Wall clock time and date at job start Tue Mar 31 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35503 * 117.00567 * 2 1 4 4 C 1.39637 * 120.49869 * 179.97438 * 3 2 1 5 5 C 1.39146 * 118.21002 * 180.02562 * 4 3 2 6 6 C 1.48452 * 120.51956 * 180.02562 * 5 4 3 7 7 O 1.21484 * 119.99947 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00014 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47144 * 179.97438 * 9 8 6 11 11 H 1.09006 * 112.95792 * 306.67347 * 10 9 8 12 12 C 1.53943 * 113.77149 * 175.00016 * 10 9 8 13 13 C 1.53944 * 86.28975 * 222.09075 * 12 10 9 14 14 N 1.47575 * 113.77316 * 78.50144 * 10 9 8 15 15 C 1.36936 * 134.49208 * 318.94460 * 14 10 9 16 16 H 1.08001 * 120.00155 * 359.97438 * 15 14 10 17 17 C 1.38815 * 120.00285 * 179.97438 * 15 14 10 18 18 N 1.31620 * 119.99781 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00084 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47174 * 90.00276 * 19 17 15 21 21 H 1.48502 * 109.46787 * 210.00446 * 19 17 15 22 22 H 1.48506 * 109.47228 * 330.00192 * 19 17 15 23 23 N 1.33282 * 118.96655 * 0.02562 * 5 4 3 24 24 C 1.31523 * 120.88351 * 359.97438 * 23 5 4 25 25 N 1.31894 * 121.99009 * 359.97438 * 24 23 5 26 26 H 1.08999 * 109.46614 * 300.00253 * 1 2 3 27 27 H 1.09005 * 109.47139 * 59.99982 * 1 2 3 28 28 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.89659 * 0.04465 * 4 3 2 30 30 H 0.96995 * 120.00405 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47425 * 299.99334 * 9 8 6 32 32 H 1.08999 * 109.47760 * 59.99248 * 9 8 6 33 33 H 1.09005 * 113.74341 * 336.43214 * 12 10 9 34 34 H 1.08997 * 113.74546 * 107.63869 * 12 10 9 35 35 H 1.08994 * 113.77279 * 137.91129 * 13 12 10 36 36 H 1.09006 * 113.76806 * 269.19353 * 13 12 10 37 37 H 0.96996 * 119.99829 * 180.02562 * 18 17 15 38 38 H 1.08000 * 119.00404 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 3.4380 1.2924 0.0005 5 6 4.0199 2.5563 0.0011 6 6 5.4968 2.7064 0.0011 7 8 6.2074 1.7211 0.0011 8 7 6.0492 3.9357 0.0011 9 6 7.5067 4.0838 0.0016 10 6 7.8683 5.5704 0.0009 11 1 7.3867 6.1248 -0.8048 12 6 9.3786 5.8417 0.1242 13 6 8.9950 6.9680 1.1011 14 7 7.7467 6.2130 1.3238 15 6 6.8399 6.1385 2.3471 16 1 5.9815 5.4886 2.2618 17 6 7.0237 6.8983 3.4942 18 7 8.0695 7.6907 3.5981 19 14 5.7862 6.7972 4.8898 20 1 6.1917 5.7255 5.8343 21 1 5.7408 8.0972 5.6062 22 1 4.4423 6.4886 4.3384 23 7 3.2305 3.6303 0.0016 24 6 1.9212 3.5057 0.0010 25 7 1.3315 2.3260 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0481 0.4011 0.0002 30 1 5.4818 4.7224 0.0007 31 1 7.9197 3.6096 0.8919 32 1 7.9206 3.6090 -0.8880 33 1 9.9343 5.0275 0.5895 34 1 9.8376 6.1964 -0.7986 35 1 9.6370 7.0247 1.9801 36 1 8.8459 7.9348 0.6202 37 1 8.1982 8.2213 4.3997 38 1 1.3104 4.3965 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038257233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:21 Heat of formation + Delta-G solvation = 38.607886 kcal Electronic energy + Delta-G solvation = -22837.080833 eV Core-core repulsion = 19296.632782 eV Total energy + Delta-G solvation = -3540.448051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50311 -39.50606 -38.57590 -37.86462 -34.28409 -33.46280 -32.15842 -32.00076 -28.42878 -27.91160 -27.61768 -24.83607 -24.44435 -23.35562 -22.17681 -20.81664 -19.37960 -18.76302 -18.39010 -16.80252 -16.54233 -16.31231 -15.80911 -15.61690 -15.41141 -14.99973 -14.82908 -14.60315 -14.17325 -13.98599 -13.69576 -13.25690 -12.96021 -12.39281 -12.01864 -11.88103 -11.42948 -11.13102 -11.05222 -11.01286 -10.74478 -10.56547 -10.54353 -10.34945 -9.94421 -9.74764 -9.63682 -9.41368 -9.37125 -8.78787 -8.67930 -6.88541 -5.75093 -3.07440 0.36910 0.81104 2.47404 2.81774 3.24541 3.39696 3.44963 3.46042 3.72357 3.78484 3.90259 4.44013 4.59435 4.79155 4.88768 4.94440 5.05261 5.15337 5.25535 5.37447 5.40129 5.61200 5.68353 5.87251 5.91067 6.03969 6.28288 6.39588 6.46374 6.61014 6.65863 6.76974 6.82331 7.26106 7.41096 7.60838 7.64516 7.85452 8.00046 8.32755 9.06303 9.72733 10.60053 11.41656 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.004244 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.185348 B = 6596.425183 C = 7755.169026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.299 6.299 3 C 0.361 3.639 4 C -0.186 4.186 5 C 0.165 3.835 6 C 0.564 3.436 7 O -0.533 6.533 8 N -0.684 5.684 9 C 0.120 3.880 10 C 0.125 3.875 11 H 0.052 0.948 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.602 5.602 15 C -0.218 4.218 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.906 3.094 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 N -0.513 5.513 24 C 0.336 3.664 25 N -0.568 5.568 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.165 0.835 30 H 0.415 0.585 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.253 0.747 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 -10.401 -10.030 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.173 3.827 4 C -0.211 4.211 5 C 0.021 3.979 6 C 0.347 3.653 7 O -0.410 6.410 8 N -0.333 5.333 9 C -0.005 4.005 10 C 0.018 3.982 11 H 0.069 0.931 12 C -0.194 4.194 13 C 0.034 3.966 14 N -0.328 5.328 15 C -0.346 4.346 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 N -0.234 5.234 24 C 0.048 3.952 25 N -0.299 5.299 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.183 0.817 30 H 0.252 0.748 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -11.224 -10.509 -9.700 18.180 hybrid contribution -0.990 -0.119 0.880 1.330 sum -12.214 -10.627 -8.820 18.437 Atomic orbital electron populations 1.22992 0.76391 1.03508 1.02908 1.86255 1.23566 1.23684 1.86714 1.20022 0.89240 0.85160 0.88297 1.21901 0.92614 1.00664 1.05878 1.21577 0.95367 0.88515 0.92468 1.17662 0.85047 0.84380 0.78257 1.90780 1.61335 1.38182 1.50718 1.45853 1.09144 1.07674 1.70652 1.21930 0.78252 0.98458 1.01822 1.22514 0.94727 0.90620 0.90361 0.93116 1.23778 0.94825 1.01196 0.99609 1.22196 0.87581 0.91574 0.95294 1.46087 1.26719 1.48260 1.11734 1.18963 1.02196 1.20739 0.92654 0.90298 1.24738 0.98269 0.99096 0.98176 1.69816 1.28742 1.30120 1.28043 0.86210 0.80672 0.76929 0.82505 1.21667 1.21664 1.20728 1.68428 1.06597 1.32951 1.15374 1.24734 0.88089 0.93777 0.88601 1.68052 1.42020 0.99343 1.20459 0.91808 0.91860 0.88103 0.81709 0.74778 0.90464 0.91649 0.90460 0.92736 0.90798 0.95542 0.93726 0.77653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.41 101.05 1.05 1.33 16 2 O -0.30 -3.29 10.49 -18.20 -0.19 -3.48 16 3 C 0.36 4.55 7.54 -16.68 -0.13 4.42 16 4 C -0.19 -2.55 9.68 -38.72 -0.37 -2.92 16 5 C 0.17 2.52 6.79 -82.69 -0.56 1.96 16 6 C 0.56 9.80 7.83 -12.05 -0.09 9.70 16 7 O -0.53 -10.32 16.42 5.38 0.09 -10.23 16 8 N -0.68 -11.92 5.52 -61.05 -0.34 -12.25 16 9 C 0.12 2.13 5.54 -4.04 -0.02 2.10 16 10 C 0.13 2.38 4.33 -66.87 -0.29 2.09 16 11 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.16 -2.78 7.86 -25.81 -0.20 -2.98 16 13 C 0.16 3.61 7.51 -2.98 -0.02 3.59 16 14 N -0.60 -14.60 3.57 -170.77 -0.61 -15.21 16 15 C -0.22 -5.88 10.51 -15.06 -0.16 -6.04 16 16 H 0.08 2.08 7.80 -52.49 -0.41 1.67 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -26.98 11.38 55.49 0.63 -26.35 16 19 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 N -0.51 -7.34 9.70 -11.20 -0.11 -7.45 16 24 C 0.34 3.97 12.27 -92.30 -1.13 2.83 16 25 N -0.57 -6.84 9.36 -14.65 -0.14 -6.98 16 26 H 0.06 0.48 8.12 -51.93 -0.42 0.05 16 27 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.17 2.14 7.73 -52.48 -0.41 1.73 16 30 H 0.42 7.24 7.86 -40.82 -0.32 6.92 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.87 7.15 -51.93 -0.37 1.50 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 38 H 0.21 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -32.34 333.19 -7.56 -39.90 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.87 Total: 3.98 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: -2.03 Total: 15.81 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -0.56 Total: -68.24 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.10 Total: -13.72 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.34 -7.56 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038257233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.510 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds