Wall clock time and date at job start Tue Mar 31 2020 03:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36775 * 120.00037 * 2 1 4 4 H 1.07995 * 119.99903 * 150.37206 * 3 2 1 5 5 C 1.39117 * 120.00218 * 330.36879 * 3 2 1 6 6 N 1.31324 * 119.99631 * 342.01435 * 5 3 2 7 7 Si 1.86795 * 120.00050 * 162.00787 * 5 3 2 8 8 H 1.48507 * 109.46715 * 90.00292 * 7 5 3 9 9 H 1.48502 * 109.47258 * 210.00323 * 7 5 3 10 10 H 1.48498 * 109.47318 * 330.00789 * 7 5 3 11 11 C 1.34778 * 120.00243 * 180.27718 * 2 1 3 12 12 O 1.21568 * 120.00059 * 184.84509 * 11 2 1 13 13 C 1.47962 * 119.99504 * 4.85156 * 11 2 1 14 14 C 1.39356 * 120.05448 * 184.71351 * 13 11 2 15 15 N 1.32162 * 120.05354 * 179.68161 * 14 13 11 16 16 C 1.31955 * 120.17812 * 0.61106 * 15 14 13 17 17 C 1.39657 * 120.10848 * 359.66507 * 16 15 14 18 18 N 1.38976 * 120.02587 * 180.02562 * 17 16 15 19 19 C 1.47013 * 111.00016 * 123.61450 * 18 17 16 20 20 C 1.53092 * 109.25789 * 177.60918 * 19 18 17 21 21 O 1.43015 * 109.26191 * 56.84532 * 20 19 18 22 22 C 1.43017 * 113.73888 * 301.33365 * 21 20 19 23 23 C 1.47009 * 110.99907 * 359.97438 * 18 17 16 24 24 N 1.32349 * 119.94807 * 0.02562 * 17 16 15 25 25 H 1.09004 * 109.46665 * 354.96196 * 1 2 3 26 26 H 1.08995 * 109.47195 * 114.96567 * 1 2 3 27 27 H 1.08995 * 109.46717 * 234.96513 * 1 2 3 28 28 H 0.96996 * 119.99357 * 179.97438 * 6 5 3 29 29 H 1.08005 * 119.97026 * 359.97438 * 14 13 11 30 30 H 1.07994 * 119.94659 * 179.68552 * 16 15 14 31 31 H 1.09006 * 109.50506 * 297.54032 * 19 18 17 32 32 H 1.08994 * 109.50698 * 57.67101 * 19 18 17 33 33 H 1.09000 * 109.50570 * 296.91201 * 20 19 18 34 34 H 1.08998 * 109.54647 * 176.80432 * 20 19 18 35 35 H 1.09006 * 109.50591 * 298.73394 * 22 21 20 36 36 H 1.08998 * 109.54353 * 178.62749 * 22 21 20 37 37 H 1.09001 * 109.50737 * 302.32867 * 23 18 17 38 38 H 1.09002 * 109.50744 * 62.45715 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1845 0.0000 4 1 3.1229 1.2456 0.4624 5 6 1.5898 2.3105 -0.5957 6 7 0.6007 2.1789 -1.4495 7 14 2.2459 4.0096 -0.1808 8 1 3.3399 4.3610 -1.1216 9 1 1.1511 5.0058 -0.3005 10 1 2.7683 4.0128 1.2092 11 6 2.1389 -1.1672 -0.0056 12 8 3.3514 -1.1694 0.0833 13 6 1.4031 -2.4457 -0.1202 14 6 2.0879 -3.6558 -0.0276 15 7 1.4296 -4.7979 -0.1236 16 6 0.1247 -4.7969 -0.3194 17 6 -0.5679 -3.5883 -0.4191 18 7 -1.9424 -3.5893 -0.6248 19 6 -2.6335 -2.8336 0.4300 20 6 -4.1351 -2.8097 0.1328 21 8 -4.6160 -4.1523 0.0249 22 6 -3.9650 -4.9169 -0.9934 23 6 -2.4616 -4.9621 -0.7076 24 7 0.0857 -2.4419 -0.3175 25 1 -0.3633 1.0238 0.0903 26 1 -0.3633 -0.4337 -0.9316 27 1 -0.3632 -0.5899 0.8414 28 1 0.2107 2.9641 -1.8645 29 1 3.1567 -3.6605 0.1275 30 1 -0.4087 -5.7323 -0.4024 31 1 -2.4608 -3.3127 1.3938 32 1 -2.2514 -1.8131 0.4565 33 1 -4.3122 -2.2832 -0.8050 34 1 -4.6588 -2.2994 0.9412 35 1 -4.1371 -4.4517 -1.9640 36 1 -4.3650 -5.9309 -0.9998 37 1 -1.9542 -5.4953 -1.5115 38 1 -2.2861 -5.4753 0.2379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190765190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:44 Heat of formation + Delta-G solvation = 15.311308 kcal Electronic energy + Delta-G solvation = -23852.302885 eV Core-core repulsion = 20310.844618 eV Total energy + Delta-G solvation = -3541.458267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20737 -39.51662 -38.12604 -36.12889 -34.82876 -33.85080 -31.74025 -31.52443 -30.42974 -27.22472 -26.47516 -25.89102 -24.51644 -23.33176 -22.99478 -21.01921 -19.74090 -17.67029 -17.50061 -16.85029 -16.54206 -16.18221 -15.79641 -15.54394 -15.17754 -15.00126 -14.77476 -14.54863 -14.22822 -14.12050 -13.41243 -13.06561 -12.56156 -12.35621 -11.93168 -11.86148 -11.68505 -11.57919 -11.47172 -11.19279 -11.10419 -10.93170 -10.66355 -10.47821 -10.37134 -10.03726 -9.70396 -9.19678 -8.98121 -8.42588 -8.06669 -7.70688 -6.56981 -4.04128 0.85193 1.41876 3.05489 3.13410 3.16290 3.21552 3.57858 3.63480 3.95528 4.29323 4.41884 4.46230 4.57837 4.68032 4.79216 4.81140 4.88397 4.97968 5.03518 5.10833 5.27553 5.41576 5.43328 5.51490 5.56155 5.71707 5.74175 5.85133 6.39444 6.48323 6.62138 6.84064 6.86945 6.89472 7.27076 7.36687 7.62416 7.95719 8.10277 8.33526 8.98010 9.19009 9.83027 10.45801 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.004945 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.453858 B = 5661.195052 C = 6966.394879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.398 5.398 3 C -0.304 4.304 4 H 0.104 0.896 5 C 0.036 3.964 6 N -0.849 5.849 7 Si 0.929 3.071 8 H -0.273 1.273 9 H -0.280 1.280 10 H -0.265 1.265 11 C 0.472 3.528 12 O -0.585 6.585 13 C 0.099 3.901 14 C 0.055 3.945 15 N -0.422 5.422 16 C -0.009 4.009 17 C 0.260 3.740 18 N -0.469 5.469 19 C 0.025 3.975 20 C 0.063 3.937 21 O -0.386 6.386 22 C 0.065 3.935 23 C 0.013 3.987 24 N -0.431 5.431 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.274 0.726 29 H 0.177 0.823 30 H 0.163 0.837 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -10.505 1.811 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.112 5.112 3 C -0.433 4.433 4 H 0.122 0.878 5 C -0.171 4.171 6 N -0.485 5.485 7 Si 0.754 3.246 8 H -0.199 1.199 9 H -0.205 1.205 10 H -0.190 1.190 11 C 0.260 3.740 12 O -0.471 6.471 13 C -0.043 4.043 14 C -0.107 4.107 15 N -0.135 5.135 16 C -0.174 4.174 17 C 0.024 3.976 18 N -0.188 5.188 19 C -0.101 4.101 20 C -0.014 4.014 21 O -0.304 6.304 22 C -0.012 4.012 23 C -0.115 4.115 24 N -0.153 5.153 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.194 0.806 30 H 0.180 0.820 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.142 -10.149 1.417 15.138 hybrid contribution 0.465 0.525 0.277 0.754 sum -10.677 -9.624 1.694 14.474 Atomic orbital electron populations 1.21747 0.80080 1.01438 0.99645 1.43577 1.06415 1.04432 1.56787 1.19792 1.04170 0.84856 1.34510 0.87839 1.25538 0.96617 1.00849 0.94096 1.69994 1.24184 1.31419 1.22898 0.85898 0.78614 0.80469 0.79622 1.19891 1.20502 1.18979 1.17459 0.86577 0.82285 0.87652 1.90625 1.12630 1.85840 1.58039 1.22675 0.88977 0.97231 0.95441 1.23536 1.02030 0.87086 0.98016 1.68326 1.07788 1.29540 1.07843 1.23763 0.92044 0.97995 1.03573 1.20767 0.90865 0.90813 0.95177 1.58570 1.00462 1.14804 1.44930 1.22924 0.94847 1.00889 0.91412 1.22755 0.92151 0.83701 1.02784 1.87989 1.61649 1.24252 1.56501 1.22679 0.89795 0.96982 0.91750 1.23051 0.97358 0.88318 1.02726 1.68792 1.08498 1.26346 1.11659 0.90503 0.91830 0.95232 0.91571 0.80583 0.81990 0.93080 0.87327 0.91612 0.87755 0.91843 0.87848 0.88553 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.62 7.76 59.85 0.46 3.09 16 2 N -0.40 -10.40 2.97 -123.24 -0.37 -10.76 16 3 C -0.30 -8.31 9.12 -15.02 -0.14 -8.45 16 4 H 0.10 2.91 7.54 -52.49 -0.40 2.51 16 5 C 0.04 0.93 4.85 -17.44 -0.08 0.84 16 6 N -0.85 -22.08 11.30 55.50 0.63 -21.46 16 7 Si 0.93 19.68 29.59 -169.99 -5.03 14.65 16 8 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 9 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 11 C 0.47 12.11 7.60 -12.28 -0.09 12.01 16 12 O -0.59 -16.38 16.10 5.31 0.09 -16.29 16 13 C 0.10 2.14 6.64 -82.87 -0.55 1.59 16 14 C 0.06 1.07 10.76 -16.99 -0.18 0.89 16 15 N -0.42 -7.32 10.48 -12.52 -0.13 -7.45 16 16 C -0.01 -0.13 9.99 -16.97 -0.17 -0.30 16 17 C 0.26 4.24 6.44 -154.89 -1.00 3.25 16 18 N -0.47 -6.33 4.80 -172.75 -0.83 -7.16 16 19 C 0.03 0.31 5.51 -3.71 -0.02 0.29 16 20 C 0.06 0.65 7.01 37.21 0.26 0.91 16 21 O -0.39 -4.18 10.83 -35.23 -0.38 -4.56 16 22 C 0.07 0.57 7.01 37.21 0.26 0.83 16 23 C 0.01 0.13 4.32 -3.71 -0.02 0.11 16 24 N -0.43 -8.46 5.62 -8.82 -0.05 -8.51 16 25 H 0.08 1.83 6.04 -51.93 -0.31 1.52 16 26 H 0.06 1.50 6.93 -51.93 -0.36 1.14 16 27 H 0.03 0.61 6.79 -51.93 -0.35 0.26 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.18 3.28 7.64 -52.48 -0.40 2.87 16 30 H 0.16 1.85 5.80 -52.49 -0.30 1.54 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 1.52 7.28 -51.93 -0.38 1.14 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.82 7.21 -51.93 -0.37 0.45 16 38 H 0.06 0.56 7.52 -51.93 -0.39 0.17 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -31.37 311.80 -7.16 -38.54 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.52 Total: 3.25 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -1.27 Total: 15.06 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.75 Total: -55.34 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.30 Total: -20.85 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.37 -7.16 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190765190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.847 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds