Wall clock time and date at job start Tue Mar 31 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34237 * 116.99857 * 2 1 4 4 O 1.20823 * 119.99902 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99861 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.59127 * 40.69994 * 5 3 2 7 7 C 1.54934 * 110.66601 * 277.69603 * 5 3 2 8 8 C 1.55043 * 102.71608 * 204.08314 * 7 5 3 9 9 H 1.08992 * 110.38085 * 140.90074 * 8 7 5 10 10 N 1.46496 * 110.27735 * 262.99771 * 8 7 5 11 11 C 1.37937 * 120.00007 * 202.20656 * 10 8 7 12 12 N 1.32621 * 120.23609 * 359.97438 * 11 10 8 13 13 C 1.32249 * 120.08635 * 180.02562 * 12 11 10 14 14 C 1.38971 * 120.56697 * 359.97438 * 13 12 11 15 15 N 1.31716 * 120.47779 * 359.97438 * 14 13 12 16 16 C 1.33908 * 119.89320 * 359.75225 * 15 14 13 17 17 C 1.40829 * 120.27511 * 180.25410 * 16 15 14 18 18 H 1.08005 * 119.99737 * 173.56611 * 17 16 15 19 19 C 1.40104 * 120.00235 * 353.56141 * 17 16 15 20 20 N 1.30744 * 120.00041 * 6.21212 * 19 17 16 21 21 Si 1.86798 * 120.00461 * 186.21172 * 19 17 16 22 22 H 1.48498 * 109.47315 * 94.98231 * 21 19 17 23 23 H 1.48496 * 109.47382 * 214.98856 * 21 19 17 24 24 H 1.48501 * 109.46870 * 334.98391 * 21 19 17 25 25 C 1.53998 * 105.18181 * 21.92023 * 8 7 5 26 26 N 1.47903 * 107.05819 * 1.23698 * 25 8 7 27 27 H 1.09009 * 109.47225 * 60.00187 * 1 2 3 28 28 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47504 * 300.00157 * 1 2 3 30 30 H 1.08997 * 110.72621 * 322.33989 * 7 5 3 31 31 H 1.08999 * 110.72690 * 85.62856 * 7 5 3 32 32 H 0.97007 * 120.00197 * 22.20253 * 10 8 7 33 33 H 1.07997 * 119.71137 * 179.97438 * 13 12 11 34 34 H 1.07998 * 119.75588 * 180.02562 * 14 13 12 35 35 H 0.96996 * 120.00285 * 179.97438 * 20 19 17 36 36 H 1.08999 * 109.91881 * 241.88190 * 25 8 7 37 37 H 1.09001 * 109.91506 * 120.59282 * 25 8 7 38 38 H 1.00896 * 110.99978 * 214.15220 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9899 0.5224 -0.6645 7 6 4.1219 1.1100 1.4374 8 6 5.4992 1.8171 1.3540 9 1 5.6933 2.3790 2.2675 10 7 6.5616 0.8343 1.1271 11 6 7.8641 1.1360 1.4661 12 7 8.1601 2.3146 1.9974 13 6 9.4100 2.6009 2.3209 14 6 10.4245 1.6749 2.1099 15 7 10.1556 0.4973 1.5846 16 6 8.8956 0.1856 1.2551 17 6 8.5982 -1.0731 0.6979 18 1 7.5706 -1.3602 0.5302 19 6 9.6352 -1.9529 0.3610 20 7 10.8700 -1.6584 0.6742 21 14 9.2539 -3.5467 -0.5355 22 1 9.4261 -3.3461 -1.9968 23 1 10.1792 -4.6105 -0.0694 24 1 7.8530 -3.9505 -0.2530 25 6 5.3896 2.7730 0.1516 26 7 4.0201 2.6344 -0.3894 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.4757 1.6078 2.1604 31 1 4.2406 0.0555 1.6864 32 1 6.3490 -0.0287 0.7384 33 1 9.6443 3.5627 2.7528 34 1 11.4407 1.9223 2.3793 35 1 11.5879 -2.2676 0.4413 36 1 6.1193 2.4972 -0.6097 37 1 5.5583 3.7996 0.4768 38 1 4.0148 2.7435 -1.3925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169129037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:20 Heat of formation + Delta-G solvation = -42.306501 kcal Electronic energy + Delta-G solvation = -23128.643361 eV Core-core repulsion = 19584.686598 eV Total energy + Delta-G solvation = -3543.956763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66277 -40.86539 -39.45636 -37.42581 -35.79964 -35.73155 -33.34918 -31.62073 -31.12351 -29.11299 -28.19760 -27.73431 -24.33996 -24.08358 -23.35413 -21.49355 -21.40284 -19.46458 -18.90488 -18.46273 -18.02826 -17.76307 -17.38312 -16.90262 -16.57067 -15.80508 -15.57336 -15.23924 -15.01707 -14.65029 -14.52314 -14.19376 -13.92413 -13.71076 -13.43468 -13.19416 -13.12365 -12.95493 -12.77775 -12.65140 -12.40247 -12.06134 -11.89936 -11.77847 -11.64802 -11.45592 -11.23354 -11.19510 -10.41663 -9.69966 -9.20643 -8.59671 -8.24863 -6.31047 0.83134 1.11245 1.28409 1.45819 1.57617 1.59397 1.59549 2.24381 2.62033 2.90631 3.25407 3.44784 3.59689 3.92469 3.99657 4.01453 4.16055 4.20370 4.32685 4.34104 4.35163 4.43216 4.56447 4.71404 4.74730 4.79167 4.92049 5.03148 5.11992 5.16148 5.26353 5.32151 5.47804 5.84048 6.14955 6.16605 6.32448 6.71040 6.76487 6.81382 7.02575 7.63902 8.12909 8.45736 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.004583 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.436557 B = 6107.740308 C = 7624.825102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.518 6.518 5 C 0.076 3.924 6 H 0.105 0.895 7 C -0.106 4.106 8 C 0.161 3.839 9 H 0.079 0.921 10 N -0.706 5.706 11 C 0.262 3.738 12 N -0.507 5.507 13 C -0.082 4.082 14 C 0.007 3.993 15 N -0.488 5.488 16 C 0.161 3.839 17 C -0.445 4.445 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.758 5.758 21 Si 0.985 3.015 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.244 1.244 25 C 0.046 3.954 26 N -0.655 5.655 27 H 0.062 0.938 28 H 0.132 0.868 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.408 0.592 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.279 0.721 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 -1.346 -3.131 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.405 6.405 5 C -0.035 4.035 6 H 0.122 0.878 7 C -0.145 4.145 8 C 0.054 3.946 9 H 0.097 0.903 10 N -0.347 5.347 11 C 0.014 3.986 12 N -0.229 5.229 13 C -0.236 4.236 14 C -0.154 4.154 15 N -0.206 5.206 16 C 0.026 3.974 17 C -0.479 4.479 18 H 0.121 0.879 19 C -0.199 4.199 20 N -0.381 5.381 21 Si 0.805 3.195 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.167 1.167 25 C -0.084 4.084 26 N -0.287 5.287 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.246 0.754 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.196 -0.485 -2.488 15.406 hybrid contribution 0.724 -0.953 -0.981 1.548 sum -14.472 -1.438 -3.469 14.952 Atomic orbital electron populations 1.23554 0.74676 1.05715 1.02526 1.86509 1.25041 1.32574 1.83774 1.23558 0.91613 0.81290 0.71877 1.90648 1.67303 1.37318 1.45237 1.22164 0.87392 0.93656 1.00256 0.87778 1.22788 0.94724 1.03127 0.93844 1.21446 0.86013 0.89472 0.97710 0.90324 1.43835 1.01896 1.18455 1.70503 1.19425 0.87402 0.91743 0.99996 1.67422 1.21685 1.18241 1.15541 1.22730 0.88686 1.01583 1.10589 1.23508 1.00019 0.92144 0.99760 1.69421 1.19256 1.17010 1.14947 1.19520 0.87674 0.94778 0.95414 1.19682 0.95327 0.97934 1.34943 0.87923 1.26980 0.94186 1.03024 0.95663 1.70221 1.01215 1.35083 1.31534 0.85142 0.80147 0.75944 0.78252 1.19288 1.20038 1.16688 1.23034 0.87790 1.00791 0.96835 1.62660 1.22153 1.25284 1.18577 0.91925 0.85013 0.91987 0.89083 0.87524 0.75363 0.83067 0.84100 0.91086 0.94021 0.90189 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.54 10.57 -51.48 -0.54 -8.08 16 3 C 0.47 11.64 7.27 71.24 0.52 12.16 16 4 O -0.52 -15.70 16.33 21.97 0.36 -15.34 16 5 C 0.08 1.76 3.72 44.52 0.17 1.92 16 6 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 7 C -0.11 -2.53 6.14 31.95 0.20 -2.34 16 8 C 0.16 4.89 3.32 46.03 0.15 5.04 16 9 H 0.08 2.70 7.61 -2.39 -0.02 2.69 16 10 N -0.71 -25.50 5.03 -318.00 -1.60 -27.10 16 11 C 0.26 12.06 7.51 134.03 1.01 13.07 16 12 N -0.51 -23.36 9.38 -190.81 -1.79 -25.15 16 13 C -0.08 -3.71 11.22 84.81 0.95 -2.76 16 14 C 0.01 0.35 11.21 84.89 0.95 1.30 16 15 N -0.49 -26.81 8.06 -188.04 -1.52 -28.33 16 16 C 0.16 8.38 6.56 40.35 0.26 8.65 16 17 C -0.44 -21.65 8.86 23.36 0.21 -21.45 16 18 H 0.10 4.34 6.17 -2.91 -0.02 4.33 16 19 C 0.02 1.11 5.49 85.31 0.47 1.58 16 20 N -0.76 -39.45 11.51 21.85 0.25 -39.19 16 21 Si 0.98 35.02 29.57 68.60 2.03 37.05 16 22 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 23 H -0.28 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.24 -7.94 7.11 99.48 0.71 -7.23 16 25 C 0.05 1.34 7.32 86.45 0.63 1.97 16 26 N -0.65 -16.67 6.77 -484.15 -3.28 -19.95 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 30 H 0.09 2.14 8.05 -2.39 -0.02 2.12 16 31 H 0.11 2.26 7.98 -2.39 -0.02 2.24 16 32 H 0.41 13.61 6.54 -92.70 -0.61 13.01 16 33 H 0.15 5.77 8.06 -2.91 -0.02 5.75 16 34 H 0.14 6.04 8.06 -2.91 -0.02 6.02 16 35 H 0.28 13.18 8.29 -92.71 -0.77 12.42 16 36 H 0.04 1.32 7.92 -2.39 -0.02 1.30 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.35 7.86 8.92 -89.70 -0.80 7.06 16 Total: -1.00 -66.31 326.01 0.33 -65.99 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.29 Total: 39.35 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.71 Total: 20.75 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -7.94 Total: -139.72 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.19 Total: -23.42 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -66.31 0.33 -65.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169129037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.681 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds