Wall clock time and date at job start Tue Mar 31 2020 03:07:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35292 * 117.00443 * 2 1
4 4 N 1.32468 * 119.01939 * 180.02562 * 3 2 1
5 5 C 1.32020 * 120.90988 * 179.97438 * 4 3 2
6 6 C 1.40061 * 118.99303 * 0.02562 * 5 4 3
7 7 C 1.47619 * 120.88564 * 179.97438 * 6 5 4
8 8 O 1.21588 * 119.99910 * 359.97438 * 7 6 5
9 9 N 1.34770 * 120.00050 * 179.97438 * 7 6 5
10 10 C 1.46501 * 119.99940 * 179.97438 * 9 7 6
11 11 H 1.08996 * 110.64402 * 328.14044 * 10 9 7
12 12 C 1.55157 * 110.71889 * 205.00370 * 10 9 7
13 13 C 1.54918 * 101.58155 * 276.95791 * 12 10 9
14 14 N 1.47425 * 104.82827 * 322.99497 * 13 12 10
15 15 C 1.36938 * 125.64463 * 204.10316 * 14 13 12
16 16 H 1.07998 * 120.00330 * 180.02562 * 15 14 13
17 17 C 1.38823 * 119.99891 * 0.02562 * 15 14 13
18 18 N 1.31612 * 119.99977 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 119.99878 * 179.97438 * 17 15 14
20 20 H 1.48496 * 109.46992 * 90.00183 * 19 17 15
21 21 H 1.48496 * 109.47342 * 210.00219 * 19 17 15
22 22 H 1.48505 * 109.47142 * 330.00473 * 19 17 15
23 23 C 1.47015 * 108.70882 * 24.12597 * 14 13 12
24 24 C 1.40058 * 118.22812 * 0.24667 * 6 5 4
25 25 N 1.32012 * 118.99244 * 359.47152 * 24 6 5
26 26 H 1.09002 * 109.47612 * 180.02562 * 1 2 3
27 27 H 1.09006 * 109.46732 * 300.00444 * 1 2 3
28 28 H 1.08997 * 109.47384 * 59.99909 * 1 2 3
29 29 H 1.08003 * 120.50412 * 180.02562 * 5 4 3
30 30 H 0.97003 * 120.00189 * 0.02562 * 9 7 6
31 31 H 1.09001 * 111.00846 * 35.03499 * 12 10 9
32 32 H 1.09000 * 111.00346 * 158.89031 * 12 10 9
33 33 H 1.08999 * 110.35942 * 81.82689 * 13 12 10
34 34 H 1.08996 * 110.36556 * 204.15522 * 13 12 10
35 35 H 0.96999 * 120.00060 * 179.97438 * 18 17 15
36 36 H 1.09000 * 109.88350 * 239.52260 * 23 14 13
37 37 H 1.08998 * 109.88602 * 118.35926 * 23 14 13
38 38 H 1.07998 * 120.50425 * 179.75161 * 24 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0433 1.2054 0.0000
4 7 3.3671 1.2520 -0.0005
5 6 4.0050 2.4078 -0.0010
6 6 3.2605 3.5942 -0.0005
7 6 3.9307 4.9094 -0.0005
8 8 5.1450 4.9730 -0.0005
9 7 3.1968 6.0397 -0.0005
10 6 3.8620 7.3450 0.0001
11 1 4.8081 7.2939 0.5388
12 6 2.9391 8.4311 0.6134
13 6 2.0567 8.8118 -0.6016
14 7 2.9658 8.7543 -1.7609
15 6 2.7987 9.4297 -2.9403
16 1 3.5240 9.3200 -3.7329
17 6 1.6969 10.2556 -3.1172
18 7 0.8127 10.3889 -2.1515
19 14 1.4694 11.1776 -4.7258
20 1 0.6826 10.3421 -5.6681
21 1 0.7466 12.4491 -4.4696
22 1 2.7984 11.4743 -5.3185
23 6 4.0810 7.8512 -1.4412
24 6 1.8632 3.4993 0.0059
25 7 1.3030 2.3040 0.0005
26 1 -0.3634 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 5.0847 2.4382 -0.0019
30 1 2.2281 5.9891 -0.0001
31 1 2.3346 8.0194 1.4216
32 1 3.5190 9.2871 0.9585
33 1 1.2448 8.0944 -0.7203
34 1 1.6593 9.8195 -0.4809
35 1 0.0431 10.9662 -2.2749
36 1 5.0255 8.3915 -1.5049
37 1 4.0860 7.0090 -2.1331
38 1 1.2532 4.3905 0.0106
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001015940769.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:50
Heat of formation + Delta-G solvation = 18.924574 kcal
Electronic energy + Delta-G solvation = -22854.389816 eV
Core-core repulsion = 19313.088232 eV
Total energy + Delta-G solvation = -3541.301584 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.62950 -39.73152 -38.49149 -37.23460 -34.46948 -33.80181 -32.34185 -31.36667
-29.22347 -28.07553 -27.22587 -25.04889 -24.79705 -24.15513 -21.30562 -20.26707
-20.01199 -19.14554 -18.34785 -17.80053 -16.84439 -16.76683 -15.93701 -15.33911
-14.99735 -14.85411 -14.70862 -14.45634 -14.06215 -13.81663 -13.69284 -13.24421
-12.62857 -12.36324 -12.11171 -12.04788 -11.68236 -11.65414 -11.27872 -11.13657
-10.92984 -10.85838 -10.49096 -10.16203 -9.96769 -9.86159 -9.63641 -9.56734
-9.38961 -8.85568 -8.67728 -6.89858 -5.71550 -3.12560 0.29068 0.71304
2.19495 2.79080 3.17776 3.37093 3.42735 3.44277 3.58382 3.62134
4.16132 4.33591 4.45036 4.57312 4.78600 4.87741 4.92988 5.19459
5.26897 5.36271 5.38838 5.43707 5.67832 5.71807 5.79293 6.16718
6.26917 6.30546 6.42400 6.44746 6.65648 6.71872 6.93153 7.34897
7.55254 7.59715 7.67767 7.76997 8.22828 8.29767 9.16616 9.77185
10.40868 11.32739
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.020132 B = 0.003508 C = 0.003230
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1390.510742 B = 7978.936949 C = 8667.800496
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 O -0.286 6.286
3 C 0.512 3.488
4 N -0.527 5.527
5 C 0.248 3.752
6 C -0.277 4.277
7 C 0.573 3.427
8 O -0.538 6.538
9 N -0.702 5.702
10 C 0.130 3.870
11 H 0.094 0.906
12 C -0.154 4.154
13 C 0.150 3.850
14 N -0.603 5.603
15 C -0.221 4.221
16 H 0.077 0.923
17 C -0.011 4.011
18 N -0.924 5.924
19 Si 0.915 3.085
20 H -0.289 1.289
21 H -0.290 1.290
22 H -0.281 1.281
23 C 0.127 3.873
24 C 0.226 3.774
25 N -0.568 5.568
26 H 0.105 0.895
27 H 0.066 0.934
28 H 0.066 0.934
29 H 0.192 0.808
30 H 0.399 0.601
31 H 0.065 0.935
32 H 0.077 0.923
33 H 0.010 0.990
34 H 0.109 0.891
35 H 0.252 0.748
36 H 0.034 0.966
37 H 0.026 0.974
38 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.637 -15.436 7.878 17.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.186 6.186
3 C 0.211 3.789
4 N -0.252 5.252
5 C 0.081 3.919
6 C -0.286 4.286
7 C 0.358 3.642
8 O -0.416 6.416
9 N -0.353 5.353
10 C 0.026 3.974
11 H 0.112 0.888
12 C -0.193 4.193
13 C 0.025 3.975
14 N -0.330 5.330
15 C -0.350 4.350
16 H 0.095 0.905
17 C -0.206 4.206
18 N -0.573 5.573
19 Si 0.745 3.255
20 H -0.217 1.217
21 H -0.216 1.216
22 H -0.207 1.207
23 C 0.000 4.000
24 C 0.059 3.941
25 N -0.298 5.298
26 H 0.124 0.876
27 H 0.084 0.916
28 H 0.085 0.915
29 H 0.208 0.792
30 H 0.234 0.766
31 H 0.083 0.917
32 H 0.096 0.904
33 H 0.028 0.972
34 H 0.127 0.873
35 H 0.063 0.937
36 H 0.051 0.949
37 H 0.044 0.956
38 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges -0.355 -16.474 7.767 18.216
hybrid contribution -0.593 1.301 -0.951 1.717
sum -0.948 -15.172 6.816 16.660
Atomic orbital electron populations
1.23079 0.75201 1.03812 1.03282 1.86066 1.23784 1.22621 1.86175
1.20990 0.86379 0.84908 0.86590 1.67745 1.07248 1.29955 1.20223
1.23393 1.01265 0.84174 0.83073 1.21679 0.96134 0.97033 1.13711
1.17552 0.86854 0.83056 0.76751 1.90787 1.13085 1.87204 1.50558
1.45885 1.10162 1.05639 1.73583 1.22073 0.96538 0.80932 0.97858
0.88836 1.23366 0.99098 0.97192 0.99637 1.21968 0.89907 1.03181
0.82403 1.44514 1.23261 1.51098 1.14128 1.19093 1.06038 1.19059
0.90777 0.90486 1.24766 0.97109 1.00419 0.98323 1.69765 1.13773
1.42395 1.31317 0.86067 0.77687 0.79128 0.82593 1.21677 1.21632
1.20673 1.21696 0.92414 0.93250 0.92672 1.23270 0.91536 0.94703
0.84602 1.68089 1.40993 0.99011 1.21660 0.87646 0.91568 0.91492
0.79164 0.76609 0.91650 0.90406 0.97196 0.87310 0.93729 0.94851
0.95584 0.80493
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.31 10.35 101.05 1.05 1.35 16
2 O -0.29 -3.27 10.55 -17.57 -0.19 -3.45 16
3 C 0.51 6.52 8.48 -90.99 -0.77 5.75 16
4 N -0.53 -6.92 10.45 -14.39 -0.15 -7.07 16
5 C 0.25 2.98 10.87 -16.79 -0.18 2.80 16
6 C -0.28 -3.40 5.90 -104.70 -0.62 -4.01 16
7 C 0.57 8.31 7.78 -12.44 -0.10 8.21 16
8 O -0.54 -9.31 16.08 5.29 0.09 -9.23 16
9 N -0.70 -10.11 5.06 -53.04 -0.27 -10.37 16
10 C 0.13 2.18 3.32 -66.09 -0.22 1.96 16
11 H 0.09 1.53 7.55 -51.93 -0.39 1.14 16
12 C -0.15 -2.59 6.67 -24.58 -0.16 -2.75 16
13 C 0.15 3.33 5.85 -2.52 -0.01 3.32 16
14 N -0.60 -14.77 3.39 -170.07 -0.58 -15.35 16
15 C -0.22 -6.03 10.27 -15.05 -0.15 -6.18 16
16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16
17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16
18 N -0.92 -25.86 10.09 55.49 0.56 -25.30 16
19 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16
20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16
21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
23 C 0.13 2.62 6.99 -3.07 -0.02 2.59 16
24 C 0.23 2.50 10.81 -16.79 -0.18 2.31 16
25 N -0.57 -6.75 9.19 -14.39 -0.13 -6.89 16
26 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16
27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16
28 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16
29 H 0.19 1.97 7.74 -52.48 -0.41 1.56 16
30 H 0.40 5.03 6.77 -40.82 -0.28 4.75 16
31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16
33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16
34 H 0.11 2.77 5.87 -51.93 -0.31 2.47 16
35 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16
36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16
38 H 0.18 1.53 6.53 -52.49 -0.34 1.19 16
LS Contribution 323.98 15.07 4.88 4.88
Total: -1.00 -32.30 323.98 -6.92 -39.22
By element:
Atomic # 1 Polarization: 6.60 SS G_CDS: -4.64 Total: 1.96 kcal
Atomic # 6 Polarization: 16.43 SS G_CDS: -1.47 Total: 14.96 kcal
Atomic # 7 Polarization: -64.41 SS G_CDS: -0.57 Total: -64.98 kcal
Atomic # 8 Polarization: -12.58 SS G_CDS: -0.10 Total: -12.68 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -32.30 -6.92 -39.22 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001015940769.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.146 kcal
(2) G-P(sol) polarization free energy of solvation -32.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds