Wall clock time and date at job start Tue Mar 31 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28391 * 119.09801 * 2 1 4 4 C 1.31401 * 122.26554 * 180.02562 * 3 2 1 5 5 C 1.47886 * 119.89669 * 179.97438 * 4 3 2 6 6 O 1.21553 * 120.00294 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99723 * 359.71599 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27520 * 7 5 4 9 9 C 1.52997 * 109.47551 * 180.02562 * 8 7 5 10 10 H 1.09000 * 112.96239 * 53.32023 * 9 8 7 11 11 C 1.53946 * 113.77153 * 185.00460 * 9 8 7 12 12 C 1.53942 * 86.28846 * 137.90511 * 11 9 8 13 13 N 1.47577 * 86.12298 * 336.39146 * 12 11 9 14 14 C 1.36939 * 134.49819 * 204.64524 * 13 12 11 15 15 H 1.07997 * 120.00169 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99291 * 359.97438 * 14 13 12 17 17 N 1.31617 * 120.00885 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99595 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47118 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46815 * 119.99817 * 18 16 14 21 21 H 1.48496 * 109.47365 * 240.00009 * 18 16 14 22 22 C 1.41583 * 120.21073 * 0.24433 * 4 3 2 23 23 C 1.36328 * 118.23732 * 359.52880 * 22 4 3 24 24 C 1.34607 * 119.10400 * 180.02562 * 2 1 3 25 25 O 1.21989 * 120.22200 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.47352 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47105 * 120.00167 * 1 2 3 28 28 H 1.09001 * 109.47111 * 239.99782 * 1 2 3 29 29 H 0.97001 * 119.99727 * 0.28417 * 7 5 4 30 30 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 31 31 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 32 32 H 1.08995 * 113.73647 * 252.25305 * 11 9 8 33 33 H 1.08998 * 113.74074 * 23.44905 * 11 9 8 34 34 H 1.09005 * 113.77133 * 90.69630 * 12 11 9 35 35 H 1.09007 * 113.76678 * 221.97630 * 12 11 9 36 36 H 0.96997 * 120.00541 * 180.02562 * 17 16 14 37 37 H 1.08005 * 120.87669 * 179.74659 * 22 4 3 38 38 H 1.08000 * 121.03318 * 180.20819 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1219 0.0000 4 6 3.4014 1.1945 -0.0005 5 6 4.0665 2.5153 -0.0010 6 8 5.2801 2.5847 -0.0010 7 7 3.3271 3.6421 -0.0068 8 6 3.9859 4.9506 -0.0135 9 6 2.9270 6.0549 -0.0185 10 1 2.2002 5.9508 0.7872 11 6 3.5104 7.4735 -0.1485 12 6 2.3550 7.7508 -1.1273 13 7 2.3205 6.2913 -1.3431 14 6 1.8962 5.4816 -2.3626 15 1 1.9833 4.4089 -2.2723 16 6 1.3542 6.0397 -3.5123 17 7 1.2485 7.3469 -3.6227 18 14 0.7748 4.9351 -4.9029 19 1 1.0012 3.5146 -4.5339 20 1 -0.6737 5.1591 -5.1421 21 1 1.5355 5.2535 -6.1378 22 6 4.1803 0.0122 -0.0063 23 6 3.5323 -1.1872 -0.0014 24 6 2.1197 -1.1761 -0.0005 25 8 1.4974 -2.2253 -0.0015 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5139 0.8900 29 1 2.3587 3.5867 -0.0064 30 1 4.6083 5.0485 0.8760 31 1 4.6083 5.0394 -0.9039 32 1 3.4561 8.0563 0.7710 33 1 4.4967 7.5016 -0.6118 34 1 1.4588 8.1456 -0.6486 35 1 2.6525 8.3200 -2.0081 36 1 0.8694 7.7368 -4.4259 37 1 5.2593 0.0593 -0.0108 38 1 4.0818 -2.1170 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038993587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:42 Heat of formation + Delta-G solvation = 57.301920 kcal Electronic energy + Delta-G solvation = -23206.060443 eV Core-core repulsion = 19666.423026 eV Total energy + Delta-G solvation = -3539.637417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.27650 -39.56440 -38.09275 -37.73610 -35.09852 -34.27139 -32.25212 -31.74038 -28.90570 -28.00147 -27.55515 -25.33478 -23.87536 -23.40257 -22.35660 -20.99824 -19.35920 -18.62486 -18.22781 -17.00213 -16.95372 -16.61156 -16.05150 -15.61249 -15.37924 -14.69807 -14.58194 -14.04305 -13.80764 -13.58325 -13.56852 -13.32376 -13.09297 -12.84199 -12.67765 -11.92822 -11.81713 -11.47624 -11.16376 -11.06665 -10.78409 -10.66992 -10.59541 -10.30348 -10.04792 -9.85321 -9.77036 -9.45776 -8.88992 -8.83664 -8.64172 -6.93085 -5.80032 -3.12486 0.24111 0.97975 1.90635 2.73945 3.18207 3.34543 3.40032 3.42571 3.46295 3.78341 4.38383 4.43920 4.55107 4.73326 4.98707 4.99802 5.09001 5.32903 5.33950 5.35399 5.44159 5.57137 5.60435 5.68799 5.79273 5.87031 6.00984 6.25368 6.36275 6.57097 6.62143 6.76015 7.21781 7.28086 7.37122 7.56477 7.61910 7.82597 7.94998 8.28958 9.01071 9.67794 10.55404 11.36700 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.004975 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.296601 B = 5626.261233 C = 6808.801811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.336 5.336 3 N -0.177 5.177 4 C 0.022 3.978 5 C 0.583 3.417 6 O -0.537 6.537 7 N -0.691 5.691 8 C 0.121 3.879 9 C 0.125 3.875 10 H 0.051 0.949 11 C -0.155 4.155 12 C 0.158 3.842 13 N -0.602 5.602 14 C -0.218 4.218 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.290 1.290 22 C -0.028 4.028 23 C -0.196 4.196 24 C 0.479 3.521 25 O -0.530 6.530 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.411 0.589 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.253 0.747 37 H 0.164 0.836 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -10.066 10.076 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.158 5.158 3 N -0.008 5.008 4 C -0.150 4.150 5 C 0.365 3.635 6 O -0.413 6.413 7 N -0.341 5.341 8 C -0.004 4.004 9 C 0.017 3.983 10 H 0.068 0.932 11 C -0.194 4.194 12 C 0.033 3.967 13 N -0.328 5.328 14 C -0.346 4.346 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.566 5.566 18 Si 0.736 3.264 19 H -0.207 1.207 20 H -0.218 1.218 21 H -0.217 1.217 22 C -0.051 4.051 23 C -0.226 4.226 24 C 0.278 3.722 25 O -0.408 6.408 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.247 0.753 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.182 0.818 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.052 -10.163 9.745 14.229 hybrid contribution -0.439 -1.209 -0.896 1.568 sum 1.613 -11.372 8.849 14.500 Atomic orbital electron populations 1.22279 0.73286 1.05844 1.04648 1.46777 1.10024 1.02588 1.56387 1.71173 1.11352 1.12436 1.05821 1.21914 0.88086 0.96619 1.08360 1.17183 0.86363 0.82272 0.77678 1.90797 1.12636 1.86411 1.51440 1.45864 1.11187 1.05513 1.71522 1.21906 0.96135 0.80447 1.01864 1.22519 0.92743 0.92718 0.90297 0.93169 1.23770 1.00517 0.95478 0.99620 1.22198 0.92263 0.86852 0.95351 1.46091 1.72372 1.02641 1.11729 1.18981 1.33790 0.89055 0.92736 0.90303 1.24739 1.01567 0.95812 0.98151 1.69818 1.50212 1.08642 1.27902 0.86154 0.78172 0.79478 0.82578 1.20660 1.21788 1.21719 1.22260 1.03126 0.90297 0.89444 1.22660 0.92642 1.00407 1.06878 1.18104 0.90155 0.83901 0.80059 1.90969 1.69374 1.29410 1.51040 0.87511 0.89195 0.89267 0.75286 0.91631 0.90447 0.92755 0.90425 0.95559 0.90809 0.93728 0.81826 0.81437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.20 59.85 0.61 1.36 16 2 N -0.34 -4.21 3.62 -70.15 -0.25 -4.46 16 3 N -0.18 -2.36 10.05 33.42 0.34 -2.03 16 4 C 0.02 0.30 6.84 -82.83 -0.57 -0.27 16 5 C 0.58 9.17 7.81 -12.31 -0.10 9.07 16 6 O -0.54 -9.52 16.38 5.32 0.09 -9.43 16 7 N -0.69 -11.07 5.52 -61.24 -0.34 -11.41 16 8 C 0.12 2.02 5.54 -4.04 -0.02 1.99 16 9 C 0.12 2.26 4.33 -66.86 -0.29 1.97 16 10 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.15 -2.67 7.86 -25.81 -0.20 -2.87 16 12 C 0.16 3.50 7.51 -2.98 -0.02 3.48 16 13 N -0.60 -14.08 3.58 -170.72 -0.61 -14.69 16 14 C -0.22 -5.68 10.51 -15.06 -0.16 -5.84 16 15 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 17 N -0.92 -26.39 11.39 55.49 0.63 -25.76 16 18 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.03 -0.31 9.68 -38.99 -0.38 -0.69 16 23 C -0.20 -2.15 10.11 -39.12 -0.40 -2.54 16 24 C 0.48 6.38 7.47 -15.19 -0.11 6.27 16 25 O -0.53 -8.28 17.07 4.93 0.08 -8.20 16 26 H 0.11 0.88 8.05 -51.93 -0.42 0.46 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.41 6.50 7.81 -40.82 -0.32 6.18 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.83 7.16 -51.93 -0.37 1.45 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.16 1.55 7.72 -52.48 -0.41 1.15 16 38 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -32.72 331.82 -6.68 -39.39 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.86 Total: 3.21 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -1.73 Total: 11.66 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.23 Total: -58.35 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.63 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.72 -6.68 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038993587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.697 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds