Wall clock time and date at job start Tue Mar 31 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42909 * 113.99985 * 2 1 4 4 H 1.08995 * 110.77576 * 26.76215 * 3 2 1 5 5 C 1.54316 * 110.71989 * 263.52400 * 3 2 1 6 6 N 1.47018 * 107.27165 * 219.44215 * 5 3 2 7 7 C 1.36940 * 125.65073 * 178.90189 * 6 5 3 8 8 H 1.08003 * 119.99620 * 180.02562 * 7 6 5 9 9 C 1.38803 * 120.00068 * 0.02562 * 7 6 5 10 10 N 1.31619 * 119.99934 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00246 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46999 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47278 * 120.00133 * 11 9 7 14 14 H 1.48505 * 109.46995 * 240.00271 * 11 9 7 15 15 C 1.47470 * 108.72355 * 358.97458 * 6 5 3 16 16 C 1.54911 * 104.80829 * 24.07012 * 15 6 5 17 17 H 1.09005 * 111.00086 * 81.13916 * 16 15 6 18 18 N 1.46496 * 111.00641 * 204.94708 * 16 15 6 19 19 C 1.34777 * 120.00258 * 270.42347 * 18 16 15 20 20 O 1.21512 * 119.99831 * 359.97438 * 19 18 16 21 21 C 1.48156 * 119.99966 * 180.02562 * 19 18 16 22 22 C 1.39444 * 120.09602 * 179.97438 * 21 19 18 23 23 N 1.32082 * 119.87128 * 179.97438 * 22 21 19 24 24 C 1.32138 * 120.06918 * 0.02562 * 23 22 21 25 25 C 1.38728 * 120.20020 * 359.97438 * 24 23 22 26 26 N 1.31804 * 120.12587 * 359.72911 * 25 24 23 27 27 H 1.08998 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47467 * 299.99628 * 1 2 3 29 29 H 1.08998 * 109.47250 * 60.00172 * 1 2 3 30 30 H 1.09007 * 109.88583 * 338.85780 * 5 3 2 31 31 H 1.09002 * 109.88398 * 100.02469 * 5 3 2 32 32 H 0.97009 * 120.00172 * 180.02562 * 10 9 7 33 33 H 1.08996 * 110.35319 * 265.25499 * 15 6 5 34 34 H 1.09003 * 110.40709 * 142.91581 * 15 6 5 35 35 H 0.96999 * 119.99694 * 90.41737 * 18 16 15 36 36 H 1.07995 * 120.06069 * 0.02562 * 22 21 19 37 37 H 1.08003 * 119.89451 * 180.02562 * 24 23 22 38 38 H 1.08000 * 119.93548 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3362 2.0288 0.4589 5 6 2.3810 1.7381 -1.4341 6 7 3.6684 2.4440 -1.3581 7 6 4.3546 2.9692 -2.4204 8 1 5.2972 3.4713 -2.2593 9 6 3.8388 2.8564 -3.7040 10 7 2.6899 2.2449 -3.9002 11 14 4.7745 3.5735 -5.1531 12 1 6.0279 4.2059 -4.6689 13 1 5.1050 2.4904 -6.1138 14 1 3.9342 4.5949 -5.8284 15 6 4.0997 2.4915 0.0513 16 6 3.3816 1.2959 0.7256 17 1 3.9156 0.3640 0.5395 18 7 3.2168 1.5251 2.1631 19 6 4.1768 1.1308 3.0229 20 8 5.1789 0.5847 2.6058 21 6 4.0098 1.3622 4.4767 22 6 5.0016 0.9546 5.3681 23 7 4.8484 1.1635 6.6633 24 6 3.7571 1.7572 7.1135 25 6 2.7686 2.1640 6.2293 26 7 2.9161 1.9646 4.9348 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.4768 0.8602 -2.0731 31 1 1.6152 2.4053 -1.8298 32 1 2.3296 2.1657 -4.7974 33 1 3.7887 3.4293 0.5116 34 1 5.1810 2.3734 0.1221 35 1 2.4167 1.9608 2.4961 36 1 5.8937 0.4697 5.0001 37 1 3.6349 1.9271 8.1731 38 1 1.8786 2.6492 6.6020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081298888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:47 Heat of formation + Delta-G solvation = -18.031179 kcal Electronic energy + Delta-G solvation = -23142.609971 eV Core-core repulsion = 19599.705866 eV Total energy + Delta-G solvation = -3542.904106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.30462 -40.87200 -39.56282 -37.53276 -35.92223 -35.28361 -33.69563 -32.71205 -30.58768 -29.00716 -27.54897 -26.74225 -25.88960 -25.36974 -22.73112 -22.18557 -21.68099 -19.60769 -18.97024 -18.54852 -17.86819 -17.75360 -17.20436 -16.55371 -16.52739 -16.23216 -15.82887 -15.66264 -15.33508 -15.21226 -15.02703 -14.51886 -14.11132 -13.85113 -13.63422 -13.26154 -13.00607 -12.80711 -12.77864 -12.60478 -12.40887 -12.33831 -12.03945 -11.88567 -11.70983 -11.55181 -10.79107 -10.67786 -10.53502 -10.23551 -10.14624 -8.98315 -7.88060 -5.26526 -0.69038 -0.01264 1.46017 1.47729 1.57781 1.58619 1.78209 2.45480 2.71046 2.73789 2.86170 3.18619 3.31640 3.37908 3.48096 3.66618 3.85306 3.88904 4.05538 4.10628 4.30950 4.35794 4.42039 4.54495 4.58205 4.63736 4.79631 4.86263 4.90947 5.25063 5.28805 5.34976 5.40993 5.64712 6.02472 6.12270 6.28477 6.31810 6.62966 6.98264 7.04191 7.68282 8.30854 9.21634 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022368 B = 0.003795 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.500170 B = 7376.088418 C = 8186.784802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.077 3.923 4 H 0.095 0.905 5 C 0.176 3.824 6 N -0.621 5.621 7 C -0.248 4.248 8 H 0.084 0.916 9 C -0.061 4.061 10 N -0.948 5.948 11 Si 0.982 3.018 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.288 1.288 15 C 0.132 3.868 16 C 0.147 3.853 17 H 0.082 0.918 18 N -0.681 5.681 19 C 0.573 3.427 20 O -0.562 6.562 21 C 0.014 3.986 22 C 0.101 3.899 23 N -0.459 5.459 24 C 0.087 3.913 25 C 0.060 3.940 26 N -0.427 5.427 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.020 0.980 31 H 0.024 0.976 32 H 0.249 0.751 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.419 0.581 36 H 0.177 0.823 37 H 0.222 0.778 38 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.617 0.063 23.177 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.018 3.982 4 H 0.113 0.887 5 C 0.050 3.950 6 N -0.349 5.349 7 C -0.376 4.376 8 H 0.102 0.898 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.810 3.190 12 H -0.191 1.191 13 H -0.219 1.219 14 H -0.214 1.214 15 C 0.005 3.995 16 C 0.041 3.959 17 H 0.100 0.900 18 N -0.332 5.332 19 C 0.358 3.642 20 O -0.440 6.440 21 C -0.125 4.125 22 C -0.056 4.056 23 N -0.174 5.174 24 C -0.075 4.075 25 C -0.103 4.103 26 N -0.145 5.145 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.257 0.743 36 H 0.194 0.806 37 H 0.238 0.762 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -4.778 -0.503 22.586 23.091 hybrid contribution -0.079 0.558 -1.248 1.369 sum -4.857 0.054 21.338 21.884 Atomic orbital electron populations 1.22998 0.79242 1.03960 1.00790 1.87890 1.21853 1.26880 1.94935 1.23481 0.93425 0.85333 0.95958 0.88682 1.21288 0.87184 0.94814 0.91710 1.44535 1.21969 1.66460 1.01926 1.19496 1.02726 1.29575 0.85804 0.89842 1.25678 0.98446 1.01379 0.99966 1.70166 1.20498 1.48332 1.20658 0.84960 0.77948 0.77236 0.78846 1.19094 1.21912 1.21434 1.21920 0.97435 0.95470 0.84669 1.21974 0.96143 0.98844 0.78950 0.90021 1.45535 1.22476 1.59810 1.05380 1.18072 0.82807 0.78062 0.85300 1.90803 1.30186 1.44190 1.78841 1.21727 0.94540 1.01787 0.94433 1.23779 0.98758 0.94173 0.88938 1.68711 1.23278 1.11461 1.13924 1.24959 0.88144 0.89903 1.04499 1.24679 1.01670 0.96503 0.87494 1.68325 1.19534 1.08299 1.18329 0.88050 0.91854 0.94425 0.96170 0.95791 0.94174 0.94167 0.94203 0.74274 0.80608 0.76157 0.76082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.40 -14.61 10.43 -148.98 -1.55 -16.16 16 3 C 0.08 2.95 3.08 31.78 0.10 3.05 16 4 H 0.10 3.05 7.68 -2.39 -0.02 3.03 16 5 C 0.18 8.88 5.15 86.73 0.45 9.32 16 6 N -0.62 -33.08 3.40 -691.89 -2.35 -35.43 16 7 C -0.25 -14.26 10.28 84.03 0.86 -13.39 16 8 H 0.08 4.63 7.83 -2.91 -0.02 4.60 16 9 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 10 N -0.95 -57.34 10.31 21.65 0.22 -57.11 16 11 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 C 0.13 5.78 6.93 86.85 0.60 6.38 16 16 C 0.15 5.68 3.09 46.38 0.14 5.82 16 17 H 0.08 3.62 7.63 -2.38 -0.02 3.61 16 18 N -0.68 -20.87 5.21 -438.54 -2.28 -23.15 16 19 C 0.57 18.12 7.81 86.88 0.68 18.80 16 20 O -0.56 -21.79 16.04 -3.75 -0.06 -21.85 16 21 C 0.01 0.34 6.75 41.89 0.28 0.62 16 22 C 0.10 2.28 10.77 84.95 0.92 3.19 16 23 N -0.46 -8.41 10.49 -194.12 -2.04 -10.45 16 24 C 0.09 0.88 11.23 84.76 0.95 1.83 16 25 C 0.06 0.63 11.22 84.81 0.95 1.58 16 26 N -0.43 -8.19 9.71 -184.32 -1.79 -9.98 16 27 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.02 1.17 7.30 -2.38 -0.02 1.16 16 31 H 0.02 1.31 7.51 -2.39 -0.02 1.29 16 32 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.42 10.62 7.89 -92.71 -0.73 9.89 16 36 H 0.18 4.01 7.65 -2.91 -0.02 3.98 16 37 H 0.22 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.22 0.21 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -77.20 327.71 0.16 -77.03 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.36 Total: 12.63 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 7.63 Total: 36.05 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -8.24 Total: -136.13 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.61 Total: -38.01 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -77.20 0.16 -77.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081298888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.003 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds