -3.2264 3.9994 0.5066
35 1 -4.2310 5.4734 0.5571
36 1 -4.5871 5.0440 4.9588
37 1 -1.6455 7.4014 1.4659
38 1 -0.5397 6.1526 2.1162
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001015797419.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:06:45
Heat of formation + Delta-G solvation = -11.332996 kcal
Electronic energy + Delta-G solvation = -23648.763584 eV
Core-core repulsion = 20106.149933 eV
Total energy + Delta-G solvation = -3542.613651 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.61739 -40.96301 -39.56017 -38.97885 -35.81122 -35.29977 -33.95804 -32.37603
-31.21757 -29.69644 -28.66230 -26.75238 -25.71757 -24.87089 -22.81888 -22.52105
-21.38695 -19.97379 -19.48139 -19.41487 -17.94419 -17.76009 -17.50748 -17.43803
-17.00554 -16.25645 -15.99503 -15.70818 -15.51130 -15.29509 -14.99958 -14.68050
-14.15993 -14.09459 -13.43051 -13.21285 -13.08232 -12.85925 -12.78359 -12.71374
-12.61952 -12.39487 -12.12303 -11.98471 -11.76677 -11.62541 -11.15267 -10.62645
-10.49418 -10.30787 -9.93075 -9.11659 -8.71049 -5.42196 -0.82204 -0.14724
1.37706 1.48680 1.49980 1.70154 1.75117 1.85046 2.53946 2.54547
2.65799 2.97606 3.08077 3.25679 3.35674 3.57495 3.75594 3.82378
3.96350 4.14073 4.29196 4.33318 4.35124 4.37206 4.56298 4.71670
4.72685 4.83993 4.86570 4.89655 4.92682 5.14810 5.38582 5.56228
5.77437 5.85599 6.07996 6.26027 6.47253 6.80381 6.91859 7.45131
8.10743 8.80037
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.015299 B = 0.005724 C = 0.004678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1829.730102 B = 4890.893488 C = 5983.603019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.295 6.295
3 C 0.267 3.733
4 C 0.085 3.915
5 N -0.413 5.413
6 C 0.068 3.932
7 C 0.059 3.941
8 C 0.575 3.425
9 O -0.551 6.551
10 N -0.686 5.686
11 C 0.134 3.866
12 H 0.122 0.878
13 C -0.118 4.118
14 C 0.105 3.895
15 N -0.624 5.624
16 C -0.324 4.324
17 H 0.037 0.963
18 C -0.071 4.071
19 N -0.949 5.949
20 Si 1.101 2.899
21 H -0.267 1.267
22 H -0.269 1.269
23 H -0.309 1.309
24 C 0.120 3.880
25 N -0.487 5.487
26 H 0.134 0.866
27 H 0.046 0.954
28 H 0.065 0.935
29 H 0.220 0.780
30 H 0.194 0.806
31 H 0.411 0.589
32 H 0.107 0.893
33 H 0.113 0.887
34 H 0.024 0.976
35 H 0.032 0.968
36 H 0.249 0.751
37 H 0.045 0.955
38 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.250 -7.358 -16.221 22.200
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.199 6.199
3 C 0.081 3.919
4 C -0.081 4.081
5 N -0.127 5.127
6 C -0.089 4.089
7 C -0.079 4.079
8 C 0.359 3.641
9 O -0.429 6.429
10 N -0.335 5.335
11 C 0.028 3.972
12 H 0.139 0.861
13 C -0.156 4.156
14 C -0.019 4.019
15 N -0.352 5.352
16 C -0.452 4.452
17 H 0.055 0.945
18 C -0.265 4.265
19 N -0.591 5.591
20 Si 0.928 3.072
21 H -0.193 1.193
22 H -0.195 1.195
23 H -0.238 1.238
24 C -0.006 4.006
25 N -0.221 5.221
26 H 0.152 0.848
27 H 0.065 0.935
28 H 0.084 0.916
29 H 0.237 0.763
30 H 0.211 0.789
31 H 0.247 0.753
32 H 0.125 0.875
33 H 0.131 0.869
34 H 0.041 0.959
35 H 0.050 0.950
36 H 0.058 0.942
37 H 0.063 0.937
38 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges 12.826 -8.150 -16.429 22.379
hybrid contribution 0.017 1.365 1.443 1.986
sum 12.843 -6.785 -14.986 20.870
Atomic orbital electron populations
1.23219 0.75531 1.05606 1.02351 1.86284 1.24282 1.22303 1.87079
1.21278 0.91785 0.85314 0.93477 1.23851 0.89346 0.98624 0.96299
1.68736 1.37809 0.97883 1.08270 1.23760 0.90084 0.99379 0.95685
1.21758 0.93770 0.91021 1.01398 1.17822 0.82471 0.87235 0.76532
1.90773 1.71699 1.28834 1.51602 1.45750 1.05339 1.10793 1.71628
1.22254 0.92066 0.87107 0.95729 0.86076 1.22910 0.92185 1.04099
0.96406 1.21859 0.96416 0.97000 0.86595 1.44822 1.29679 1.59374
1.01344 1.19839 1.20361 1.21784 0.83243 0.94541 1.27074 0.93788
1.02998 1.02683 1.70998 1.36552 1.34535 1.17064 0.83372 0.76534
0.73977 0.73315 1.19335 1.19472 1.23764 1.22197 0.88908 0.94629
0.94873 1.67895 1.40952 0.98567 1.14649 0.84838 0.93526 0.91582
0.76347 0.78871 0.75307 0.87487 0.86878 0.95898 0.94996 0.94248
0.93696 0.95851
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.50 10.39 113.37 1.18 1.68 16
2 O -0.30 -5.85 10.49 -89.87 -0.94 -6.79 16
3 C 0.27 5.92 7.50 84.94 0.64 6.55 16
4 C 0.08 1.54 11.18 84.97 0.95 2.49 16
5 N -0.41 -8.86 10.48 -193.73 -2.03 -10.89 16
6 C 0.07 1.61 10.76 84.88 0.91 2.52 16
7 C 0.06 1.61 6.75 41.81 0.28 1.89 16
8 C 0.58 17.72 7.81 86.87 0.68 18.40 16
9 O -0.55 -18.81 15.98 -3.79 -0.06 -18.87 16
10 N -0.69 -21.02 5.19 -438.19 -2.27 -23.30 16
11 C 0.13 4.06 3.43 46.46 0.16 4.22 16
12 H 0.12 3.28 7.54 -2.39 -0.02 3.26 16
13 C -0.12 -3.16 6.55 31.79 0.21 -2.95 16
14 C 0.11 4.11 4.99 86.73 0.43 4.55 16
15 N -0.62 -29.72 3.29 -691.52 -2.27 -31.99 16
16 C -0.32 -18.94 10.41 84.03 0.87 -18.07 16
17 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16
18 C -0.07 -4.20 5.41 84.86 0.46 -3.74 16
19 N -0.95 -60.90 13.70 21.65 0.30 -60.60 16
20 Si 1.10 51.78 24.74 68.60 1.70 53.47 16
21 H -0.27 -11.34 6.74 99.48 0.67 -10.67 16
22 H -0.27 -11.32 6.87 99.48 0.68 -10.64 16
23 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16
24 C 0.12 4.81 6.95 86.93 0.60 5.41 16
25 N -0.49 -12.83 8.60 -297.48 -2.56 -15.39 16
26 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16
27 H 0.05 1.05 8.11 -2.39 -0.02 1.03 16
28 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16
29 H 0.22 2.18 8.06 -2.91 -0.02 2.16 16
30 H 0.19 4.13 7.64 -2.91 -0.02 4.11 16
31 H 0.41 12.61 8.02 -92.71 -0.74 11.86 16
32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16
33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16
34 H 0.02 0.93 3.71 -2.38 -0.01 0.92 16
35 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16
36 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16
37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
38 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16
Total: -1.00 -74.03 321.97 -0.51 -74.54
By element:
Atomic # 1 Polarization: 16.62 SS G_CDS: 0.26 Total: 16.88 kcal
Atomic # 6 Polarization: 15.56 SS G_CDS: 7.38 Total: 22.94 kcal
Atomic # 7 Polarization: -133.33 SS G_CDS: -8.84 Total: -142.17 kcal
Atomic # 8 Polarization: -24.66 SS G_CDS: -1.00 Total: -25.66 kcal
Atomic # 14 Polarization: 51.78 SS G_CDS: 1.70 Total: 53.47 kcal
Total: -74.03 -0.51 -74.54 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001015797419.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.211 kcal
(2) G-P(sol) polarization free energy of solvation -74.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.822 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds