Wall clock time and date at job start Tue Mar 31 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99761 * 2 1 4 4 C 1.52989 * 109.47204 * 83.99952 * 3 2 1 5 5 H 1.09004 * 112.96701 * 291.17975 * 4 3 2 6 6 C 1.53945 * 113.77276 * 62.86605 * 4 3 2 7 7 C 1.53942 * 86.29430 * 137.90873 * 6 4 3 8 8 N 1.47581 * 86.11485 * 336.39343 * 7 6 4 9 9 C 1.36936 * 134.49264 * 204.64070 * 8 7 6 10 10 H 1.08002 * 120.00353 * 184.92086 * 9 8 7 11 11 C 1.38815 * 120.00068 * 4.91899 * 9 8 7 12 12 N 1.31618 * 119.99670 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00111 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47054 * 60.00142 * 13 11 9 15 15 H 1.48500 * 109.47376 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47292 * 300.00315 * 13 11 9 17 17 C 1.34779 * 120.00270 * 180.27155 * 2 1 3 18 18 O 1.21510 * 120.00187 * 184.00435 * 17 2 1 19 19 C 1.48153 * 119.99719 * 4.00533 * 17 2 1 20 20 C 1.39891 * 121.12228 * 23.83051 * 19 17 2 21 21 N 1.31778 * 119.78671 * 179.70627 * 20 19 17 22 22 N 1.28273 * 122.41221 * 0.59559 * 21 20 19 23 23 C 1.32280 * 122.44410 * 359.69293 * 22 21 20 24 24 O 1.35697 * 120.08766 * 179.97438 * 23 22 21 25 25 C 1.39244 * 119.83393 * 359.97438 * 23 22 21 26 26 H 1.09000 * 109.46851 * 84.01576 * 1 2 3 27 27 H 1.09000 * 109.46983 * 204.01119 * 1 2 3 28 28 H 1.08995 * 109.47221 * 324.01144 * 1 2 3 29 29 H 1.09002 * 109.46670 * 203.99895 * 3 2 1 30 30 H 1.09003 * 109.47029 * 323.99872 * 3 2 1 31 31 H 1.09003 * 113.73588 * 252.25276 * 6 4 3 32 32 H 1.08992 * 113.74024 * 23.44987 * 6 4 3 33 33 H 1.08999 * 113.77043 * 90.68824 * 7 6 4 34 34 H 1.08997 * 113.76953 * 221.98435 * 7 6 4 35 35 H 0.97002 * 119.99901 * 179.97438 * 12 11 9 36 36 H 1.07999 * 120.11179 * 359.97438 * 20 19 17 37 37 H 0.96704 * 113.99768 * 270.02187 * 24 23 22 38 38 H 1.07997 * 121.11893 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3219 1.7858 1.4345 5 1 1.3686 2.1051 1.8557 6 6 3.1300 0.8587 2.3604 7 6 3.7795 2.1408 2.9118 8 7 3.4142 2.7601 1.6230 9 6 3.8955 3.8151 0.8946 10 1 3.3896 4.1234 -0.0084 11 6 5.0336 4.4884 1.3169 12 7 5.6504 4.1124 2.4172 13 14 5.6906 5.9270 0.3229 14 1 4.6547 6.9881 0.2438 15 1 6.9062 6.4694 0.9811 16 1 6.0334 5.4669 -1.0467 17 6 2.1390 -1.1672 -0.0055 18 8 3.3519 -1.1688 0.0679 19 6 1.4009 -2.4482 -0.1012 20 6 0.1225 -2.5056 -0.6662 21 7 -0.5079 -3.6603 -0.7432 22 7 0.0024 -4.7528 -0.3057 23 6 1.2017 -4.8032 0.2501 24 8 1.6950 -5.9856 0.6973 25 6 1.9567 -3.6399 0.3751 26 1 -0.3633 0.1071 -1.0221 27 1 -0.3633 -0.9387 0.4182 28 1 -0.3633 0.8315 0.6038 29 1 3.1922 1.1140 -0.4180 30 1 1.6591 1.9991 -0.6041 31 1 2.5195 0.3272 3.0905 32 1 3.8238 0.2059 1.8309 33 1 3.2552 2.5659 3.7677 34 1 4.8544 2.0552 3.0711 35 1 6.4459 4.5826 2.7121 36 1 -0.3447 -1.6073 -1.0419 37 1 1.4768 -6.1793 1.6193 38 1 2.9380 -3.6572 0.8258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085657569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:51 Heat of formation + Delta-G solvation = 74.769944 kcal Electronic energy + Delta-G solvation = -23256.169647 eV Core-core repulsion = 19717.289700 eV Total energy + Delta-G solvation = -3538.879947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.75598 -39.89010 -38.01660 -37.71860 -35.69647 -33.63804 -32.18104 -31.81455 -28.87021 -27.84646 -27.21775 -25.36053 -24.64295 -23.30075 -22.51607 -20.42769 -19.03963 -19.00022 -18.57847 -17.11571 -16.95100 -16.58982 -16.27145 -15.94623 -15.42139 -14.71138 -14.50324 -14.08482 -13.98225 -13.81632 -13.56293 -13.24407 -12.77330 -12.53214 -12.40298 -12.07502 -11.50359 -11.44800 -11.07716 -10.90488 -10.70455 -10.65203 -10.54773 -10.38291 -10.08463 -9.86241 -9.74398 -9.70460 -9.56490 -8.77618 -8.56876 -6.87091 -5.74934 -3.09236 -0.01988 0.34590 2.49707 2.62872 2.97759 3.24218 3.39173 3.43140 3.44742 3.81002 3.92778 4.11906 4.44365 4.46817 4.58330 4.83158 5.06066 5.07339 5.18016 5.39607 5.41271 5.44399 5.51908 5.54854 5.78635 5.85551 6.03214 6.29278 6.41643 6.55653 6.67714 6.75428 6.88450 7.22291 7.26815 7.49738 7.62790 7.97235 8.01297 8.20546 9.04190 9.71619 10.60940 11.40829 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031387 B = 0.003495 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.874670 B = 8008.543244 C = 8332.388078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.595 5.595 3 C 0.115 3.885 4 C 0.128 3.872 5 H 0.043 0.957 6 C -0.159 4.159 7 C 0.155 3.845 8 N -0.598 5.598 9 C -0.227 4.227 10 H 0.077 0.923 11 C -0.005 4.005 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.554 3.446 18 O -0.506 6.506 19 C -0.105 4.105 20 C 0.039 3.961 21 N -0.217 5.217 22 N -0.249 5.249 23 C 0.257 3.743 24 O -0.471 6.471 25 C -0.079 4.079 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.021 0.979 34 H 0.078 0.922 35 H 0.254 0.746 36 H 0.199 0.801 37 H 0.408 0.592 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 -14.468 -2.338 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.328 5.328 3 C -0.008 4.008 4 C 0.019 3.981 5 H 0.060 0.940 6 C -0.197 4.197 7 C 0.030 3.970 8 N -0.325 5.325 9 C -0.354 4.354 10 H 0.095 0.905 11 C -0.202 4.202 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.339 3.661 18 O -0.381 6.381 19 C -0.120 4.120 20 C -0.126 4.126 21 N -0.061 5.061 22 N -0.101 5.101 23 C 0.071 3.929 24 O -0.276 6.276 25 C -0.110 4.110 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.215 0.785 37 H 0.267 0.733 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.685 -15.098 -3.333 19.999 hybrid contribution 1.325 1.726 0.507 2.234 sum -11.360 -13.372 -2.826 17.772 Atomic orbital electron populations 1.22467 0.80122 1.04016 1.02059 1.47691 1.06774 1.06314 1.72026 1.21990 0.97873 0.81634 0.99298 1.22515 0.92877 0.90009 0.92655 0.94018 1.23839 0.99536 0.97784 0.98559 1.22268 1.00206 0.86686 0.87828 1.45886 1.33086 1.33538 1.19942 1.18924 1.06560 1.05679 1.04272 0.90490 1.24781 0.97733 0.99877 0.97786 1.69814 1.20857 1.42399 1.23376 0.86229 0.78259 0.82099 0.79311 1.21241 1.21559 1.21039 1.17875 0.87151 0.82802 0.78257 1.90859 1.12821 1.86378 1.48007 1.21351 0.95653 0.95725 0.99245 1.25545 0.91971 0.99744 0.95303 1.73116 1.27262 0.94350 1.11345 1.72755 1.09981 1.20173 1.07236 1.20758 0.90258 0.86000 0.95907 1.84819 1.74462 1.34241 1.34093 1.22802 1.01936 0.90321 0.95903 0.91434 0.90233 0.89937 0.88375 0.90855 0.94156 0.89409 0.96100 0.90419 0.93610 0.78507 0.73330 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 8.74 59.85 0.52 0.98 16 2 N -0.60 -7.61 2.76 -182.58 -0.50 -8.11 16 3 C 0.11 1.90 5.43 -4.05 -0.02 1.88 16 4 C 0.13 2.48 4.59 -66.87 -0.31 2.17 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 6 C -0.16 -3.14 7.22 -25.81 -0.19 -3.33 16 7 C 0.16 3.73 7.64 -2.98 -0.02 3.71 16 8 N -0.60 -15.05 3.57 -170.78 -0.61 -15.66 16 9 C -0.23 -6.22 10.51 -15.06 -0.16 -6.38 16 10 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 11 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 12 N -0.92 -27.30 11.30 55.49 0.63 -26.67 16 13 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 C 0.55 7.74 7.13 -12.19 -0.09 7.66 16 18 O -0.51 -9.13 14.43 5.36 0.08 -9.05 16 19 C -0.11 -1.18 5.55 -104.60 -0.58 -1.76 16 20 C 0.04 0.37 8.87 -16.96 -0.15 0.22 16 21 N -0.22 -2.47 11.48 30.79 0.35 -2.12 16 22 N -0.25 -2.98 11.50 30.49 0.35 -2.63 16 23 C 0.26 2.66 7.85 -16.98 -0.13 2.52 16 24 O -0.47 -3.89 13.57 -18.80 -0.26 -4.15 16 25 C -0.08 -0.83 9.73 -38.60 -0.38 -1.21 16 26 H 0.07 0.39 7.25 -51.93 -0.38 0.01 16 27 H 0.08 0.54 4.97 -51.93 -0.26 0.28 16 28 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.10 1.96 7.30 -51.93 -0.38 1.58 16 30 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.87 6.31 -51.93 -0.33 1.54 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 2.09 6.95 -51.93 -0.36 1.73 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.20 1.33 4.46 -52.49 -0.23 1.10 16 37 H 0.41 1.15 9.06 45.56 0.41 1.56 16 38 H 0.17 1.65 7.96 -52.49 -0.42 1.23 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -35.17 319.32 -5.37 -40.53 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -3.60 Total: -0.17 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.60 Total: 6.23 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.22 Total: -55.20 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.18 Total: -13.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.17 -5.37 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085657569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.303 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds