Wall clock time and date at job start Tue Mar 31 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36336 * 126.19751 * 2 1 4 4 C 1.36245 * 106.88783 * 180.02562 * 3 2 1 5 5 C 1.47252 * 126.16768 * 180.02562 * 4 3 2 6 6 O 1.21640 * 119.99886 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00116 * 179.97438 * 5 4 3 8 8 C 1.47867 * 126.94668 * 359.69114 * 7 5 4 9 9 C 1.55962 * 105.13352 * 180.62825 * 8 7 5 10 10 H 1.09002 * 116.54986 * 160.09580 * 9 8 7 11 11 C 1.58978 * 98.68979 * 34.63847 * 9 8 7 12 12 C 1.49300 * 126.94367 * 179.97438 * 7 5 4 13 13 H 1.08993 * 116.14870 * 16.68588 * 12 7 5 14 14 C 1.56023 * 104.09272 * 247.54047 * 12 7 5 15 15 N 1.47876 * 105.10393 * 288.76809 * 14 12 7 16 16 C 1.36938 * 126.94295 * 182.02197 * 15 14 12 17 17 H 1.07999 * 119.99788 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99924 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99980 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47137 * 59.99897 * 20 18 16 22 22 H 1.48500 * 109.47469 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46872 * 300.00128 * 20 18 16 24 24 N 1.36034 * 107.66876 * 359.75143 * 4 3 2 25 25 C 1.30701 * 108.94022 * 0.42001 * 24 4 3 26 26 O 1.35458 * 125.54870 * 179.83548 * 25 24 4 27 27 H 1.08998 * 109.47456 * 269.99668 * 1 2 3 28 28 H 1.08998 * 109.47290 * 29.99709 * 1 2 3 29 29 H 1.09006 * 109.47129 * 149.99632 * 1 2 3 30 30 H 1.08002 * 126.55629 * 0.02562 * 3 2 1 31 31 H 1.09004 * 110.31523 * 300.92622 * 8 7 5 32 32 H 1.09003 * 110.31830 * 63.11020 * 8 7 5 33 33 H 1.08996 * 112.07891 * 190.73373 * 11 9 8 34 34 H 1.09002 * 113.30398 * 62.74926 * 11 9 8 35 35 H 1.09006 * 110.31494 * 47.67374 * 14 12 7 36 36 H 1.08996 * 110.31287 * 169.75994 * 14 12 7 37 37 H 0.96995 * 120.00428 * 179.97438 * 19 18 16 38 38 H 0.96700 * 114.00348 * 269.69922 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1002 0.0000 4 6 3.5560 0.6497 -0.0006 5 6 4.7692 1.4842 -0.0003 6 8 4.6733 2.6968 0.0011 7 7 5.9858 0.9045 -0.0004 8 6 6.2799 -0.5446 0.0055 9 6 7.8363 -0.6442 0.0189 10 1 8.2611 -1.5895 0.3567 11 6 8.1510 0.6329 0.9119 12 6 7.3092 1.5958 -0.0007 13 1 7.3011 2.6489 0.2802 14 6 7.9134 1.2591 -1.3992 15 7 8.2659 -0.1754 -1.3315 16 6 8.8656 -0.9226 -2.3098 17 1 9.0735 -1.9686 -2.1393 18 6 9.2064 -0.3356 -3.5206 19 7 8.9536 0.9393 -3.7283 20 14 10.0252 -1.3548 -4.8550 21 1 9.1316 -2.4769 -5.2392 22 1 10.2853 -0.5001 -6.0412 23 1 11.3100 -1.8974 -4.3451 24 7 3.5170 -0.7101 0.0047 25 6 2.2692 -1.0988 -0.0006 26 8 1.8450 -2.3852 -0.0010 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.9500 2.1317 0.0004 31 1 5.8423 -1.0160 0.8856 32 1 5.9000 -1.0116 -0.9032 33 1 9.2120 0.8824 0.9105 34 1 7.7490 0.5621 1.9226 35 1 7.1744 1.4306 -2.1820 36 1 8.8036 1.8610 -1.5816 37 1 9.1921 1.3495 -4.5743 38 1 1.7216 -2.7585 -0.8844 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032606157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:13 Heat of formation + Delta-G solvation = 62.985546 kcal Electronic energy + Delta-G solvation = -23833.265485 eV Core-core repulsion = 20293.874528 eV Total energy + Delta-G solvation = -3539.390957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.17566 -39.69341 -37.72900 -37.16392 -34.31780 -33.43028 -31.32909 -29.26218 -28.83492 -28.37257 -27.24899 -25.05622 -23.91101 -22.46777 -21.52077 -20.30460 -19.68311 -18.78419 -18.13416 -17.39982 -16.61108 -16.19126 -15.63046 -15.49763 -14.90986 -14.50716 -14.42455 -14.23189 -13.80254 -13.22099 -13.11805 -13.11026 -12.59256 -12.05728 -12.02923 -11.78175 -11.49167 -11.19434 -10.89946 -10.75613 -10.63135 -10.44104 -10.26886 -10.08202 -9.93871 -9.82972 -9.56738 -9.50200 -8.60892 -8.55118 -7.77982 -6.81160 -5.67829 -3.01356 1.55871 2.14017 2.37752 3.39174 3.43114 3.47043 3.48761 3.79941 3.89981 4.39274 4.50365 4.59694 4.75589 5.00909 5.02139 5.23676 5.37861 5.42770 5.51479 5.70661 5.77116 5.79158 5.90041 6.17358 6.29936 6.41623 6.43102 6.50861 6.58431 6.72535 6.76600 6.96300 7.40405 7.52397 7.58694 7.72000 7.81059 8.19458 8.26358 8.73672 9.19746 9.80575 10.51282 11.44438 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.004677 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.111040 B = 5984.773522 C = 6554.337028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.467 5.467 3 C 0.033 3.967 4 C -0.029 4.029 5 C 0.611 3.389 6 O -0.561 6.561 7 N -0.589 5.589 8 C 0.102 3.898 9 C 0.137 3.863 10 H 0.104 0.896 11 C -0.155 4.155 12 C 0.098 3.902 13 H 0.112 0.888 14 C 0.176 3.824 15 N -0.596 5.596 16 C -0.227 4.227 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 N -0.441 5.441 25 C 0.369 3.631 26 O -0.441 6.441 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.194 0.806 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.253 0.747 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 -2.835 8.586 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.162 5.162 3 C -0.103 4.103 4 C -0.158 4.158 5 C 0.399 3.601 6 O -0.441 6.441 7 N -0.320 5.320 8 C -0.023 4.023 9 C 0.028 3.972 10 H 0.122 0.878 11 C -0.195 4.195 12 C -0.005 4.005 13 H 0.130 0.870 14 C 0.051 3.949 15 N -0.320 5.320 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 N -0.170 5.170 25 C 0.068 3.932 26 O -0.241 6.241 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.211 0.789 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -15.766 -2.740 8.900 18.311 hybrid contribution -0.643 -0.274 -1.407 1.572 sum -16.410 -3.013 7.492 18.289 Atomic orbital electron populations 1.22060 0.76165 1.04777 1.03981 1.45819 1.08125 1.06659 1.55623 1.22578 0.89744 0.92262 1.05752 1.20521 0.93534 0.89407 1.12359 1.16385 0.80925 0.85818 0.77003 1.90758 1.86337 1.13106 1.53903 1.48972 1.04542 1.09110 1.69378 1.23174 0.98050 0.79675 1.01372 1.23522 0.90919 0.95744 0.86974 0.87787 1.24488 0.99869 0.98212 0.96903 1.24384 0.80194 0.96553 0.99319 0.86986 1.21904 0.97884 0.85174 0.89934 1.45159 1.69655 1.06449 1.10716 1.19011 1.31490 0.92685 0.92332 0.90239 1.24797 1.01477 0.96200 0.97888 1.69909 1.52233 1.10103 1.24554 0.86202 0.79255 0.78889 0.81397 1.21262 1.21696 1.21154 1.71095 1.16002 1.11223 1.18730 1.20416 0.84262 0.81387 1.07122 1.84881 1.86785 1.18312 1.34124 0.90204 0.89168 0.89434 0.78922 0.92020 0.90954 0.89999 0.91478 0.93534 0.92644 0.93644 0.74283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.11 59.85 0.66 1.07 16 2 N -0.47 -5.10 3.16 -125.77 -0.40 -5.50 16 3 C 0.03 0.44 11.29 -16.27 -0.18 0.26 16 4 C -0.03 -0.50 6.83 -83.06 -0.57 -1.07 16 5 C 0.61 12.53 7.88 -12.60 -0.10 12.43 16 6 O -0.56 -12.44 17.23 5.24 0.09 -12.35 16 7 N -0.59 -12.20 2.94 -158.10 -0.46 -12.67 16 8 C 0.10 2.03 4.96 -1.71 -0.01 2.02 16 9 C 0.14 2.78 5.55 -61.49 -0.34 2.44 16 10 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 11 C -0.15 -2.83 6.94 -21.18 -0.15 -2.98 16 12 C 0.10 2.03 5.18 -62.53 -0.32 1.70 16 13 H 0.11 2.22 8.06 -51.93 -0.42 1.80 16 14 C 0.18 4.43 4.79 -1.67 -0.01 4.42 16 15 N -0.60 -15.08 3.06 -155.19 -0.48 -15.56 16 16 C -0.23 -6.26 10.37 -15.06 -0.16 -6.42 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -27.50 10.56 55.49 0.59 -26.91 16 20 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 N -0.44 -7.48 9.03 -11.22 -0.10 -7.58 16 25 C 0.37 4.92 9.03 -89.18 -0.81 4.11 16 26 O -0.44 -4.55 13.55 -18.07 -0.24 -4.80 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 32 H 0.07 1.62 7.89 -51.93 -0.41 1.21 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.35 7.68 -51.93 -0.40 0.95 16 36 H 0.06 1.51 7.46 -51.93 -0.39 1.12 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.40 2.18 9.06 45.56 0.41 2.60 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -36.11 320.72 -7.38 -43.49 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.11 Total: 2.16 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: -2.07 Total: 17.70 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.85 Total: -68.22 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.15 Total: -17.15 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.11 -7.38 -43.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032606157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.476 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds