Wall clock time and date at job start Tue Mar 31 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47042 * 2 1 4 4 N 1.28386 * 119.10228 * 270.27454 * 3 2 1 5 5 C 1.31403 * 122.26815 * 180.29871 * 4 3 2 6 6 C 1.47883 * 119.89535 * 179.70234 * 5 4 3 7 7 O 1.21554 * 119.99778 * 179.73229 * 6 5 4 8 8 N 1.34777 * 120.00062 * 359.72626 * 6 5 4 9 9 C 1.46500 * 120.00034 * 179.97438 * 8 6 5 10 10 C 1.53495 * 114.20946 * 205.00198 * 9 8 6 11 11 N 1.47064 * 87.98647 * 220.14789 * 10 9 8 12 12 C 1.36929 * 136.05710 * 207.07951 * 11 10 9 13 13 H 1.08004 * 120.00104 * 6.50631 * 12 11 10 14 14 C 1.38818 * 120.00175 * 186.49548 * 12 11 10 15 15 N 1.31615 * 119.99847 * 6.43003 * 14 12 11 16 16 Si 1.86802 * 119.99925 * 186.42380 * 14 12 11 17 17 H 1.48502 * 109.46990 * 265.01960 * 16 14 12 18 18 H 1.48491 * 109.47236 * 25.02406 * 16 14 12 19 19 H 1.48506 * 109.46777 * 145.02360 * 16 14 12 20 20 C 1.47067 * 87.88549 * 27.33957 * 11 10 9 21 21 C 1.41584 * 120.20953 * 359.43009 * 5 4 3 22 22 C 1.36328 * 118.23772 * 0.27228 * 21 5 4 23 23 C 1.34613 * 119.10160 * 90.00273 * 3 2 1 24 24 O 1.21982 * 120.22108 * 359.97294 * 23 3 2 25 25 H 1.09001 * 109.47370 * 299.99853 * 1 2 3 26 26 H 1.09001 * 109.47149 * 59.99951 * 1 2 3 27 27 H 1.08994 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47370 * 240.00147 * 2 1 3 29 29 H 1.09001 * 109.47149 * 120.00049 * 2 1 3 30 30 H 0.96996 * 119.99967 * 359.97438 * 8 6 5 31 31 H 1.09008 * 113.28018 * 338.07062 * 9 8 6 32 32 H 1.08996 * 113.46596 * 105.36686 * 10 9 8 33 33 H 1.09006 * 113.46151 * 334.92878 * 10 9 8 34 34 H 0.97003 * 120.00226 * 179.97438 * 15 14 12 35 35 H 1.09005 * 113.46771 * 87.43754 * 20 11 10 36 36 H 1.09002 * 113.46911 * 217.87594 * 20 11 10 37 37 H 1.08003 * 120.87796 * 180.29439 * 21 5 4 38 38 H 1.08003 * 121.03081 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2214 1.9717 -1.1218 5 6 2.6638 3.2069 -1.1944 6 6 2.8855 3.8340 -2.5152 7 8 3.2901 4.9781 -2.5845 8 7 2.6391 3.1368 -3.6420 9 6 2.8582 3.7583 -4.9505 10 6 2.0169 3.1538 -6.0832 11 7 3.1970 3.2723 -6.9528 12 6 3.4215 3.4173 -8.2958 13 1 2.5910 3.5740 -8.9683 14 6 4.7164 3.3630 -8.7929 15 7 5.7147 3.0470 -7.9955 16 14 5.0421 3.7383 -10.5936 17 1 5.0705 2.4704 -11.3662 18 1 3.9646 4.6144 -11.1194 19 1 6.3503 4.4284 -10.7266 20 6 4.0300 3.1599 -5.7460 21 6 2.9235 3.9412 -0.0120 22 6 2.7074 3.3302 1.1873 23 6 2.2366 1.9984 1.1762 24 8 2.0287 1.4118 2.2253 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3166 2.2237 -3.5867 31 1 2.8463 4.8478 -4.9174 32 1 1.1851 3.7870 -6.3915 33 1 1.7162 2.1226 -5.8976 34 1 6.6196 3.0087 -8.3429 35 1 4.2599 2.1303 -5.4716 36 1 4.9132 3.7983 -5.7672 37 1 3.2828 4.9586 -0.0591 38 1 2.8902 3.8484 2.1171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031119824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:33 Heat of formation + Delta-G solvation = 35.521965 kcal Electronic energy + Delta-G solvation = -22732.149064 eV Core-core repulsion = 19191.567197 eV Total energy + Delta-G solvation = -3540.581867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.29228 -41.07234 -39.51753 -38.81014 -36.44058 -35.26795 -33.92486 -32.99011 -31.73601 -29.46808 -27.18924 -26.40660 -25.98359 -25.00711 -23.64553 -22.40094 -21.45324 -19.82987 -19.06034 -18.71677 -17.90161 -17.73523 -17.33312 -17.05608 -16.89622 -15.98094 -15.75640 -15.61554 -15.18094 -14.77743 -14.64173 -14.49730 -14.38396 -13.78623 -13.58815 -13.26522 -13.17252 -13.12195 -12.91881 -12.78383 -12.62267 -12.29648 -12.19942 -12.00204 -11.53524 -11.41245 -11.34037 -10.94428 -10.86450 -10.03643 -9.70663 -8.97548 -7.94033 -5.27289 -0.68103 -0.03135 0.97082 1.47757 1.49971 1.59428 1.64342 1.92764 2.39794 2.49190 2.76983 3.29810 3.42463 3.54970 3.65485 3.73146 3.79130 4.02655 4.02985 4.27589 4.31218 4.47986 4.51815 4.53200 4.75994 4.78635 4.85519 4.89957 4.92689 4.99753 5.10131 5.17074 5.19876 5.46454 5.65540 5.87784 6.29967 6.44927 6.81149 6.87607 7.07732 7.57578 8.55760 9.24868 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.003100 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.683349 B = 9029.084279 C = 9478.455894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.330 5.330 4 N -0.173 5.173 5 C 0.016 3.984 6 C 0.590 3.410 7 O -0.557 6.557 8 N -0.682 5.682 9 C 0.117 3.883 10 C 0.118 3.882 11 N -0.636 5.636 12 C -0.230 4.230 13 H 0.093 0.907 14 C -0.067 4.067 15 N -0.954 5.954 16 Si 0.982 3.018 17 H -0.285 1.285 18 H -0.264 1.264 19 H -0.296 1.296 20 C 0.150 3.850 21 C -0.025 4.025 22 C -0.188 4.188 23 C 0.471 3.529 24 O -0.557 6.557 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.418 0.582 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.249 0.751 35 H 0.027 0.973 36 H 0.025 0.975 37 H 0.179 0.821 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 -4.233 17.713 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.152 5.152 4 N -0.004 5.004 5 C -0.155 4.155 6 C 0.374 3.626 7 O -0.434 6.434 8 N -0.333 5.333 9 C 0.011 3.989 10 C -0.007 4.007 11 N -0.362 5.362 12 C -0.358 4.358 13 H 0.110 0.890 14 C -0.260 4.260 15 N -0.602 5.602 16 Si 0.810 3.190 17 H -0.212 1.212 18 H -0.188 1.188 19 H -0.223 1.223 20 C 0.022 3.978 21 C -0.048 4.048 22 C -0.218 4.218 23 C 0.271 3.729 24 O -0.438 6.438 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.143 0.857 29 H 0.127 0.873 30 H 0.256 0.744 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.196 0.804 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.373 -4.483 17.432 20.774 hybrid contribution 0.774 0.132 -0.381 0.873 sum -9.599 -4.351 17.050 20.044 Atomic orbital electron populations 1.22092 0.92600 1.05013 1.02273 1.22414 0.96917 0.76230 1.06798 1.47191 1.50267 1.15665 1.02116 1.71042 1.06198 1.10323 1.12840 1.21579 1.07152 0.91053 0.95704 1.17441 0.77310 0.85015 0.82839 1.90823 1.47367 1.18391 1.86797 1.45632 1.65377 1.17861 1.04407 1.23105 0.97667 0.98448 0.79712 1.22825 0.91436 0.99014 0.87468 1.45653 1.04143 1.84673 1.01775 1.19350 0.93143 1.41658 0.81654 0.88977 1.25728 0.95660 1.02143 1.02479 1.70037 0.99148 1.54736 1.36246 0.85010 0.77189 0.77709 0.79098 1.21208 1.18847 1.22281 1.22420 0.94219 0.96780 0.84344 1.22358 0.90690 1.02206 0.89554 1.22884 1.04215 0.93379 1.01303 1.18464 0.80825 0.89685 0.83893 1.90953 1.54621 1.67903 1.30300 0.93367 0.91623 0.87632 0.85729 0.87309 0.74413 0.87180 0.91696 0.92195 0.94214 0.95514 0.95682 0.80396 0.79106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.23 71.98 0.74 -1.15 16 2 C 0.09 1.29 6.27 86.38 0.54 1.83 16 3 N -0.33 -6.33 3.22 -472.48 -1.52 -7.85 16 4 N -0.17 -3.46 10.10 -48.19 -0.49 -3.95 16 5 C 0.02 0.35 6.84 42.59 0.29 0.64 16 6 C 0.59 16.52 7.81 86.80 0.68 17.20 16 7 O -0.56 -19.19 15.98 -3.89 -0.06 -19.25 16 8 N -0.68 -18.97 5.38 -444.35 -2.39 -21.36 16 9 C 0.12 4.19 4.62 45.55 0.21 4.40 16 10 C 0.12 4.33 8.44 83.18 0.70 5.03 16 11 N -0.64 -31.72 3.76 -738.02 -2.78 -34.50 16 12 C -0.23 -12.64 10.73 84.04 0.90 -11.74 16 13 H 0.09 4.75 7.84 -2.91 -0.02 4.73 16 14 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 15 N -0.95 -57.69 11.81 21.65 0.26 -57.43 16 16 Si 0.98 45.10 29.56 68.60 2.03 47.12 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 19 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 20 C 0.15 6.99 7.05 83.27 0.59 7.58 16 21 C -0.02 -0.45 9.68 22.65 0.22 -0.23 16 22 C -0.19 -3.28 10.11 22.57 0.23 -3.05 16 23 C 0.47 10.31 7.47 85.01 0.63 10.94 16 24 O -0.56 -15.03 16.62 -5.26 -0.09 -15.12 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.11 1.50 7.36 -2.39 -0.02 1.49 16 30 H 0.42 9.60 8.09 -92.71 -0.75 8.85 16 31 H 0.11 4.25 7.45 -2.38 -0.02 4.23 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.06 1.95 8.13 -2.38 -0.02 1.93 16 34 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.02 1.35 7.57 -2.39 -0.02 1.33 16 37 H 0.18 2.74 7.72 -2.91 -0.02 2.72 16 38 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -73.25 331.87 1.50 -71.76 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.34 Total: 12.43 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: 6.20 Total: 28.15 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -6.92 Total: -125.10 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.15 Total: -34.37 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.25 1.50 -71.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031119824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.279 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds