Wall clock time and date at job start Tue Mar 31 2020 03:07:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35292 * 117.00443 * 2 1
4 4 N 1.32468 * 119.01939 * 180.02562 * 3 2 1
5 5 C 1.32020 * 120.90988 * 179.97438 * 4 3 2
6 6 C 1.40061 * 118.99303 * 0.02562 * 5 4 3
7 7 C 1.47619 * 120.88564 * 179.97438 * 6 5 4
8 8 O 1.21588 * 119.99910 * 359.97438 * 7 6 5
9 9 N 1.34770 * 120.00050 * 179.97438 * 7 6 5
10 10 C 1.46501 * 119.99940 * 179.97438 * 9 7 6
11 11 H 1.08996 * 110.64402 * 328.14044 * 10 9 7
12 12 C 1.55157 * 110.71889 * 205.00370 * 10 9 7
13 13 C 1.54918 * 101.58155 * 276.95791 * 12 10 9
14 14 N 1.47425 * 104.82827 * 322.99497 * 13 12 10
15 15 C 1.36938 * 125.64463 * 204.10316 * 14 13 12
16 16 H 1.07998 * 120.00330 * 180.02562 * 15 14 13
17 17 C 1.38823 * 119.99891 * 0.02562 * 15 14 13
18 18 N 1.31612 * 119.99977 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 119.99878 * 179.97438 * 17 15 14
20 20 H 1.48496 * 109.46992 * 90.00183 * 19 17 15
21 21 H 1.48496 * 109.47342 * 210.00219 * 19 17 15
22 22 H 1.48505 * 109.47142 * 330.00473 * 19 17 15
23 23 C 1.47015 * 108.70882 * 24.12597 * 14 13 12
24 24 C 1.40058 * 118.22812 * 0.24667 * 6 5 4
25 25 N 1.32012 * 118.99244 * 359.47152 * 24 6 5
26 26 H 1.09002 * 109.47612 * 180.02562 * 1 2 3
27 27 H 1.09006 * 109.46732 * 300.00444 * 1 2 3
28 28 H 1.08997 * 109.47384 * 59.99909 * 1 2 3
29 29 H 1.08003 * 120.50412 * 180.02562 * 5 4 3
30 30 H 0.97003 * 120.00189 * 0.02562 * 9 7 6
31 31 H 1.09001 * 111.00846 * 35.03499 * 12 10 9
32 32 H 1.09000 * 111.00346 * 158.89031 * 12 10 9
33 33 H 1.08999 * 110.35942 * 81.82689 * 13 12 10
34 34 H 1.08996 * 110.36556 * 204.15522 * 13 12 10
35 35 H 0.96999 * 120.00060 * 179.97438 * 18 17 15
36 36 H 1.09000 * 109.88350 * 239.52260 * 23 14 13
37 37 H 1.08998 * 109.88602 * 118.35926 * 23 14 13
38 38 H 1.07998 * 120.50425 * 179.75161 * 24 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0433 1.2054 0.0000
4 7 3.3671 1.2520 -0.0005
5 6 4.0050 2.4078 -0.0010
6 6 3.2605 3.5942 -0.0005
7 6 3.9307 4.9094 -0.0005
8 8 5.1450 4.9730 -0.0005
9 7 3.1968 6.0397 -0.0005
10 6 3.8620 7.3450 0.0001
11 1 4.8081 7.2939 0.5388
12 6 2.9391 8.4311 0.6134
13 6 2.0567 8.8118 -0.6016
14 7 2.9658 8.7543 -1.7609
15 6 2.7987 9.4297 -2.9403
16 1 3.5240 9.3200 -3.7329
17 6 1.6969 10.2556 -3.1172
18 7 0.8127 10.3889 -2.1515
19 14 1.4694 11.1776 -4.7258
20 1 0.6826 10.3421 -5.6681
21 1 0.7466 12.4491 -4.4696
22 1 2.7984 11.4743 -5.3185
23 6 4.0810 7.8512 -1.4412
24 6 1.8632 3.4993 0.0059
25 7 1.3030 2.3040 0.0005
26 1 -0.3634 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 5.0847 2.4382 -0.0019
30 1 2.2281 5.9891 -0.0001
31 1 2.3346 8.0194 1.4216
32 1 3.5190 9.2871 0.9585
33 1 1.2448 8.0944 -0.7203
34 1 1.6593 9.8195 -0.4809
35 1 0.0431 10.9662 -2.2749
36 1 5.0255 8.3915 -1.5049
37 1 4.0860 7.0090 -2.1331
38 1 1.2532 4.3905 0.0106
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001015940769.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:50
Heat of formation + Delta-G solvation = -6.507157 kcal
Electronic energy + Delta-G solvation = -22855.492619 eV
Core-core repulsion = 19313.088232 eV
Total energy + Delta-G solvation = -3542.404387 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.56160 -40.91328 -39.45603 -38.70419 -35.69460 -35.07180 -33.82060 -32.64594
-30.90151 -29.11855 -28.49239 -26.53803 -25.93286 -25.29334 -22.50908 -22.01064
-21.40067 -19.99630 -19.36091 -19.08023 -18.55334 -17.61022 -17.29789 -16.65806
-16.21583 -16.13608 -15.80543 -15.62609 -15.50382 -14.95507 -14.80791 -14.57446
-14.27500 -13.75896 -13.37260 -13.11319 -12.99641 -12.93988 -12.79150 -12.43852
-12.33231 -12.17762 -12.10053 -12.00248 -11.80553 -11.42450 -11.08981 -10.73257
-10.49825 -10.37480 -10.05819 -8.86288 -7.76517 -5.19340 -0.66834 -0.18233
1.39014 1.48596 1.48836 1.57784 1.69529 2.02579 2.50630 2.60624
2.75264 3.25912 3.33937 3.48630 3.59918 3.71706 3.79583 3.89852
4.09725 4.33251 4.35754 4.37036 4.50501 4.68417 4.70019 4.75442
4.86950 4.94376 5.01631 5.09524 5.42547 5.46610 5.54022 5.67109
5.84350 5.86104 6.34895 6.44649 6.75653 7.08438 7.14630 7.80228
8.42445 9.24608
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.020132 B = 0.003508 C = 0.003230
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1390.510742 B = 7978.936949 C = 8667.800496
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.298 6.298
3 C 0.506 3.494
4 N -0.546 5.546
5 C 0.251 3.749
6 C -0.283 4.283
7 C 0.580 3.420
8 O -0.567 6.567
9 N -0.697 5.697
10 C 0.146 3.854
11 H 0.105 0.895
12 C -0.133 4.133
13 C 0.151 3.849
14 N -0.623 5.623
15 C -0.240 4.240
16 H 0.073 0.927
17 C -0.059 4.059
18 N -0.942 5.942
19 Si 0.975 3.025
20 H -0.288 1.288
21 H -0.291 1.291
22 H -0.274 1.274
23 C 0.124 3.876
24 C 0.234 3.766
25 N -0.570 5.570
26 H 0.135 0.865
27 H 0.070 0.930
28 H 0.065 0.935
29 H 0.203 0.797
30 H 0.409 0.591
31 H 0.101 0.899
32 H 0.082 0.918
33 H 0.001 0.999
34 H 0.074 0.926
35 H 0.248 0.752
36 H 0.029 0.971
37 H 0.014 0.986
38 H 0.202 0.798
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.054 -16.231 8.485 18.346
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.198 6.198
3 C 0.205 3.795
4 N -0.271 5.271
5 C 0.084 3.916
6 C -0.292 4.292
7 C 0.366 3.634
8 O -0.447 6.447
9 N -0.348 5.348
10 C 0.041 3.959
11 H 0.123 0.877
12 C -0.172 4.172
13 C 0.027 3.973
14 N -0.349 5.349
15 C -0.369 4.369
16 H 0.090 0.910
17 C -0.252 4.252
18 N -0.592 5.592
19 Si 0.803 3.197
20 H -0.216 1.216
21 H -0.218 1.218
22 H -0.200 1.200
23 C -0.002 4.002
24 C 0.067 3.933
25 N -0.300 5.300
26 H 0.153 0.847
27 H 0.088 0.912
28 H 0.084 0.916
29 H 0.219 0.781
30 H 0.246 0.754
31 H 0.119 0.881
32 H 0.101 0.899
33 H 0.019 0.981
34 H 0.092 0.908
35 H 0.058 0.942
36 H 0.047 0.953
37 H 0.032 0.968
38 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges -0.786 -17.301 8.387 19.243
hybrid contribution -0.490 1.477 -1.160 1.941
sum -1.275 -15.824 7.227 17.443
Atomic orbital electron populations
1.23379 0.73198 1.05872 1.03394 1.86073 1.25786 1.22222 1.85746
1.21251 0.86528 0.85575 0.86146 1.67782 1.07763 1.30367 1.21232
1.23598 1.01863 0.83927 0.82180 1.21444 0.96609 0.95811 1.15299
1.17731 0.86423 0.83542 0.75664 1.90776 1.14415 1.87636 1.51889
1.45756 1.10685 1.04863 1.73498 1.21803 0.97289 0.81769 0.95052
0.87678 1.23198 0.98354 0.97462 0.98180 1.21806 0.90465 1.01077
0.83986 1.44768 1.24575 1.51502 1.14075 1.19372 1.06084 1.19519
0.91959 0.90956 1.25491 0.97103 1.01396 1.01236 1.69997 1.13874
1.42758 1.32571 0.85136 0.77619 0.77675 0.79228 1.21556 1.21750
1.19966 1.21806 0.91151 0.92206 0.95077 1.23645 0.91292 0.95269
0.83055 1.68182 1.40724 0.99021 1.22060 0.84705 0.91170 0.91576
0.78065 0.75421 0.88108 0.89938 0.98090 0.90753 0.94247 0.95288
0.96810 0.78130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.46 10.35 113.37 1.17 1.64 16
2 O -0.30 -6.41 10.55 -85.78 -0.90 -7.31 16
3 C 0.51 12.23 8.48 180.48 1.53 13.76 16
4 N -0.55 -13.80 10.45 -312.40 -3.26 -17.06 16
5 C 0.25 5.75 10.87 85.11 0.93 6.68 16
6 C -0.28 -6.48 5.90 -19.92 -0.12 -6.60 16
7 C 0.58 15.83 7.78 86.72 0.67 16.51 16
8 O -0.57 -18.89 16.08 -3.99 -0.06 -18.95 16
9 N -0.70 -18.60 5.06 -439.99 -2.22 -20.83 16
10 C 0.15 4.61 3.32 46.18 0.15 4.76 16
11 H 0.11 3.18 7.55 -2.39 -0.02 3.16 16
12 C -0.13 -4.18 6.67 31.99 0.21 -3.97 16
13 C 0.15 6.65 5.85 86.86 0.51 7.15 16
14 N -0.62 -30.56 3.39 -691.98 -2.35 -32.90 16
15 C -0.24 -13.20 10.27 84.04 0.86 -12.34 16
16 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16
17 C -0.06 -3.25 5.49 84.87 0.47 -2.78 16
18 N -0.94 -53.30 10.09 21.65 0.22 -53.08 16
19 Si 0.97 44.70 29.55 68.60 2.03 46.73 16
20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16
21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16
22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16
23 C 0.12 5.07 6.99 86.73 0.61 5.68 16
24 C 0.23 4.70 10.81 85.11 0.92 5.62 16
25 N -0.57 -12.56 9.19 -312.42 -2.87 -15.43 16
26 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16
27 H 0.07 0.85 8.09 -2.38 -0.02 0.83 16
28 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16
29 H 0.20 3.98 7.74 -2.91 -0.02 3.96 16
30 H 0.41 9.29 6.77 -92.71 -0.63 8.66 16
31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16
32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16
33 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
34 H 0.07 3.83 5.87 -2.39 -0.01 3.81 16
35 H 0.25 13.66 8.31 -92.71 -0.77 12.88 16
36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
37 H 0.01 0.60 8.05 -2.39 -0.02 0.58 16
38 H 0.20 2.92 6.53 -2.91 -0.02 2.90 16
Total: -1.00 -69.50 323.98 -1.04 -70.55
By element:
Atomic # 1 Polarization: 11.72 SS G_CDS: 0.47 Total: 12.19 kcal
Atomic # 6 Polarization: 28.19 SS G_CDS: 7.92 Total: 36.11 kcal
Atomic # 7 Polarization: -128.82 SS G_CDS: -10.49 Total: -139.31 kcal
Atomic # 8 Polarization: -25.29 SS G_CDS: -0.97 Total: -26.26 kcal
Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal
Total: -69.50 -1.04 -70.55 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001015940769.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.038 kcal
(2) G-P(sol) polarization free energy of solvation -69.502 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds