Wall clock time and date at job start Tue Mar 31 2020 03:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36775 * 120.00037 * 2 1 4 4 H 1.07995 * 119.99903 * 150.37206 * 3 2 1 5 5 C 1.39117 * 120.00218 * 330.36879 * 3 2 1 6 6 N 1.31324 * 119.99631 * 342.01435 * 5 3 2 7 7 Si 1.86795 * 120.00050 * 162.00787 * 5 3 2 8 8 H 1.48507 * 109.46715 * 90.00292 * 7 5 3 9 9 H 1.48502 * 109.47258 * 210.00323 * 7 5 3 10 10 H 1.48498 * 109.47318 * 330.00789 * 7 5 3 11 11 C 1.34778 * 120.00243 * 180.27718 * 2 1 3 12 12 O 1.21568 * 120.00059 * 184.84509 * 11 2 1 13 13 C 1.47962 * 119.99504 * 4.85156 * 11 2 1 14 14 C 1.39356 * 120.05448 * 184.71351 * 13 11 2 15 15 N 1.32162 * 120.05354 * 179.68161 * 14 13 11 16 16 C 1.31955 * 120.17812 * 0.61106 * 15 14 13 17 17 C 1.39657 * 120.10848 * 359.66507 * 16 15 14 18 18 N 1.38976 * 120.02587 * 180.02562 * 17 16 15 19 19 C 1.47013 * 111.00016 * 123.61450 * 18 17 16 20 20 C 1.53092 * 109.25789 * 177.60918 * 19 18 17 21 21 O 1.43015 * 109.26191 * 56.84532 * 20 19 18 22 22 C 1.43017 * 113.73888 * 301.33365 * 21 20 19 23 23 C 1.47009 * 110.99907 * 359.97438 * 18 17 16 24 24 N 1.32349 * 119.94807 * 0.02562 * 17 16 15 25 25 H 1.09004 * 109.46665 * 354.96196 * 1 2 3 26 26 H 1.08995 * 109.47195 * 114.96567 * 1 2 3 27 27 H 1.08995 * 109.46717 * 234.96513 * 1 2 3 28 28 H 0.96996 * 119.99357 * 179.97438 * 6 5 3 29 29 H 1.08005 * 119.97026 * 359.97438 * 14 13 11 30 30 H 1.07994 * 119.94659 * 179.68552 * 16 15 14 31 31 H 1.09006 * 109.50506 * 297.54032 * 19 18 17 32 32 H 1.08994 * 109.50698 * 57.67101 * 19 18 17 33 33 H 1.09000 * 109.50570 * 296.91201 * 20 19 18 34 34 H 1.08998 * 109.54647 * 176.80432 * 20 19 18 35 35 H 1.09006 * 109.50591 * 298.73394 * 22 21 20 36 36 H 1.08998 * 109.54353 * 178.62749 * 22 21 20 37 37 H 1.09001 * 109.50737 * 302.32867 * 23 18 17 38 38 H 1.09002 * 109.50744 * 62.45715 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1845 0.0000 4 1 3.1229 1.2456 0.4624 5 6 1.5898 2.3105 -0.5957 6 7 0.6007 2.1789 -1.4495 7 14 2.2459 4.0096 -0.1808 8 1 3.3399 4.3610 -1.1216 9 1 1.1511 5.0058 -0.3005 10 1 2.7683 4.0128 1.2092 11 6 2.1389 -1.1672 -0.0056 12 8 3.3514 -1.1694 0.0833 13 6 1.4031 -2.4457 -0.1202 14 6 2.0879 -3.6558 -0.0276 15 7 1.4296 -4.7979 -0.1236 16 6 0.1247 -4.7969 -0.3194 17 6 -0.5679 -3.5883 -0.4191 18 7 -1.9424 -3.5893 -0.6248 19 6 -2.6335 -2.8336 0.4300 20 6 -4.1351 -2.8097 0.1328 21 8 -4.6160 -4.1523 0.0249 22 6 -3.9650 -4.9169 -0.9934 23 6 -2.4616 -4.9621 -0.7076 24 7 0.0857 -2.4419 -0.3175 25 1 -0.3633 1.0238 0.0903 26 1 -0.3633 -0.4337 -0.9316 27 1 -0.3632 -0.5899 0.8414 28 1 0.2107 2.9641 -1.8645 29 1 3.1567 -3.6605 0.1275 30 1 -0.4087 -5.7323 -0.4024 31 1 -2.4608 -3.3127 1.3938 32 1 -2.2514 -1.8131 0.4565 33 1 -4.3122 -2.2832 -0.8050 34 1 -4.6588 -2.2994 0.9412 35 1 -4.1371 -4.4517 -1.9640 36 1 -4.3650 -5.9309 -0.9998 37 1 -1.9542 -5.4953 -1.5115 38 1 -2.2861 -5.4753 0.2379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190765190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:43 Heat of formation + Delta-G solvation = -7.795613 kcal Electronic energy + Delta-G solvation = -23853.304876 eV Core-core repulsion = 20310.844618 eV Total energy + Delta-G solvation = -3542.460258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.56993 -40.67936 -39.85236 -37.23745 -36.75236 -35.34462 -33.65428 -32.40358 -31.74224 -28.41108 -28.22780 -27.47179 -26.01316 -24.64480 -24.22891 -22.16125 -21.23215 -19.31135 -18.80258 -18.59346 -17.81815 -17.44906 -17.06640 -16.89475 -16.63142 -16.16119 -15.99923 -15.87580 -15.62932 -15.49222 -14.90531 -14.66599 -14.01009 -13.75597 -13.60083 -13.36462 -13.25408 -12.85991 -12.66741 -12.63939 -12.40128 -12.35319 -12.13084 -12.07953 -11.77570 -11.21879 -11.09847 -10.90969 -10.61551 -10.05484 -9.68737 -9.30919 -8.49402 -6.11227 -0.61408 -0.00926 1.37031 1.41467 1.55434 1.81371 2.08670 2.21680 2.63360 2.76238 2.90251 3.02479 3.19512 3.28089 3.39277 3.80267 3.81234 3.97871 4.06796 4.07878 4.17349 4.25614 4.32165 4.52168 4.67472 4.76695 4.80886 4.83786 4.94671 4.95488 5.08314 5.31760 5.36495 5.46378 5.65526 6.00573 6.12123 6.22252 6.34022 6.67309 6.99822 7.24563 7.85711 8.54072 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.004945 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.453858 B = 5661.195052 C = 6966.394879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.418 5.418 3 C -0.352 4.352 4 H 0.080 0.920 5 C 0.006 3.994 6 N -0.875 5.875 7 Si 0.997 3.003 8 H -0.273 1.273 9 H -0.263 1.263 10 H -0.264 1.264 11 C 0.465 3.535 12 O -0.621 6.621 13 C 0.074 3.926 14 C 0.054 3.946 15 N -0.421 5.421 16 C 0.024 3.976 17 C 0.261 3.739 18 N -0.477 5.477 19 C 0.026 3.974 20 C 0.070 3.930 21 O -0.395 6.395 22 C 0.064 3.936 23 C 0.006 3.994 24 N -0.447 5.447 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.281 0.719 29 H 0.175 0.825 30 H 0.213 0.787 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 -12.490 1.721 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.132 5.132 3 C -0.480 4.480 4 H 0.098 0.902 5 C -0.199 4.199 6 N -0.511 5.511 7 Si 0.818 3.182 8 H -0.199 1.199 9 H -0.187 1.187 10 H -0.189 1.189 11 C 0.254 3.746 12 O -0.510 6.510 13 C -0.067 4.067 14 C -0.106 4.106 15 N -0.134 5.134 16 C -0.144 4.144 17 C 0.023 3.977 18 N -0.196 5.196 19 C -0.100 4.100 20 C -0.007 4.007 21 O -0.314 6.314 22 C -0.013 4.013 23 C -0.120 4.120 24 N -0.170 5.170 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.192 0.808 30 H 0.229 0.771 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.134 0.866 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.391 -12.127 1.325 18.114 hybrid contribution 0.969 0.811 0.247 1.288 sum -12.421 -11.316 1.572 16.876 Atomic orbital electron populations 1.21531 0.78618 1.00621 0.99671 1.43760 1.07353 1.04389 1.57670 1.19770 1.04497 0.86548 1.37230 0.90180 1.26336 0.96584 1.03859 0.93114 1.70047 1.25044 1.32722 1.23288 0.84914 0.78295 0.75825 0.79163 1.19854 1.18690 1.18855 1.18093 0.86595 0.83692 0.86196 1.90561 1.14370 1.86955 1.59075 1.22034 0.89987 0.95823 0.98843 1.23442 1.02114 0.86975 0.98070 1.68456 1.08800 1.28058 1.08135 1.24600 0.91201 0.99442 0.99120 1.21157 0.92319 0.90174 0.94048 1.58613 0.98792 1.17377 1.44776 1.22923 0.96111 0.99646 0.91284 1.22743 0.90604 0.84021 1.03373 1.87989 1.61944 1.24256 1.57215 1.22890 0.88907 0.98356 0.91151 1.23329 0.98261 0.86190 1.04202 1.68588 1.07763 1.28619 1.11986 0.91832 0.92857 0.93599 0.90910 0.80795 0.77104 0.92761 0.89505 0.91894 0.86012 0.91925 0.84728 0.86580 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.60 7.76 127.77 0.99 7.59 16 2 N -0.42 -22.91 2.97 -662.10 -1.97 -24.88 16 3 C -0.35 -20.28 9.12 84.13 0.77 -19.51 16 4 H 0.08 4.83 7.54 -2.91 -0.02 4.81 16 5 C 0.01 0.32 4.85 84.98 0.41 0.73 16 6 N -0.88 -46.61 11.30 21.69 0.25 -46.36 16 7 Si 1.00 41.18 29.59 68.60 2.03 43.21 16 8 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 9 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 C 0.47 25.08 7.60 86.82 0.66 25.74 16 12 O -0.62 -36.79 16.10 -3.93 -0.06 -36.86 16 13 C 0.07 3.24 6.64 41.78 0.28 3.52 16 14 C 0.05 2.06 10.76 84.91 0.91 2.97 16 15 N -0.42 -13.61 10.48 -193.51 -2.03 -15.64 16 16 C 0.02 0.63 9.99 85.02 0.85 1.48 16 17 C 0.26 7.93 6.44 133.21 0.86 8.79 16 18 N -0.48 -11.54 4.80 -700.45 -3.36 -14.90 16 19 C 0.03 0.60 5.51 86.31 0.48 1.08 16 20 C 0.07 1.27 7.01 72.01 0.50 1.78 16 21 O -0.40 -7.21 10.83 -148.98 -1.61 -8.82 16 22 C 0.06 0.84 7.01 72.01 0.50 1.35 16 23 C 0.01 0.10 4.32 86.31 0.37 0.47 16 24 N -0.45 -17.47 5.62 -181.83 -1.02 -18.49 16 25 H 0.06 3.14 6.04 -2.38 -0.01 3.13 16 26 H 0.05 2.60 6.93 -2.39 -0.02 2.58 16 27 H 0.05 1.97 6.79 -2.39 -0.02 1.95 16 28 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 29 H 0.17 6.65 7.64 -2.91 -0.02 6.63 16 30 H 0.21 3.50 5.80 -2.91 -0.02 3.48 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.09 2.39 7.28 -2.39 -0.02 2.38 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 1.32 7.21 -2.39 -0.02 1.30 16 38 H 0.07 0.97 7.52 -2.39 -0.02 0.95 16 Total: -1.00 -71.47 311.80 0.90 -70.57 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.09 Total: 16.19 kcal Atomic # 6 Polarization: 28.40 SS G_CDS: 7.59 Total: 35.98 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -8.14 Total: -120.28 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.68 Total: -45.68 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -71.47 0.90 -70.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190765190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.778 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds