Wall clock time and date at job start Tue Mar 31 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21274 * 119.99930 * 2 1 4 4 N 1.34772 * 119.99955 * 180.02562 * 2 1 3 5 5 C 1.39429 * 120.00079 * 185.08077 * 4 2 1 6 6 C 1.39007 * 119.63600 * 174.93195 * 5 4 2 7 7 C 1.39557 * 118.93567 * 179.72730 * 6 5 4 8 8 C 1.48159 * 120.88650 * 180.25251 * 7 6 5 9 9 O 1.21511 * 120.00514 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99660 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99474 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46852 * 180.02562 * 11 10 8 13 13 N 1.46495 * 109.47198 * 180.02562 * 12 11 10 14 14 C 1.36940 * 120.00250 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99556 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00010 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00296 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47075 * 59.99807 * 18 16 14 20 20 H 1.48498 * 109.47158 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46898 * 300.00133 * 18 16 14 22 22 C 1.39984 * 118.22601 * 0.27308 * 7 6 5 23 23 C 1.38004 * 119.15388 * 0.02562 * 22 7 6 24 24 N 1.31884 * 120.99072 * 0.02562 * 23 22 7 25 25 H 1.09005 * 109.46861 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47086 * 299.99538 * 1 2 3 27 27 H 1.08995 * 109.47526 * 60.00127 * 1 2 3 28 28 H 0.97002 * 120.00737 * 5.08378 * 4 2 1 29 29 H 1.08002 * 120.53688 * 359.97438 * 6 5 4 30 30 H 0.96993 * 119.99933 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47086 * 299.99821 * 11 10 8 32 32 H 1.08996 * 109.47481 * 60.00406 * 11 10 8 33 33 H 1.09002 * 109.46912 * 299.99661 * 12 11 10 34 34 H 1.09002 * 109.47236 * 59.99467 * 12 11 10 35 35 H 0.97003 * 120.00225 * 359.97438 * 13 12 11 36 36 H 0.96997 * 120.00118 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.42262 * 179.97438 * 22 7 6 38 38 H 1.07995 * 119.50259 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5711 -1.1696 0.1064 6 6 4.2502 -2.3779 0.2116 7 6 5.6421 -2.3636 0.3121 8 6 6.4099 -3.6261 0.4206 9 8 5.8280 -4.6928 0.4225 10 7 7.7538 -3.5913 0.5163 11 6 8.5130 -4.8397 0.6230 12 6 10.0066 -4.5218 0.7183 13 7 10.7658 -5.7701 0.8244 14 6 12.1313 -5.7349 0.9215 15 1 12.6485 -4.7868 0.9202 16 6 12.8506 -6.9178 1.0226 17 7 12.2204 -8.0733 1.0246 18 14 14.7134 -6.8697 1.1557 19 1 15.1034 -6.1078 2.3692 20 1 15.2388 -8.2554 1.2505 21 1 15.2786 -6.2077 -0.0474 22 6 6.2935 -1.1245 0.3081 23 6 5.5430 0.0292 0.2063 24 7 4.2284 -0.0218 0.1140 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6988 -2.0056 -0.0753 29 1 3.7098 -3.3130 0.2115 30 1 8.2184 -2.7399 0.5137 31 1 8.1993 -5.3805 1.5159 32 1 8.3275 -5.4543 -0.2579 33 1 10.3206 -3.9808 -0.1744 34 1 10.1918 -3.9073 1.5994 35 1 10.3013 -6.6217 0.8259 36 1 12.7231 -8.8998 1.0949 37 1 7.3695 -1.0720 0.3845 38 1 6.0397 0.9881 0.2023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135579383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:15 Heat of formation + Delta-G solvation = -7.416230 kcal Electronic energy + Delta-G solvation = -21599.925829 eV Core-core repulsion = 18057.482022 eV Total energy + Delta-G solvation = -3542.443807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24953 -39.91726 -38.81770 -35.81948 -35.33106 -33.99296 -32.87653 -31.42388 -31.12783 -29.34977 -27.94233 -25.17486 -23.69630 -23.43352 -21.78962 -21.46742 -20.24366 -18.80067 -17.60872 -17.24148 -16.97908 -16.29830 -15.98252 -15.54846 -15.48225 -15.32258 -14.64791 -14.49641 -14.35507 -14.12932 -13.78012 -13.71135 -13.24151 -13.13606 -12.90599 -12.66371 -12.33391 -11.55391 -11.15984 -11.15756 -10.88170 -10.82335 -10.67700 -10.27577 -10.14142 -10.13494 -9.79449 -9.43466 -9.08383 -8.91044 -8.69305 -7.03443 -5.82551 -3.13709 0.48660 0.70800 2.22344 2.39846 2.83853 3.02521 3.41026 3.45371 3.46701 3.64458 3.97108 4.35056 4.42008 4.55772 4.57453 4.64756 4.67638 4.79329 4.91833 5.28090 5.30578 5.37661 5.46061 5.48959 5.69152 5.70320 5.79668 5.88881 6.06505 6.30568 6.36267 6.63542 6.64183 6.73043 7.41954 7.56064 7.62522 7.87223 8.08273 8.34831 9.46170 10.00112 10.34755 11.39829 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.053567 B = 0.002190 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.581991 B =12781.304323 C =13276.418919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.500 3.500 3 O -0.479 6.479 4 N -0.662 5.662 5 C 0.353 3.647 6 C -0.150 4.150 7 C -0.054 4.054 8 C 0.555 3.445 9 O -0.530 6.530 10 N -0.711 5.711 11 C 0.110 3.890 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.173 4.173 23 C 0.131 3.869 24 N -0.465 5.465 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.420 0.580 29 H 0.150 0.850 30 H 0.401 0.599 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.143 0.857 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.731 16.054 -2.224 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.287 3.713 3 O -0.348 6.348 4 N -0.310 5.310 5 C 0.122 3.878 6 C -0.174 4.174 7 C -0.066 4.066 8 C 0.340 3.660 9 O -0.407 6.407 10 N -0.363 5.363 11 C -0.013 4.013 12 C 0.016 3.984 13 N -0.374 5.374 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.742 3.258 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.195 4.195 23 C -0.027 4.027 24 N -0.181 5.181 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.257 0.743 29 H 0.167 0.833 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.161 0.839 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.095 16.883 -2.259 28.697 hybrid contribution 1.391 -1.185 0.111 1.831 sum -21.704 15.697 -2.148 26.872 Atomic orbital electron populations 1.21873 0.90597 1.04610 1.05758 1.21118 0.90726 0.83265 0.76189 1.90845 1.69953 1.30375 1.43600 1.43806 1.03828 1.11082 1.72302 1.18357 0.84939 0.89376 0.95083 1.21558 0.93913 0.98180 1.03736 1.20164 0.93594 0.93806 0.99009 1.18081 0.82368 0.88182 0.77401 1.90791 1.69578 1.30736 1.49576 1.45833 1.05996 1.10989 1.73442 1.21670 0.92028 0.84873 1.02771 1.20762 0.87773 0.91414 0.98470 1.42168 1.03861 1.02257 1.89137 1.19143 0.82479 0.92778 1.43305 0.91039 1.24787 0.98219 0.95248 1.02525 1.69654 1.34664 0.96726 1.56786 0.86215 0.85126 0.76570 0.77914 1.21165 1.21595 1.21170 1.22314 1.01829 0.92434 1.02924 1.22660 0.88070 0.98582 0.93388 1.67519 1.09983 1.26900 1.13652 0.90292 0.88280 0.88327 0.74316 0.83270 0.76378 0.90893 0.90889 0.95687 0.95684 0.77974 0.93276 0.83947 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.39 36.01 0.37 -0.24 16 2 C 0.50 4.30 7.90 -10.99 -0.09 4.22 16 3 O -0.48 -6.44 15.36 5.56 0.09 -6.35 16 4 N -0.66 -5.03 5.39 -11.44 -0.06 -5.09 16 5 C 0.35 3.76 7.42 -154.75 -1.15 2.61 16 6 C -0.15 -1.56 9.51 -38.80 -0.37 -1.93 16 7 C -0.05 -0.61 5.91 -104.68 -0.62 -1.23 16 8 C 0.55 7.73 7.80 -12.18 -0.09 7.63 16 9 O -0.53 -9.23 16.44 5.36 0.09 -9.14 16 10 N -0.71 -9.28 5.51 -61.15 -0.34 -9.62 16 11 C 0.11 1.81 5.79 -4.04 -0.02 1.78 16 12 C 0.14 2.72 6.37 -4.04 -0.03 2.69 16 13 N -0.73 -18.16 5.60 -59.91 -0.34 -18.50 16 14 C -0.25 -6.78 9.99 -15.06 -0.15 -6.93 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.17 -1.57 9.61 -39.01 -0.37 -1.95 16 23 C 0.13 1.26 11.17 -17.61 -0.20 1.06 16 24 N -0.47 -5.68 7.86 -12.41 -0.10 -5.78 16 25 H 0.08 0.08 7.92 -51.93 -0.41 -0.33 16 26 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.42 1.54 8.54 -40.82 -0.35 1.19 16 29 H 0.15 1.38 7.74 -52.49 -0.41 0.98 16 30 H 0.40 4.03 6.61 -40.82 -0.27 3.76 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.39 10.19 7.67 -40.82 -0.31 9.88 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.14 0.91 6.53 -52.49 -0.34 0.57 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -37.48 335.50 -7.31 -44.79 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.60 Total: 7.51 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -2.81 Total: 7.30 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: -0.11 Total: -66.22 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.17 Total: -15.49 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.48 -7.31 -44.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135579383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.370 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds