Wall clock time and date at job start Tue Mar 31 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99837 * 2 1 4 4 C 1.52996 * 109.47570 * 262.59439 * 3 2 1 5 5 H 1.09002 * 112.95957 * 305.80580 * 4 3 2 6 6 C 1.53944 * 113.77184 * 174.12610 * 4 3 2 7 7 C 1.53947 * 86.28944 * 222.09213 * 6 4 3 8 8 N 1.47581 * 113.76908 * 77.62710 * 4 3 2 9 9 C 1.36934 * 134.49553 * 318.94617 * 8 4 3 10 10 H 1.08002 * 119.99702 * 327.65312 * 9 8 4 11 11 C 1.38811 * 120.00236 * 147.64590 * 9 8 4 12 12 N 1.31616 * 120.00436 * 173.34227 * 11 9 8 13 13 Si 1.86800 * 119.99715 * 353.34335 * 11 9 8 14 14 H 1.48503 * 109.47183 * 87.46833 * 13 11 9 15 15 H 1.48504 * 109.47363 * 207.46884 * 13 11 9 16 16 H 1.48500 * 109.47494 * 327.46731 * 13 11 9 17 17 C 1.34777 * 120.00109 * 180.02562 * 2 1 3 18 18 O 1.21589 * 119.99924 * 177.82204 * 17 2 1 19 19 C 1.47529 * 120.00069 * 357.55068 * 17 2 1 20 20 C 1.39810 * 120.97807 * 334.87223 * 19 17 2 21 21 N 1.32186 * 118.97915 * 179.97438 * 20 19 17 22 22 C 1.31935 * 121.14439 * 0.02562 * 21 20 19 23 23 N 1.31734 * 122.19463 * 0.02562 * 22 21 20 24 24 C 1.32770 * 120.87085 * 359.68804 * 23 22 21 25 25 O 1.35281 * 120.61798 * 180.28330 * 24 23 22 26 26 H 1.09001 * 109.47287 * 275.60304 * 1 2 3 27 27 H 1.09003 * 109.47252 * 35.60387 * 1 2 3 28 28 H 1.09007 * 109.47255 * 155.60485 * 1 2 3 29 29 H 1.08998 * 109.47141 * 22.59724 * 3 2 1 30 30 H 1.09004 * 109.46712 * 142.59413 * 3 2 1 31 31 H 1.08998 * 113.73923 * 336.43699 * 6 4 3 32 32 H 1.09000 * 113.73778 * 107.63951 * 6 4 3 33 33 H 1.08998 * 113.76683 * 137.90965 * 7 6 4 34 34 H 1.09002 * 113.76921 * 269.19460 * 7 6 4 35 35 H 0.97000 * 120.00298 * 180.02562 * 12 11 9 36 36 H 1.08001 * 120.51148 * 0.02562 * 20 19 17 37 37 H 1.07999 * 118.90715 * 179.97438 * 22 21 20 38 38 H 0.96702 * 113.99648 * 270.28498 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.6135 1.6176 -1.4304 5 1 3.1732 0.8189 -1.9171 6 6 3.2668 3.0049 -1.5658 7 6 2.4247 3.1662 -2.8443 8 7 1.5166 2.1648 -2.2522 9 6 0.1893 1.8642 -2.4043 10 1 -0.1485 0.8437 -2.3002 11 6 -0.7218 2.8711 -2.6921 12 7 -1.9726 2.5678 -2.9675 13 14 -0.1727 4.6565 -2.6886 14 1 0.3524 5.0156 -4.0304 15 1 -1.3284 5.5292 -2.3595 16 1 0.8943 4.8444 -1.6730 17 6 2.1389 -1.1672 -0.0005 18 8 3.3541 -1.1675 -0.0405 19 6 1.4023 -2.4443 0.0535 20 6 0.1224 -2.5138 0.6118 21 7 -0.5020 -3.6785 0.6393 22 6 0.0621 -4.7668 0.1514 23 7 1.2658 -4.7538 -0.3838 24 6 1.9655 -3.6280 -0.4597 25 8 3.1988 -3.6195 -1.0156 26 1 -0.3634 0.1003 1.0228 27 1 -0.3634 0.8356 -0.5983 28 1 -0.3634 -0.9360 -0.4245 29 1 1.5574 2.0578 0.3949 30 1 3.0861 1.1752 0.6243 31 1 2.9938 3.6981 -0.7701 32 1 4.3410 2.9682 -1.7474 33 1 1.9776 4.1542 -2.9542 34 1 2.9287 2.8246 -3.7484 35 1 -2.6092 3.2714 -3.1690 36 1 -0.3493 -1.6292 1.0138 37 1 -0.4805 -5.6997 0.1930 38 1 3.9143 -3.7901 -0.3879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085662213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:55 Heat of formation + Delta-G solvation = 45.742223 kcal Electronic energy + Delta-G solvation = -24078.281511 eV Core-core repulsion = 20538.142828 eV Total energy + Delta-G solvation = -3540.138683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.56823 -40.79885 -39.58496 -38.78680 -36.54415 -34.59302 -34.41059 -33.00570 -30.69899 -29.60237 -28.05157 -26.16541 -25.34248 -25.05573 -24.15949 -21.28233 -20.65582 -20.24971 -19.30578 -19.11250 -18.06278 -17.71743 -17.44492 -16.82744 -16.66092 -16.36928 -15.58857 -15.34691 -15.17718 -14.96229 -14.92233 -14.76285 -14.31067 -13.92317 -13.39783 -13.18769 -12.93886 -12.85854 -12.77112 -12.60607 -12.40938 -12.06308 -12.03825 -11.67894 -11.52996 -11.26630 -10.92821 -10.70896 -10.66109 -10.50976 -9.64199 -8.81566 -8.11676 -5.52166 -0.71266 -0.25869 1.35777 1.41743 1.52397 1.60515 1.95293 2.22062 2.46568 2.57151 2.98104 3.02216 3.18742 3.19996 3.32540 3.70225 3.82466 4.10580 4.16792 4.22016 4.36047 4.38805 4.50683 4.52790 4.66139 4.67628 4.82584 4.93046 5.00481 5.05711 5.18563 5.41765 5.52363 5.61591 5.68208 6.20919 6.33996 6.38242 6.58386 6.81368 7.00973 7.50170 8.40177 9.06778 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.005243 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.686497 B = 5338.840558 C = 6134.424374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.588 5.588 3 C 0.127 3.873 4 C 0.130 3.870 5 H 0.041 0.959 6 C -0.121 4.121 7 C 0.082 3.918 8 N -0.640 5.640 9 C -0.213 4.213 10 H 0.064 0.936 11 C -0.025 4.025 12 N -0.957 5.957 13 Si 0.950 3.050 14 H -0.294 1.294 15 H -0.312 1.312 16 H -0.242 1.242 17 C 0.565 3.435 18 O -0.558 6.558 19 C -0.273 4.273 20 C 0.190 3.810 21 N -0.537 5.537 22 C 0.339 3.661 23 N -0.558 5.558 24 C 0.408 3.592 25 O -0.474 6.474 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.261 0.739 36 H 0.210 0.790 37 H 0.245 0.755 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 -8.135 11.075 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.317 5.317 3 C 0.004 3.996 4 C 0.024 3.976 5 H 0.058 0.942 6 C -0.160 4.160 7 C -0.042 4.042 8 N -0.369 5.369 9 C -0.341 4.341 10 H 0.081 0.919 11 C -0.220 4.220 12 N -0.603 5.603 13 Si 0.780 3.220 14 H -0.222 1.222 15 H -0.241 1.241 16 H -0.166 1.166 17 C 0.352 3.648 18 O -0.438 6.438 19 C -0.282 4.282 20 C 0.025 3.975 21 N -0.252 5.252 22 C 0.053 3.947 23 N -0.283 5.283 24 C 0.219 3.781 25 O -0.285 6.285 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.226 0.774 37 H 0.261 0.739 38 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 6.903 -8.819 10.519 15.365 hybrid contribution 0.442 1.397 -0.619 1.591 sum 7.345 -7.422 9.900 14.389 Atomic orbital electron populations 1.22933 0.78594 1.05083 1.03341 1.47619 1.07830 1.05527 1.70739 1.21798 0.97112 0.84088 0.96649 1.22764 0.87884 0.95407 0.91577 0.94179 1.23431 0.99318 0.95939 0.97291 1.23100 0.91174 0.93347 0.96586 1.46517 1.03817 1.40355 1.46206 1.18498 0.80475 0.92911 1.42238 0.91893 1.25761 0.94667 1.01575 1.00044 1.69855 1.04118 1.33679 1.52669 0.85806 0.76385 0.81306 0.78463 1.22156 1.24075 1.16626 1.17825 0.86764 0.83305 0.76862 1.90708 1.13789 1.87472 1.51856 1.21960 1.00510 0.96321 1.09456 1.24752 0.87683 0.97371 0.87737 1.68617 1.36692 0.99547 1.20382 1.25922 0.86058 0.98347 0.84341 1.68216 1.11117 1.29344 1.19658 1.19589 0.87581 0.87037 0.83851 1.84560 1.12921 1.92883 1.38157 0.88940 0.88800 0.91176 0.89090 0.88787 0.88770 0.88847 0.94340 0.93723 0.92998 0.77439 0.73879 0.70609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 7.85 127.77 1.00 2.31 16 2 N -0.59 -19.11 2.89 -850.54 -2.46 -21.57 16 3 C 0.13 4.05 5.21 86.38 0.45 4.50 16 4 C 0.13 4.79 4.48 45.09 0.20 4.99 16 5 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 6 C -0.12 -3.77 7.86 31.25 0.25 -3.52 16 7 C 0.08 3.22 7.46 86.48 0.64 3.87 16 8 N -0.64 -28.74 3.14 -694.08 -2.18 -30.92 16 9 C -0.21 -11.19 8.71 84.03 0.73 -10.46 16 10 H 0.06 3.58 6.27 -2.91 -0.02 3.57 16 11 C -0.03 -1.39 5.50 84.86 0.47 -0.92 16 12 N -0.96 -56.79 13.97 21.65 0.30 -56.49 16 13 Si 0.95 44.60 24.94 68.60 1.71 46.31 16 14 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 16 H -0.24 -10.27 6.45 99.48 0.64 -9.63 16 17 C 0.56 18.78 7.39 86.69 0.64 19.42 16 18 O -0.56 -20.43 15.46 14.12 0.22 -20.21 16 19 C -0.27 -8.00 5.55 -19.83 -0.11 -8.11 16 20 C 0.19 4.74 8.80 85.02 0.75 5.49 16 21 N -0.54 -12.64 10.42 -199.12 -2.07 -14.71 16 22 C 0.34 7.09 12.27 180.86 2.22 9.31 16 23 N -0.56 -14.39 10.45 -312.04 -3.26 -17.65 16 24 C 0.41 11.79 7.83 85.17 0.67 12.46 16 25 O -0.47 -13.45 12.12 -67.54 -0.82 -14.27 16 26 H 0.09 2.11 7.29 -2.39 -0.02 2.10 16 27 H 0.09 3.78 4.50 -2.39 -0.01 3.77 16 28 H 0.07 2.14 4.89 -2.38 -0.01 2.13 16 29 H 0.09 2.85 8.02 -2.39 -0.02 2.83 16 30 H 0.09 2.68 7.69 -2.38 -0.02 2.66 16 31 H 0.09 2.69 8.10 -2.39 -0.02 2.67 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.58 3.73 -2.39 -0.01 1.57 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.21 4.42 4.52 -2.91 -0.01 4.41 16 37 H 0.25 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.43 8.21 9.06 -74.06 -0.67 7.54 16 Total: -1.00 -71.22 307.82 -0.26 -71.48 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.39 Total: 18.70 kcal Atomic # 6 Polarization: 31.44 SS G_CDS: 7.91 Total: 39.35 kcal Atomic # 7 Polarization: -131.68 SS G_CDS: -9.67 Total: -141.35 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.60 Total: -34.49 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.71 Total: 46.31 kcal Total: -71.22 -0.26 -71.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085662213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.225 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds