Wall clock time and date at job start Tue Mar 31 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35473 * 117.00145 * 2 1 4 4 N 1.32425 * 119.11060 * 0.02562 * 3 2 1 5 5 C 1.32136 * 120.97328 * 180.02562 * 4 3 2 6 6 C 1.38806 * 119.21765 * 359.72478 * 5 4 3 7 7 C 1.39458 * 118.38951 * 0.51554 * 6 5 4 8 8 C 1.48462 * 120.51501 * 179.75444 * 7 6 5 9 9 O 1.21473 * 119.99933 * 359.73124 * 8 7 6 10 10 N 1.34779 * 119.99815 * 179.72392 * 8 7 6 11 11 C 1.46504 * 119.99668 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46966 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.77951 * 56.27255 * 12 11 10 14 14 C 1.53492 * 113.46722 * 187.05955 * 12 11 10 15 15 C 1.53503 * 83.34380 * 140.84700 * 14 12 11 16 16 N 1.47066 * 113.46558 * 285.49627 * 12 11 10 17 17 C 1.36937 * 136.06113 * 37.83696 * 16 12 11 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 12 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 12 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47363 * 60.00463 * 21 19 17 23 23 H 1.48506 * 109.46719 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47174 * 300.00290 * 21 19 17 25 25 N 1.32084 * 119.11498 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47662 * 300.00477 * 1 2 3 27 27 H 1.08999 * 109.47206 * 60.00389 * 1 2 3 28 28 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.39000 * 180.02562 * 5 4 3 30 30 H 1.08011 * 120.80104 * 180.29682 * 6 5 4 31 31 H 0.96999 * 119.99977 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.47023 * 59.99980 * 11 10 8 33 33 H 1.09003 * 109.47215 * 299.99892 * 11 10 8 34 34 H 1.08996 * 114.20649 * 254.43356 * 14 12 11 35 35 H 1.08998 * 114.21061 * 27.06495 * 14 12 11 36 36 H 1.09003 * 113.46532 * 219.15331 * 15 14 12 37 37 H 1.09000 * 113.46688 * 88.71677 * 15 14 12 38 38 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3056 2.3064 0.0005 5 6 1.8669 3.5026 0.0000 6 6 3.2515 3.6013 0.0048 7 6 4.0002 2.4247 -0.0011 8 6 5.4839 2.4754 -0.0019 9 8 6.0550 3.5475 -0.0023 10 7 6.1972 1.3318 -0.0020 11 6 7.6614 1.3818 -0.0022 12 6 8.2203 -0.0424 -0.0029 13 1 7.8549 -0.6388 -0.8390 14 6 9.7443 -0.1011 0.1699 15 6 9.4189 -1.3182 1.0468 16 7 8.0989 -0.7198 1.2968 17 6 7.1689 -0.7676 2.3007 18 1 6.2541 -0.1999 2.2169 19 6 7.4014 -1.5467 3.4259 20 7 8.5162 -2.2391 3.5279 21 14 6.1324 -1.6124 4.7950 22 1 4.8502 -2.1333 4.2569 23 1 6.6165 -2.5083 5.8760 24 1 5.9221 -0.2475 5.3410 25 7 3.3639 1.2558 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.2557 4.3929 0.0009 30 1 3.7371 4.5661 0.0093 31 1 5.7411 0.4757 -0.0019 32 1 8.0071 1.9078 0.8878 33 1 8.0069 1.9078 -0.8922 34 1 10.2887 -0.3411 -0.7434 35 1 10.1655 0.7450 0.7128 36 1 10.0399 -1.3882 1.9399 37 1 9.3729 -2.2543 0.4903 38 1 8.6788 -2.7832 4.3142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038498145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:31 Heat of formation + Delta-G solvation = 23.385502 kcal Electronic energy + Delta-G solvation = -23099.281261 eV Core-core repulsion = 19558.173118 eV Total energy + Delta-G solvation = -3541.108144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.51394 -40.85082 -39.82445 -39.16349 -35.78398 -35.01113 -34.23716 -32.64121 -30.02823 -29.52177 -28.46503 -26.46545 -25.39563 -24.96680 -23.54283 -22.06617 -21.06881 -20.03512 -19.33432 -18.60616 -17.94161 -17.60012 -17.12523 -17.02273 -16.60150 -16.32990 -15.85896 -15.70086 -15.52497 -15.07947 -14.98280 -14.68665 -14.49187 -13.65635 -13.35212 -12.98511 -12.97100 -12.72943 -12.62550 -12.41072 -12.36405 -12.35108 -12.07231 -11.91499 -11.69658 -11.58600 -11.05259 -10.85048 -10.44448 -10.25759 -10.07940 -8.89384 -7.88944 -5.19718 -0.69071 -0.11681 1.38048 1.39727 1.41779 1.47678 1.57254 1.95836 2.44832 2.65030 2.84291 3.22645 3.32943 3.43944 3.55633 3.82315 3.92944 4.08908 4.17867 4.34273 4.35740 4.37999 4.55175 4.63016 4.68324 4.69604 4.88488 4.96097 5.07128 5.08584 5.26966 5.32950 5.45505 5.58937 5.74536 5.97264 5.99115 6.33035 6.77704 6.93361 6.96718 7.63028 8.62806 9.28309 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.005191 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.224795 B = 5392.901207 C = 6678.289701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.485 3.515 4 N -0.552 5.552 5 C 0.204 3.796 6 C -0.202 4.202 7 C 0.151 3.849 8 C 0.564 3.436 9 O -0.552 6.552 10 N -0.690 5.690 11 C 0.126 3.874 12 C 0.129 3.871 13 H 0.066 0.934 14 C -0.129 4.129 15 C 0.142 3.858 16 N -0.630 5.630 17 C -0.205 4.205 18 H 0.078 0.922 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.963 3.037 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.284 1.284 25 N -0.533 5.533 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.235 0.765 30 H 0.183 0.817 31 H 0.412 0.588 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.021 0.979 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 10.817 -10.998 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.182 3.818 4 N -0.282 5.282 5 C 0.037 3.963 6 C -0.225 4.225 7 C 0.005 3.995 8 C 0.348 3.652 9 O -0.430 6.430 10 N -0.339 5.339 11 C 0.002 3.998 12 C 0.023 3.977 13 H 0.083 0.917 14 C -0.168 4.168 15 C 0.017 3.983 16 N -0.356 5.356 17 C -0.334 4.334 18 H 0.096 0.904 19 C -0.260 4.260 20 N -0.600 5.600 21 Si 0.792 3.208 22 H -0.208 1.208 23 H -0.218 1.218 24 H -0.210 1.210 25 N -0.262 5.262 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.251 0.749 30 H 0.201 0.799 31 H 0.248 0.752 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.845 10.198 -10.683 20.244 hybrid contribution -0.474 -0.299 1.127 1.259 sum -14.319 9.900 -9.556 19.858 Atomic orbital electron populations 1.23304 0.73350 1.05478 1.03351 1.86124 1.25702 1.22580 1.86847 1.20732 0.85494 0.85835 0.89737 1.68143 1.41092 0.99589 1.19410 1.23973 0.91891 0.95149 0.85304 1.23098 0.96318 1.00517 1.02561 1.21446 0.94311 0.89135 0.94657 1.18004 0.85535 0.84339 0.77315 1.90743 1.70910 1.29465 1.51920 1.45960 1.08179 1.09017 1.70722 1.21822 0.77903 0.98233 1.01848 1.22606 0.95190 0.91070 0.88871 0.91715 1.23464 0.94166 0.98727 1.00399 1.22063 0.86526 0.93816 0.95920 1.45995 1.19892 1.53757 1.15920 1.19075 0.97653 1.21865 0.94802 0.90385 1.25447 0.99525 1.00292 1.00713 1.69983 1.26242 1.34273 1.29526 0.85382 0.78842 0.77175 0.79387 1.20783 1.21753 1.21015 1.67320 1.09575 1.30327 1.19002 0.91490 0.90864 0.85549 0.74854 0.79946 0.75179 0.92883 0.88991 0.88009 0.89785 0.94394 0.96090 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.36 113.37 1.17 1.85 16 2 O -0.31 -8.72 10.55 -87.72 -0.93 -9.65 16 3 C 0.48 14.14 8.48 180.61 1.53 15.67 16 4 N -0.55 -12.35 9.20 -313.44 -2.88 -15.24 16 5 C 0.20 3.31 11.30 84.78 0.96 4.27 16 6 C -0.20 -4.31 9.71 22.70 0.22 -4.09 16 7 C 0.15 4.58 6.79 41.97 0.29 4.86 16 8 C 0.56 19.61 7.83 86.97 0.68 20.29 16 9 O -0.55 -20.54 16.42 -3.63 -0.06 -20.60 16 10 N -0.69 -24.94 5.32 -465.36 -2.48 -27.42 16 11 C 0.13 4.44 5.52 86.38 0.48 4.92 16 12 C 0.13 4.87 4.10 41.79 0.17 5.04 16 13 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 14 C -0.13 -4.41 8.03 30.93 0.25 -4.16 16 15 C 0.14 6.60 7.39 83.18 0.61 7.21 16 16 N -0.63 -31.40 3.65 -713.88 -2.61 -34.01 16 17 C -0.21 -11.51 10.55 84.03 0.89 -10.62 16 18 H 0.08 4.30 7.51 -2.91 -0.02 4.27 16 19 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 20 N -0.95 -58.28 11.51 21.65 0.25 -58.03 16 21 Si 0.96 47.74 29.55 68.60 2.03 49.77 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 25 N -0.53 -17.66 9.73 -302.70 -2.94 -20.61 16 26 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 27 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 28 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.24 1.14 8.06 -2.91 -0.02 1.11 16 30 H 0.18 3.16 7.73 -2.90 -0.02 3.14 16 31 H 0.41 15.71 7.76 -92.71 -0.72 14.99 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.08 2.84 8.12 -2.39 -0.02 2.82 16 36 H 0.04 2.00 7.13 -2.39 -0.02 1.99 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -75.48 332.48 -1.54 -77.02 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.37 Total: 16.97 kcal Atomic # 6 Polarization: 34.09 SS G_CDS: 7.72 Total: 41.81 kcal Atomic # 7 Polarization: -144.65 SS G_CDS: -10.66 Total: -155.31 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.99 Total: -30.25 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -75.48 -1.54 -77.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038498145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.405 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds