Wall clock time and date at job start Tue Mar 31 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99964 * 2 1 4 4 O 1.20823 * 120.00389 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99707 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.49253 * 59.95659 * 5 3 2 7 7 C 1.53052 * 109.49113 * 299.88888 * 5 3 2 8 8 N 1.46955 * 109.36695 * 181.63659 * 7 5 3 9 9 C 1.46957 * 110.88044 * 59.31471 * 8 7 5 10 10 C 1.53041 * 109.36707 * 300.68180 * 9 8 7 11 11 N 1.46954 * 109.36632 * 58.40487 * 10 9 8 12 12 C 1.38818 * 111.00305 * 176.81173 * 11 10 9 13 13 C 1.39970 * 119.96940 * 266.88336 * 12 11 10 14 14 N 1.32132 * 120.31449 * 179.97438 * 13 12 11 15 15 C 1.31922 * 120.27394 * 0.02562 * 14 13 12 16 16 C 1.40681 * 119.93754 * 359.97438 * 15 14 13 17 17 C 1.41269 * 120.15746 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00035 * 7.14873 * 17 16 15 19 19 C 1.40058 * 120.00207 * 187.14486 * 17 16 15 20 20 N 1.30735 * 119.99983 * 7.19573 * 19 17 16 21 21 Si 1.86802 * 120.00324 * 187.19432 * 19 17 16 22 22 H 1.48496 * 109.46729 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47350 * 120.00041 * 21 19 17 24 24 H 1.48502 * 109.46798 * 240.00100 * 21 19 17 25 25 N 1.32243 * 119.97262 * 86.60983 * 12 11 10 26 26 H 1.09001 * 109.46751 * 300.00196 * 1 2 3 27 27 H 1.09000 * 109.46673 * 59.99806 * 1 2 3 28 28 H 1.08995 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.48535 * 301.60096 * 7 5 3 30 30 H 1.08994 * 109.48835 * 61.66250 * 7 5 3 31 31 H 1.00897 * 111.00367 * 183.18797 * 8 7 5 32 32 H 1.09005 * 109.48574 * 180.71035 * 9 8 7 33 33 H 1.09003 * 109.48748 * 60.65154 * 9 8 7 34 34 H 1.09003 * 109.49242 * 298.43103 * 10 9 8 35 35 H 1.09003 * 109.50902 * 178.37796 * 10 9 8 36 36 H 1.07995 * 119.83829 * 359.97438 * 13 12 11 37 37 H 1.08003 * 120.03170 * 179.97438 * 15 14 13 38 38 H 0.96996 * 120.00629 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9561 0.7803 -0.8903 7 6 4.1144 0.5833 1.2500 8 7 5.5795 0.6959 1.2665 9 6 5.9966 2.1050 1.2665 10 6 5.4486 2.7965 0.0160 11 7 3.9835 2.6840 -0.0005 12 6 3.4446 3.3624 -1.0852 13 6 3.0280 4.6910 -0.9421 14 7 2.5146 5.3433 -1.9701 15 6 2.3897 4.7476 -3.1406 16 6 2.8050 3.4126 -3.2968 17 6 2.6729 2.7700 -4.5479 18 1 2.3616 3.3343 -5.4146 19 6 2.9458 1.4012 -4.6645 20 7 3.1852 0.6890 -3.5946 21 14 2.9677 0.5932 -6.3485 22 1 2.6673 1.6093 -7.3889 23 1 4.3093 0.0085 -6.5997 24 1 1.9430 -0.4806 -6.3956 25 7 3.3304 2.7546 -2.2541 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.7029 1.0607 2.1393 30 1 3.8306 -0.4690 1.2375 31 1 5.9712 0.2028 2.0549 32 1 7.0852 2.1620 1.2662 33 1 5.6066 2.5997 2.1561 34 1 5.8601 2.3192 -0.8734 35 1 5.7324 3.8489 0.0281 36 1 3.1266 5.1852 0.0130 37 1 1.9692 5.2843 -3.9781 38 1 3.3745 -0.2589 -3.6753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165443518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:25 Heat of formation + Delta-G solvation = -12.580340 kcal Electronic energy + Delta-G solvation = -24839.316544 eV Core-core repulsion = 21296.648805 eV Total energy + Delta-G solvation = -3542.667739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39575 -39.03222 -37.88390 -35.81767 -34.28160 -33.91825 -31.47031 -31.21573 -29.50274 -27.49438 -26.25316 -25.26715 -23.88865 -22.33063 -21.30174 -20.96041 -19.25738 -17.69136 -17.38271 -16.73318 -15.93867 -15.74633 -15.41686 -15.08685 -14.97324 -14.73473 -14.43031 -14.34445 -13.65274 -13.17862 -13.07744 -12.84312 -12.41539 -12.21678 -11.71911 -11.58667 -11.46328 -11.40096 -11.28046 -11.00960 -10.82887 -10.74913 -10.36333 -10.26922 -9.81415 -9.74551 -9.50171 -9.06346 -8.53835 -8.26855 -7.58049 -7.30872 -6.55554 -4.65608 2.50729 2.88646 2.95227 3.01937 3.06276 3.12512 3.21613 3.83979 4.21008 4.38874 4.62405 5.05184 5.24103 5.28992 5.43042 5.48041 5.54080 5.58951 5.62857 5.76998 5.85245 5.87329 5.95804 6.07275 6.12580 6.27151 6.46849 6.53581 6.83903 6.91060 6.94100 6.98944 7.18203 7.34415 7.36320 7.51531 7.86446 8.10659 8.44902 8.47964 8.73564 9.28546 9.81240 10.12289 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.007352 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.846435 B = 3807.487250 C = 4190.012676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.362 6.362 3 C 0.481 3.519 4 O -0.485 6.485 5 C 0.106 3.894 6 H 0.121 0.879 7 C 0.071 3.929 8 N -0.686 5.686 9 C 0.059 3.941 10 C 0.066 3.934 11 N -0.466 5.466 12 C 0.282 3.718 13 C -0.075 4.075 14 N -0.425 5.425 15 C -0.073 4.073 16 C 0.228 3.772 17 C -0.421 4.421 18 H 0.089 0.911 19 C 0.073 3.927 20 N -0.719 5.719 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 N -0.487 5.487 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.344 0.656 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 -5.670 7.619 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.278 6.278 3 C 0.322 3.678 4 O -0.369 6.369 5 C -0.004 4.004 6 H 0.138 0.862 7 C -0.059 4.059 8 N -0.317 5.317 9 C -0.070 4.070 10 C -0.061 4.061 11 N -0.191 5.191 12 C 0.044 3.956 13 C -0.236 4.236 14 N -0.137 5.137 15 C -0.242 4.242 16 C 0.100 3.900 17 C -0.453 4.453 18 H 0.107 0.893 19 C -0.153 4.153 20 N -0.340 5.340 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.198 1.198 25 N -0.208 5.208 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.162 0.838 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.435 -5.431 7.473 9.553 hybrid contribution -0.260 -0.499 -0.552 0.788 sum 2.175 -5.930 6.920 9.369 Atomic orbital electron populations 1.23099 0.77282 1.02751 1.02169 1.86445 1.22628 1.33926 1.84842 1.23179 0.91374 0.81199 0.72080 1.90678 1.66396 1.36010 1.43776 1.21049 0.87440 0.90813 1.01088 0.86188 1.21925 0.87933 1.00512 0.95574 1.60414 1.08903 1.13329 1.49085 1.22054 0.99737 0.87902 0.97348 1.22146 0.85476 1.00788 0.97685 1.60020 1.09287 1.10262 1.39520 1.20482 0.94454 0.91751 0.88959 1.22043 1.10940 0.92990 0.97605 1.67680 1.09106 1.37124 0.99748 1.23080 1.10354 0.95500 0.95249 1.19136 0.89005 0.89548 0.92339 1.19608 1.37979 0.93513 0.94239 0.89264 1.26052 0.93262 0.97674 0.98330 1.69966 1.27061 1.07246 1.29729 0.86221 0.78732 0.79569 0.82064 1.18260 1.19655 1.19830 1.69254 1.18415 1.35336 0.97813 0.92595 0.92114 0.88745 0.94314 0.89219 0.83796 0.90037 0.94144 0.92740 0.89848 0.85579 0.85082 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.56 101.05 1.07 1.71 16 2 O -0.36 -6.86 10.49 -39.27 -0.41 -7.27 16 3 C 0.48 10.41 6.75 36.01 0.24 10.65 16 4 O -0.48 -12.05 14.52 -18.75 -0.27 -12.32 16 5 C 0.11 2.12 2.09 -68.80 -0.14 1.97 16 6 H 0.12 2.75 7.71 -51.93 -0.40 2.34 16 7 C 0.07 1.07 5.93 -3.77 -0.02 1.05 16 8 N -0.69 -9.13 6.90 -113.64 -0.78 -9.92 16 9 C 0.06 0.79 6.72 -3.77 -0.03 0.76 16 10 C 0.07 1.16 5.55 -3.77 -0.02 1.14 16 11 N -0.47 -9.71 4.36 -166.63 -0.73 -10.43 16 12 C 0.28 6.96 3.39 -155.02 -0.53 6.44 16 13 C -0.08 -1.89 11.13 -16.77 -0.19 -2.08 16 14 N -0.42 -11.10 10.47 -12.11 -0.13 -11.23 16 15 C -0.07 -1.92 10.97 -16.59 -0.18 -2.10 16 16 C 0.23 6.23 6.51 -84.84 -0.55 5.67 16 17 C -0.42 -10.96 9.15 -37.75 -0.35 -11.30 16 18 H 0.09 2.16 7.86 -52.48 -0.41 1.75 16 19 C 0.07 1.78 5.47 -17.34 -0.09 1.68 16 20 N -0.72 -18.09 11.59 55.55 0.64 -17.45 16 21 Si 0.91 18.05 29.57 -169.99 -5.03 13.03 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 N -0.49 -12.98 6.77 -10.14 -0.07 -13.05 16 26 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 27 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.34 3.47 8.90 -39.29 -0.35 3.12 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 36 H 0.13 2.94 8.06 -52.49 -0.42 2.52 16 37 H 0.13 3.12 8.06 -52.48 -0.42 2.70 16 38 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -31.80 322.34 -7.65 -39.45 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.95 Total: 8.73 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: -0.79 Total: 15.59 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -1.06 Total: -62.08 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.68 Total: -19.59 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.80 -7.65 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165443518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.874 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds