Wall clock time and date at job start Tue Mar 31 2020 03:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 119.99737 * 2 1 4 4 O 1.21511 * 119.99989 * 176.24797 * 3 2 1 5 5 C 1.48152 * 119.99979 * 356.25208 * 3 2 1 6 6 C 1.39897 * 121.12034 * 215.15495 * 5 3 2 7 7 N 1.31768 * 119.78695 * 179.70568 * 6 5 3 8 8 N 1.28275 * 122.41630 * 0.59321 * 7 6 5 9 9 C 1.32271 * 122.43713 * 359.68937 * 8 7 6 10 10 O 1.35705 * 120.08220 * 179.97438 * 9 8 7 11 11 C 1.39238 * 119.84072 * 0.02562 * 9 8 7 12 12 C 1.46502 * 120.00203 * 180.02562 * 2 1 3 13 13 H 1.08997 * 110.91208 * 183.89798 * 12 2 1 14 14 C 1.55158 * 111.00221 * 59.99827 * 12 2 1 15 15 C 1.54320 * 102.94007 * 206.42314 * 14 12 2 16 16 N 1.47020 * 107.27337 * 22.19347 * 15 14 12 17 17 C 1.36931 * 125.64882 * 181.02107 * 16 15 14 18 18 H 1.07997 * 119.99950 * 185.05130 * 17 16 15 19 19 C 1.38813 * 119.99976 * 5.04974 * 17 16 15 20 20 N 1.31613 * 120.00172 * 4.80105 * 19 17 16 21 21 Si 1.86802 * 120.00027 * 185.06803 * 19 17 16 22 22 H 1.48495 * 109.47562 * 264.72887 * 21 19 17 23 23 H 1.48501 * 109.47062 * 24.72977 * 21 19 17 24 24 H 1.48504 * 109.47098 * 144.72437 * 21 19 17 25 25 C 1.47419 * 108.70039 * 1.28804 * 16 15 14 26 26 H 1.09003 * 109.47019 * 275.36729 * 1 2 3 27 27 H 1.09002 * 109.47429 * 35.37283 * 1 2 3 28 28 H 1.09004 * 109.47204 * 155.37629 * 1 2 3 29 29 H 1.08009 * 120.10484 * 359.97438 * 6 5 3 30 30 H 0.96698 * 114.00370 * 270.02639 * 10 9 8 31 31 H 1.07997 * 121.11963 * 180.02562 * 11 9 8 32 32 H 1.08999 * 110.71824 * 88.06258 * 14 12 2 33 33 H 1.09002 * 110.87424 * 324.85597 * 14 12 2 34 34 H 1.09002 * 109.88472 * 262.77474 * 15 14 12 35 35 H 1.09006 * 109.87872 * 141.61568 * 15 14 12 36 36 H 0.97003 * 120.00234 * 180.27253 * 20 19 17 37 37 H 1.09003 * 110.36931 * 94.48337 * 25 16 15 38 38 H 1.08999 * 110.36826 * 216.80278 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3520 1.1684 0.0689 5 6 1.4004 2.4488 -0.0839 6 6 1.9261 3.5419 -0.7809 7 7 1.2441 4.6677 -0.8436 8 7 0.1037 4.8134 -0.2748 9 6 -0.4757 3.8428 0.4121 10 8 -1.6836 4.0494 0.9952 11 6 0.1571 2.6087 0.5363 12 6 2.1976 -1.2687 -0.0006 13 1 3.2718 -1.0977 0.0687 14 6 1.8484 -2.1119 -1.2554 15 6 2.1064 -3.5581 -0.7827 16 7 2.0266 -3.5584 0.6853 17 6 2.2163 -4.6464 1.4947 18 1 2.0559 -4.5620 2.5593 19 6 2.6148 -5.8580 0.9467 20 7 2.9016 -5.9378 -0.3353 21 14 2.7368 -7.3768 2.0274 22 1 4.1363 -7.5398 2.4962 23 1 1.8369 -7.2244 3.1988 24 1 2.3338 -8.5738 1.2463 25 6 1.7021 -2.1945 1.1413 26 1 -0.3633 0.0961 1.0232 27 1 -0.3634 0.8380 -0.5949 28 1 -0.3634 -0.9342 -0.4282 29 1 2.8859 3.4619 -1.2698 30 1 -1.6311 4.3894 1.8989 31 1 -0.2974 1.8018 1.0919 32 1 2.5043 -1.8552 -2.0872 33 1 0.8033 -1.9782 -1.5347 34 1 3.0982 -3.8805 -1.1001 35 1 1.3483 -4.2238 -1.1954 36 1 3.1763 -6.7854 -0.7190 37 1 0.6264 -2.0868 1.2804 38 1 2.2297 -1.9687 2.0680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033165956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:09 Heat of formation + Delta-G solvation = 9.218898 kcal Electronic energy + Delta-G solvation = -23196.134657 eV Core-core repulsion = 19654.412204 eV Total energy + Delta-G solvation = -3541.722454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.60101 -41.06582 -39.08453 -38.57441 -36.60365 -34.83996 -33.72337 -32.54150 -31.09989 -29.27667 -28.34672 -26.90132 -25.96777 -25.52865 -22.62858 -22.05587 -20.80404 -19.93603 -18.99041 -18.87282 -18.37166 -17.95888 -17.35995 -16.83521 -16.69443 -16.32399 -15.86513 -15.46364 -15.08529 -14.87273 -14.54133 -14.27865 -14.00227 -13.95433 -13.69068 -13.28594 -13.09364 -12.89451 -12.74859 -12.52793 -12.38760 -12.11601 -12.02378 -11.83462 -11.66014 -11.51208 -11.36650 -10.91531 -10.74140 -10.56161 -9.83479 -8.91581 -7.84890 -5.23747 -0.86451 -0.39237 1.36441 1.47276 1.48564 1.57071 1.61440 2.09134 2.42453 2.50066 2.92766 3.11308 3.30837 3.33023 3.60808 3.64412 3.85631 3.91529 3.99507 4.10603 4.15155 4.26390 4.48478 4.52031 4.58496 4.67936 4.76581 4.84640 4.86946 4.98631 5.06914 5.37824 5.45190 5.58953 5.74501 6.13352 6.19058 6.46791 6.79289 7.07713 7.41521 7.74279 8.37149 9.23438 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.003291 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.672908 B = 8506.257539 C = 8850.303399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.583 5.583 3 C 0.562 3.438 4 O -0.560 6.560 5 C -0.107 4.107 6 C 0.081 3.919 7 N -0.235 5.235 8 N -0.274 5.274 9 C 0.266 3.734 10 O -0.472 6.472 11 C -0.090 4.090 12 C 0.139 3.861 13 H 0.086 0.914 14 C -0.134 4.134 15 C 0.182 3.818 16 N -0.624 5.624 17 C -0.243 4.243 18 H 0.085 0.915 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.978 3.022 22 H -0.289 1.289 23 H -0.266 1.266 24 H -0.294 1.294 25 C 0.132 3.868 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.194 0.806 30 H 0.431 0.569 31 H 0.199 0.801 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.007 0.993 36 H 0.247 0.753 37 H 0.050 0.950 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 18.105 2.046 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.313 5.313 3 C 0.349 3.651 4 O -0.439 6.439 5 C -0.122 4.122 6 C -0.085 4.085 7 N -0.077 5.077 8 N -0.126 5.126 9 C 0.079 3.921 10 O -0.281 6.281 11 C -0.121 4.121 12 C 0.034 3.966 13 H 0.104 0.896 14 C -0.173 4.173 15 C 0.057 3.943 16 N -0.351 5.351 17 C -0.372 4.372 18 H 0.102 0.898 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.806 3.194 22 H -0.216 1.216 23 H -0.191 1.191 24 H -0.221 1.221 25 C 0.006 3.994 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.211 0.789 30 H 0.294 0.706 31 H 0.216 0.784 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.341 19.234 1.073 21.409 hybrid contribution 0.638 -2.490 1.188 2.832 sum -8.703 16.744 2.261 19.006 Atomic orbital electron populations 1.22568 0.77114 1.05132 1.03873 1.47679 1.08515 1.04379 1.70755 1.18215 0.86588 0.83538 0.76745 1.90824 1.14803 1.87247 1.51035 1.20996 0.95709 0.95367 1.00088 1.24710 1.01197 0.88106 0.94492 1.73115 1.00065 1.20993 1.13572 1.72678 1.04153 1.29115 1.06669 1.20758 0.87055 0.89759 0.94491 1.84786 1.20619 1.87099 1.35630 1.23521 0.91935 0.99753 0.96843 1.22133 0.96631 0.81586 0.96257 0.89553 1.23057 1.02528 0.94820 0.96920 1.20943 0.98387 0.91751 0.83212 1.44651 1.83085 1.04688 1.02678 1.19443 1.38620 0.88220 0.90950 0.89765 1.25661 1.01450 1.00987 0.97593 1.70164 1.52505 1.24878 1.12218 0.85072 0.77645 0.78789 0.77870 1.21627 1.19053 1.22081 1.21936 0.98354 0.83969 0.95107 0.88973 0.89083 0.89487 0.78898 0.70581 0.78436 0.90766 0.89318 0.95879 0.97508 0.94348 0.93234 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 7.43 127.77 0.95 1.78 16 2 N -0.58 -14.03 2.91 -817.46 -2.38 -16.41 16 3 C 0.56 14.27 7.45 86.88 0.65 14.92 16 4 O -0.56 -18.90 16.29 -3.75 -0.06 -18.96 16 5 C -0.11 -2.06 5.35 -19.85 -0.11 -2.16 16 6 C 0.08 1.63 10.94 85.10 0.93 2.56 16 7 N -0.24 -5.33 11.48 -56.50 -0.65 -5.98 16 8 N -0.27 -5.93 11.50 -170.30 -1.96 -7.88 16 9 C 0.27 4.12 7.85 84.87 0.67 4.79 16 10 O -0.47 -4.93 13.57 -90.25 -1.23 -6.15 16 11 C -0.09 -1.23 7.72 22.90 0.18 -1.05 16 12 C 0.14 4.55 3.46 46.46 0.16 4.71 16 13 H 0.09 3.33 7.02 -2.39 -0.02 3.31 16 14 C -0.13 -4.57 6.49 31.78 0.21 -4.36 16 15 C 0.18 8.62 5.42 86.73 0.47 9.09 16 16 N -0.62 -30.66 3.39 -691.57 -2.35 -33.01 16 17 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 19 C -0.06 -3.54 5.47 84.86 0.46 -3.08 16 20 N -0.95 -56.02 10.39 21.65 0.23 -55.79 16 21 Si 0.98 44.72 29.56 68.60 2.03 46.74 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 C 0.13 4.94 6.79 86.93 0.59 5.53 16 26 H 0.09 0.96 6.83 -2.39 -0.02 0.94 16 27 H 0.09 1.06 5.82 -2.39 -0.01 1.04 16 28 H 0.09 1.45 6.37 -2.38 -0.02 1.43 16 29 H 0.19 3.45 8.05 -2.91 -0.02 3.43 16 30 H 0.43 0.00 9.06 -74.06 -0.67 -0.68 16 31 H 0.20 1.56 5.13 -2.91 -0.01 1.55 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 2.54 6.48 -2.39 -0.02 2.53 16 34 H 0.02 1.26 6.98 -2.39 -0.02 1.25 16 35 H 0.01 0.35 7.88 -2.38 -0.02 0.33 16 36 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.05 1.62 6.95 -2.39 -0.02 1.61 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.83 314.05 0.10 -74.73 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 0.45 Total: 2.36 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.02 Total: 20.37 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -7.11 Total: -119.08 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.29 Total: -25.12 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -74.83 0.10 -74.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033165956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.944 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds