Wall clock time and date at job start Tue Mar 31 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35473 * 117.00145 * 2 1 4 4 N 1.32425 * 119.11060 * 0.02562 * 3 2 1 5 5 C 1.32136 * 120.97328 * 180.02562 * 4 3 2 6 6 C 1.38806 * 119.21765 * 359.72478 * 5 4 3 7 7 C 1.39458 * 118.38951 * 0.51554 * 6 5 4 8 8 C 1.48462 * 120.51501 * 179.75444 * 7 6 5 9 9 O 1.21473 * 119.99933 * 359.73124 * 8 7 6 10 10 N 1.34779 * 119.99815 * 179.72392 * 8 7 6 11 11 C 1.46504 * 119.99668 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46966 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.77951 * 56.27255 * 12 11 10 14 14 C 1.53492 * 113.46722 * 187.05955 * 12 11 10 15 15 C 1.53503 * 83.34380 * 140.84700 * 14 12 11 16 16 N 1.47066 * 113.46558 * 285.49627 * 12 11 10 17 17 C 1.36937 * 136.06113 * 37.83696 * 16 12 11 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 12 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 12 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47363 * 60.00463 * 21 19 17 23 23 H 1.48506 * 109.46719 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47174 * 300.00290 * 21 19 17 25 25 N 1.32084 * 119.11498 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47662 * 300.00477 * 1 2 3 27 27 H 1.08999 * 109.47206 * 60.00389 * 1 2 3 28 28 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.39000 * 180.02562 * 5 4 3 30 30 H 1.08011 * 120.80104 * 180.29682 * 6 5 4 31 31 H 0.96999 * 119.99977 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.47023 * 59.99980 * 11 10 8 33 33 H 1.09003 * 109.47215 * 299.99892 * 11 10 8 34 34 H 1.08996 * 114.20649 * 254.43356 * 14 12 11 35 35 H 1.08998 * 114.21061 * 27.06495 * 14 12 11 36 36 H 1.09003 * 113.46532 * 219.15331 * 15 14 12 37 37 H 1.09000 * 113.46688 * 88.71677 * 15 14 12 38 38 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3056 2.3064 0.0005 5 6 1.8669 3.5026 0.0000 6 6 3.2515 3.6013 0.0048 7 6 4.0002 2.4247 -0.0011 8 6 5.4839 2.4754 -0.0019 9 8 6.0550 3.5475 -0.0023 10 7 6.1972 1.3318 -0.0020 11 6 7.6614 1.3818 -0.0022 12 6 8.2203 -0.0424 -0.0029 13 1 7.8549 -0.6388 -0.8390 14 6 9.7443 -0.1011 0.1699 15 6 9.4189 -1.3182 1.0468 16 7 8.0989 -0.7198 1.2968 17 6 7.1689 -0.7676 2.3007 18 1 6.2541 -0.1999 2.2169 19 6 7.4014 -1.5467 3.4259 20 7 8.5162 -2.2391 3.5279 21 14 6.1324 -1.6124 4.7950 22 1 4.8502 -2.1333 4.2569 23 1 6.6165 -2.5083 5.8760 24 1 5.9221 -0.2475 5.3410 25 7 3.3639 1.2558 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.2557 4.3929 0.0009 30 1 3.7371 4.5661 0.0093 31 1 5.7411 0.4757 -0.0019 32 1 8.0071 1.9078 0.8878 33 1 8.0069 1.9078 -0.8922 34 1 10.2887 -0.3411 -0.7434 35 1 10.1655 0.7450 0.7128 36 1 10.0399 -1.3882 1.9399 37 1 9.3729 -2.2543 0.4903 38 1 8.6788 -2.7832 4.3142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038498145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:31 Heat of formation + Delta-G solvation = 50.761755 kcal Electronic energy + Delta-G solvation = -23098.094138 eV Core-core repulsion = 19558.173118 eV Total energy + Delta-G solvation = -3539.921020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49099 -39.50355 -38.40396 -37.92341 -34.44838 -33.84139 -32.18026 -31.64581 -28.32881 -27.88735 -27.56692 -25.33375 -23.94118 -23.44768 -22.03311 -20.77693 -19.40479 -18.76668 -18.26608 -17.09843 -16.61654 -16.48707 -15.67421 -15.59176 -15.36396 -14.74082 -14.71906 -14.43260 -14.07063 -13.88732 -13.66842 -13.21335 -12.92629 -12.23614 -11.95581 -11.57200 -11.52418 -11.38570 -11.10509 -11.02675 -10.94931 -10.74701 -10.59085 -10.33860 -9.91167 -9.81763 -9.47325 -9.25907 -9.19989 -8.78270 -8.65136 -6.87933 -5.74213 -3.06557 0.38244 0.81385 2.32070 2.81734 3.21452 3.41964 3.45781 3.46983 3.72239 3.75219 4.34018 4.44370 4.52775 4.78273 5.00773 5.03575 5.05352 5.20549 5.35036 5.39793 5.46588 5.57343 5.70985 5.80931 5.91726 6.05468 6.29315 6.38652 6.40542 6.59917 6.67726 6.79878 6.90806 7.24763 7.39996 7.60025 7.66846 7.87301 8.00305 8.32861 9.06262 9.73086 10.64612 11.42939 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.005191 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.224795 B = 5392.901207 C = 6678.289701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.285 6.285 3 C 0.500 3.500 4 N -0.559 5.559 5 C 0.186 3.814 6 C -0.214 4.214 7 C 0.180 3.820 8 C 0.564 3.436 9 O -0.533 6.533 10 N -0.683 5.683 11 C 0.118 3.882 12 C 0.126 3.874 13 H 0.050 0.950 14 C -0.160 4.160 15 C 0.152 3.848 16 N -0.601 5.601 17 C -0.213 4.213 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.907 3.093 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.286 1.286 25 N -0.497 5.497 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.180 0.820 30 H 0.164 0.836 31 H 0.417 0.583 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 8.927 -9.732 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.186 6.186 3 C 0.197 3.803 4 N -0.289 5.289 5 C 0.020 3.980 6 C -0.237 4.237 7 C 0.031 3.969 8 C 0.346 3.654 9 O -0.410 6.410 10 N -0.332 5.332 11 C -0.007 4.007 12 C 0.018 3.982 13 H 0.068 0.932 14 C -0.199 4.199 15 C 0.026 3.974 16 N -0.326 5.326 17 C -0.340 4.340 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.737 3.263 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 N -0.225 5.225 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.197 0.803 30 H 0.182 0.818 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.135 8.292 -9.382 17.436 hybrid contribution -0.921 0.220 0.821 1.253 sum -13.056 8.512 -8.561 17.782 Atomic orbital electron populations 1.23011 0.75631 1.03734 1.02714 1.86161 1.23341 1.22232 1.86836 1.20566 0.85699 0.84923 0.89119 1.67999 1.41617 0.99416 1.19837 1.23050 0.92222 0.94422 0.88342 1.22791 0.95508 1.01111 1.04314 1.21640 0.95380 0.87888 0.91975 1.17692 0.84405 0.84971 0.78306 1.90771 1.70089 1.29118 1.51023 1.45926 1.08199 1.08872 1.70249 1.21986 0.77599 0.99344 1.01723 1.22440 0.94001 0.90771 0.90979 0.93246 1.23665 0.94727 1.01523 0.99977 1.22028 0.87321 0.91785 0.96257 1.45675 1.19761 1.52898 1.14302 1.18824 0.97569 1.23424 0.94170 0.90217 1.24744 0.97703 0.99428 0.98367 1.69816 1.24629 1.32928 1.29224 0.86277 0.80800 0.77417 0.81790 1.21086 1.21537 1.21233 1.67498 1.08265 1.29335 1.17394 0.91852 0.91910 0.87724 0.80277 0.81814 0.74619 0.90544 0.91710 0.92297 0.90156 0.90949 0.95685 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.36 101.05 1.05 1.46 16 2 O -0.28 -4.06 10.55 -18.11 -0.19 -4.25 16 3 C 0.50 7.51 8.48 -91.36 -0.77 6.73 16 4 N -0.56 -6.95 9.20 -14.74 -0.14 -7.09 16 5 C 0.19 1.86 11.30 -17.21 -0.19 1.67 16 6 C -0.21 -2.56 9.71 -38.92 -0.38 -2.93 16 7 C 0.18 2.80 6.79 -82.65 -0.56 2.24 16 8 C 0.56 9.91 7.83 -12.05 -0.09 9.82 16 9 O -0.53 -10.14 16.42 5.39 0.09 -10.05 16 10 N -0.68 -12.41 5.32 -61.05 -0.33 -12.73 16 11 C 0.12 2.13 5.52 -4.04 -0.02 2.11 16 12 C 0.13 2.45 4.10 -72.40 -0.30 2.15 16 13 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 14 C -0.16 -2.89 8.03 -26.22 -0.21 -3.10 16 15 C 0.15 3.49 7.39 -8.50 -0.06 3.43 16 16 N -0.60 -14.86 3.65 -176.99 -0.65 -15.50 16 17 C -0.21 -5.85 10.55 -15.06 -0.16 -6.01 16 18 H 0.08 2.15 7.51 -52.49 -0.39 1.76 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -27.32 11.51 55.49 0.64 -26.68 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 N -0.50 -8.27 9.73 -11.29 -0.11 -8.38 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.16 1.68 7.73 -52.48 -0.41 1.27 16 31 H 0.42 7.85 7.76 -40.82 -0.32 7.54 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 36 H 0.07 1.86 7.13 -51.93 -0.37 1.49 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -33.56 332.48 -7.34 -40.90 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.84 Total: 3.79 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: -1.80 Total: 17.30 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -0.58 Total: -70.37 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.10 Total: -14.31 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.56 -7.34 -40.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038498145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.663 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds