Wall clock time and date at job start Tue Mar 31 2020 03:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35503 * 117.00567 * 2 1 4 4 C 1.39637 * 120.49869 * 179.97438 * 3 2 1 5 5 C 1.39146 * 118.21002 * 180.02562 * 4 3 2 6 6 C 1.48452 * 120.51956 * 180.02562 * 5 4 3 7 7 O 1.21484 * 119.99947 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00014 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47144 * 179.97438 * 9 8 6 11 11 H 1.09006 * 112.95792 * 306.67347 * 10 9 8 12 12 C 1.53943 * 113.77149 * 175.00016 * 10 9 8 13 13 C 1.53944 * 86.28975 * 222.09075 * 12 10 9 14 14 N 1.47575 * 113.77316 * 78.50144 * 10 9 8 15 15 C 1.36936 * 134.49208 * 318.94460 * 14 10 9 16 16 H 1.08001 * 120.00155 * 359.97438 * 15 14 10 17 17 C 1.38815 * 120.00285 * 179.97438 * 15 14 10 18 18 N 1.31620 * 119.99781 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00084 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47174 * 90.00276 * 19 17 15 21 21 H 1.48502 * 109.46787 * 210.00446 * 19 17 15 22 22 H 1.48506 * 109.47228 * 330.00192 * 19 17 15 23 23 N 1.33282 * 118.96655 * 0.02562 * 5 4 3 24 24 C 1.31523 * 120.88351 * 359.97438 * 23 5 4 25 25 N 1.31894 * 121.99009 * 359.97438 * 24 23 5 26 26 H 1.08999 * 109.46614 * 300.00253 * 1 2 3 27 27 H 1.09005 * 109.47139 * 59.99982 * 1 2 3 28 28 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.89659 * 0.04465 * 4 3 2 30 30 H 0.96995 * 120.00405 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47425 * 299.99334 * 9 8 6 32 32 H 1.08999 * 109.47760 * 59.99248 * 9 8 6 33 33 H 1.09005 * 113.74341 * 336.43214 * 12 10 9 34 34 H 1.08997 * 113.74546 * 107.63869 * 12 10 9 35 35 H 1.08994 * 113.77279 * 137.91129 * 13 12 10 36 36 H 1.09006 * 113.76806 * 269.19353 * 13 12 10 37 37 H 0.96996 * 119.99829 * 180.02562 * 18 17 15 38 38 H 1.08000 * 119.00404 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2073 0.0000 4 6 3.4380 1.2924 0.0005 5 6 4.0199 2.5563 0.0011 6 6 5.4968 2.7064 0.0011 7 8 6.2074 1.7211 0.0011 8 7 6.0492 3.9357 0.0011 9 6 7.5067 4.0838 0.0016 10 6 7.8683 5.5704 0.0009 11 1 7.3867 6.1248 -0.8048 12 6 9.3786 5.8417 0.1242 13 6 8.9950 6.9680 1.1011 14 7 7.7467 6.2130 1.3238 15 6 6.8399 6.1385 2.3471 16 1 5.9815 5.4886 2.2618 17 6 7.0237 6.8983 3.4942 18 7 8.0695 7.6907 3.5981 19 14 5.7862 6.7972 4.8898 20 1 6.1917 5.7255 5.8343 21 1 5.7408 8.0972 5.6062 22 1 4.4423 6.4886 4.3384 23 7 3.2305 3.6303 0.0016 24 6 1.9212 3.5057 0.0010 25 7 1.3315 2.3260 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0481 0.4011 0.0002 30 1 5.4818 4.7224 0.0007 31 1 7.9197 3.6096 0.8919 32 1 7.9206 3.6090 -0.8880 33 1 9.9343 5.0275 0.5895 34 1 9.8376 6.1964 -0.7986 35 1 9.6370 7.0247 1.9801 36 1 8.8459 7.9348 0.6202 37 1 8.1982 8.2213 4.3997 38 1 1.3104 4.3965 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038257233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:20 Heat of formation + Delta-G solvation = 14.594320 kcal Electronic energy + Delta-G solvation = -22838.122139 eV Core-core repulsion = 19296.632782 eV Total energy + Delta-G solvation = -3541.489358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.50833 -40.79969 -39.70026 -39.33168 -35.71436 -34.53980 -34.14548 -32.99249 -29.97350 -29.56386 -28.54871 -25.98136 -25.41209 -25.26573 -23.65942 -22.07847 -20.95411 -20.02542 -19.43796 -18.50285 -17.58166 -17.42226 -17.09237 -17.03415 -16.64787 -16.36853 -16.05174 -15.79986 -15.60450 -15.21755 -15.12718 -14.76379 -14.55074 -13.61094 -13.27825 -13.00531 -12.93822 -12.73918 -12.69278 -12.59711 -12.26982 -12.02628 -11.89590 -11.67111 -11.55875 -11.47953 -11.20737 -10.81720 -10.64231 -10.37367 -10.11151 -8.85746 -7.84983 -5.15945 -0.72369 -0.16153 1.43497 1.44459 1.52078 1.53011 1.59365 2.06588 2.48142 2.65497 2.80173 2.92344 3.34467 3.40697 3.56449 3.75061 3.96361 4.04438 4.13806 4.37580 4.38457 4.38650 4.43718 4.62684 4.69195 4.73509 4.89136 4.97196 5.09878 5.10838 5.30167 5.37271 5.52129 5.64459 5.77719 5.90926 6.01167 6.35456 6.77988 6.96735 6.99799 7.67904 8.62312 9.31802 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.004244 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.185348 B = 6596.425183 C = 7755.169026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.364 3.636 4 C -0.191 4.191 5 C 0.151 3.849 6 C 0.564 3.436 7 O -0.559 6.559 8 N -0.685 5.685 9 C 0.128 3.872 10 C 0.131 3.869 11 H 0.072 0.928 12 C -0.128 4.128 13 C 0.149 3.851 14 N -0.629 5.629 15 C -0.210 4.210 16 H 0.081 0.919 17 C -0.068 4.068 18 N -0.953 5.953 19 Si 0.962 3.038 20 H -0.294 1.294 21 H -0.295 1.295 22 H -0.270 1.270 23 N -0.530 5.530 24 C 0.339 3.661 25 N -0.563 5.563 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.166 0.834 30 H 0.416 0.584 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.022 0.978 37 H 0.245 0.755 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 -11.328 -11.418 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.208 6.208 3 C 0.175 3.825 4 C -0.215 4.215 5 C 0.007 3.993 6 C 0.348 3.652 7 O -0.437 6.437 8 N -0.334 5.334 9 C 0.003 3.997 10 C 0.025 3.975 11 H 0.089 0.911 12 C -0.167 4.167 13 C 0.024 3.976 14 N -0.356 5.356 15 C -0.339 4.339 16 H 0.099 0.901 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.792 3.208 20 H -0.222 1.222 21 H -0.222 1.222 22 H -0.195 1.195 23 N -0.251 5.251 24 C 0.051 3.949 25 N -0.294 5.294 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.148 0.852 29 H 0.184 0.816 30 H 0.253 0.747 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -12.959 -11.461 -11.127 20.569 hybrid contribution -0.546 0.094 1.231 1.350 sum -13.504 -11.366 -9.895 20.236 Atomic orbital electron populations 1.23303 0.74341 1.05585 1.03141 1.86263 1.25554 1.22845 1.86166 1.20092 0.89011 0.85892 0.87537 1.21916 0.93413 1.00165 1.06043 1.21262 0.94287 0.89504 0.94224 1.17947 0.86081 0.83825 0.77348 1.90755 1.62321 1.38800 1.51840 1.45836 1.08944 1.07862 1.70744 1.21764 0.78698 0.97431 1.01770 1.22695 0.95623 0.90950 0.88222 0.91099 1.23561 0.94401 0.98895 0.99813 1.22177 0.87027 0.93051 0.95352 1.46437 1.26678 1.49081 1.13390 1.19259 1.02060 1.19229 0.93303 0.90100 1.25443 1.00122 0.99937 1.00592 1.69988 1.30511 1.31545 1.28252 0.85310 0.79350 0.76242 0.79899 1.22190 1.22154 1.19475 1.68417 1.07659 1.32737 1.16336 1.25471 0.87538 0.94840 0.87019 1.68168 1.41681 0.99290 1.20258 0.91753 0.91368 0.85222 0.81627 0.74742 0.93107 0.89070 0.90142 0.88600 0.94276 0.95987 0.94607 0.74158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.41 113.37 1.18 1.55 16 2 O -0.31 -6.14 10.49 -88.04 -0.92 -7.06 16 3 C 0.36 8.56 7.54 84.91 0.64 9.20 16 4 C -0.19 -5.06 9.68 22.83 0.22 -4.84 16 5 C 0.15 4.48 6.79 41.87 0.28 4.77 16 6 C 0.56 19.29 7.83 86.97 0.68 19.97 16 7 O -0.56 -21.47 16.42 -3.67 -0.06 -21.53 16 8 N -0.68 -23.19 5.52 -465.38 -2.57 -25.76 16 9 C 0.13 4.36 5.54 86.38 0.48 4.83 16 10 C 0.13 4.73 4.33 45.09 0.20 4.93 16 11 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 12 C -0.13 -4.30 7.86 31.25 0.25 -4.06 16 13 C 0.15 6.78 7.51 86.48 0.65 7.43 16 14 N -0.63 -30.36 3.57 -694.19 -2.48 -32.84 16 15 C -0.21 -11.35 10.51 84.03 0.88 -10.46 16 16 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 17 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 18 N -0.95 -57.39 11.38 21.65 0.25 -57.15 16 19 Si 0.96 46.37 29.55 68.60 2.03 48.39 16 20 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 21 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 N -0.53 -14.40 9.70 -189.35 -1.84 -16.23 16 24 C 0.34 7.21 12.27 180.94 2.22 9.43 16 25 N -0.56 -12.30 9.36 -313.01 -2.93 -15.23 16 26 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 27 H 0.07 0.79 8.12 -2.38 -0.02 0.77 16 28 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.17 4.25 7.73 -2.91 -0.02 4.22 16 30 H 0.42 14.04 7.86 -92.71 -0.73 13.31 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.08 2.67 8.10 -2.38 -0.02 2.66 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.04 2.04 7.15 -2.39 -0.02 2.02 16 36 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.24 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -70.67 333.19 -0.02 -70.69 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.36 Total: 17.37 kcal Atomic # 6 Polarization: 31.21 SS G_CDS: 8.15 Total: 39.35 kcal Atomic # 7 Polarization: -137.64 SS G_CDS: -9.57 Total: -147.21 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.98 Total: -28.59 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -70.67 -0.02 -70.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038257233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.284 kcal (2) G-P(sol) polarization free energy of solvation -70.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds