Wall clock time and date at job start Tue Mar 31 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 117.00233 * 2 1 4 4 C 1.39694 * 125.67203 * 180.02562 * 3 2 1 5 5 C 1.37986 * 107.63532 * 179.97438 * 4 3 2 6 6 C 1.47171 * 126.43235 * 179.97438 * 5 4 3 7 7 O 1.21631 * 119.99820 * 170.17950 * 6 5 4 8 8 N 1.34777 * 120.00102 * 350.17702 * 6 5 4 9 9 C 1.46498 * 120.00072 * 180.71462 * 8 6 5 10 10 C 1.50697 * 109.47451 * 89.99357 * 9 8 6 11 11 H 1.07990 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99873 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00150 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47023 * 89.99937 * 14 12 10 16 16 H 1.48493 * 109.47419 * 210.00469 * 14 12 10 17 17 H 1.48500 * 109.46758 * 330.00538 * 14 12 10 18 18 C 1.46496 * 119.99850 * 0.70897 * 8 6 5 19 19 C 1.52999 * 109.47345 * 83.10166 * 18 8 6 20 20 C 1.47201 * 109.47124 * 184.94521 * 19 18 8 21 21 N 4.63654 * 153.83322 * 196.93832 * 2 1 3 22 22 N 1.36667 * 107.12971 * 359.97438 * 5 4 3 23 23 C 1.46502 * 126.09656 * 180.02562 * 22 5 4 24 24 N 1.31224 * 125.67054 * 359.97260 * 3 2 1 25 25 H 1.09005 * 109.47105 * 60.00123 * 1 2 3 26 26 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47530 * 300.00355 * 1 2 3 28 28 H 1.07990 * 126.17970 * 359.93418 * 4 3 2 29 29 H 1.09001 * 109.47016 * 210.00397 * 9 8 6 30 30 H 1.09009 * 109.46787 * 329.99298 * 9 8 6 31 31 H 0.97002 * 119.99766 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47268 * 203.10362 * 18 8 6 33 33 H 1.09002 * 109.47174 * 323.09725 * 18 8 6 34 34 H 1.08998 * 109.47114 * 304.95135 * 19 18 8 35 35 H 1.09005 * 109.46430 * 64.94323 * 19 18 8 36 36 H 1.09002 * 109.47104 * 275.13195 * 23 22 5 37 37 H 1.09003 * 109.47115 * 35.12844 * 23 22 5 38 38 H 1.08995 * 109.47402 * 155.13452 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4274 1.4223 -0.0005 5 6 3.6425 2.7853 -0.0009 6 6 4.9483 3.4641 -0.0010 7 8 5.0091 4.6655 -0.1810 8 7 6.0766 2.7545 0.1985 9 6 7.3752 3.4326 0.2140 10 6 7.6989 3.8659 1.6206 11 1 7.0069 3.6568 2.4228 12 6 8.8792 4.5284 1.8834 13 7 9.7223 4.7826 0.9065 14 14 9.2808 5.0649 3.6270 15 1 10.0239 3.9816 4.3195 16 1 10.1168 6.2915 3.5874 17 1 8.0210 5.3480 4.3604 18 6 6.0046 1.3053 0.3999 19 6 5.9295 0.6047 -0.9582 20 6 5.7378 -0.8405 -0.7548 21 7 5.5903 -1.9559 -0.5957 22 7 2.4151 3.3865 -0.0012 23 6 2.1607 4.8292 -0.0022 24 7 1.4440 2.3775 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 4.1890 0.6567 0.0000 29 1 8.1461 2.7493 -0.1423 30 1 7.3363 4.3070 -0.4357 31 1 10.5524 5.2491 1.0914 32 1 6.8929 0.9680 0.9341 33 1 5.1162 1.0633 0.9833 34 1 5.0914 1.0058 -1.5281 35 1 6.8562 0.7749 -1.5064 36 1 2.1882 5.2037 1.0211 37 1 2.9253 5.3326 -0.5940 38 1 1.1794 5.0248 -0.4344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194743405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:54 Heat of formation + Delta-G solvation = 69.996293 kcal Electronic energy + Delta-G solvation = -23528.781401 eV Core-core repulsion = 19989.694453 eV Total energy + Delta-G solvation = -3539.086948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.50513 -39.19475 -38.03465 -37.08132 -35.52234 -33.15491 -32.48813 -31.25675 -30.28635 -28.04833 -27.27988 -25.84976 -24.37376 -23.69887 -21.75133 -20.93025 -19.28509 -17.74061 -17.10991 -16.70696 -16.53067 -16.23643 -16.06880 -15.24816 -15.17291 -15.05906 -14.58006 -14.21896 -14.03263 -13.56312 -13.34838 -12.98991 -12.68097 -12.57258 -12.44293 -12.27046 -12.00855 -11.92487 -11.77872 -11.37384 -11.18799 -11.05862 -10.95441 -10.75856 -10.45030 -10.24277 -9.81374 -9.43826 -9.01672 -8.53577 -8.39103 -8.02003 -6.15628 -4.20799 1.27257 2.17678 2.60515 2.75746 2.83821 3.11852 3.25482 3.32773 3.36051 3.53768 3.61047 4.12371 4.36382 4.51811 4.74033 5.02888 5.06339 5.09243 5.12574 5.20224 5.28127 5.36388 5.37189 5.42778 5.47447 5.65468 5.74008 5.82281 5.91477 6.08175 6.76580 6.80165 7.18206 7.22089 7.29067 7.59204 7.60044 7.79942 8.01404 8.07270 8.56765 8.84244 9.45060 10.92468 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.005024 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.292794 B = 5571.617429 C = 6650.425675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.289 6.289 3 C 0.254 3.746 4 C -0.269 4.269 5 C 0.078 3.922 6 C 0.573 3.427 7 O -0.525 6.525 8 N -0.570 5.570 9 C 0.245 3.755 10 C -0.533 4.533 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.091 3.909 19 C -0.061 4.061 20 C 0.212 3.788 21 N -0.434 5.434 22 N -0.326 5.326 23 C 0.101 3.899 24 N -0.333 5.333 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.182 0.818 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 -5.523 -3.666 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.194 6.194 3 C 0.052 3.948 4 C -0.299 4.299 5 C -0.054 4.054 6 C 0.357 3.643 7 O -0.401 6.401 8 N -0.300 5.300 9 C 0.127 3.873 10 C -0.571 4.571 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.035 4.035 19 C -0.103 4.103 20 C -0.106 4.106 21 N -0.111 5.111 22 N -0.112 5.112 23 C -0.040 4.040 24 N -0.174 5.174 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.198 0.802 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.526 -6.030 -3.565 16.127 hybrid contribution 0.760 0.421 0.937 1.278 sum -13.766 -5.609 -2.628 15.096 Atomic orbital electron populations 1.22944 0.77822 1.03345 1.02054 1.86319 1.21976 1.21391 1.89695 1.20313 0.91506 0.85061 0.97885 1.22253 0.94246 0.95095 1.18332 1.21428 0.88597 0.91823 1.03595 1.16941 0.82047 0.86375 0.78945 1.90791 1.86279 1.13419 1.49633 1.47986 1.08132 1.06238 1.67676 1.19522 0.75971 0.93497 0.98314 1.21388 1.04269 1.37903 0.93563 0.92175 1.24898 0.95997 0.95428 0.97464 1.69917 1.10511 1.41098 1.31515 0.86496 0.78395 0.78221 0.84335 1.20549 1.21074 1.19878 1.22053 1.05872 0.81268 0.94266 1.20099 1.06587 0.82013 1.01551 1.28937 0.93168 0.94909 0.93577 1.81224 1.08993 1.12706 1.08168 1.48238 1.01495 1.06254 1.55241 1.22152 1.04231 0.73219 1.04371 1.77309 1.13708 0.94945 1.31447 0.92556 0.88367 0.92551 0.80161 0.93971 0.93084 0.92553 0.87909 0.88412 0.86659 0.86142 0.90387 0.87241 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.68 101.05 1.08 1.41 16 2 O -0.29 -3.95 10.58 -19.73 -0.21 -4.16 16 3 C 0.25 3.82 7.85 -17.27 -0.14 3.68 16 4 C -0.27 -3.94 7.33 -39.13 -0.29 -4.22 16 5 C 0.08 1.25 6.72 -82.18 -0.55 0.70 16 6 C 0.57 10.63 7.59 -12.63 -0.10 10.53 16 7 O -0.52 -11.28 14.41 5.25 0.08 -11.20 16 8 N -0.57 -10.31 2.47 -176.43 -0.44 -10.74 16 9 C 0.25 5.53 5.13 -5.20 -0.03 5.51 16 10 C -0.53 -13.67 9.39 -34.44 -0.32 -14.00 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -24.55 13.29 55.43 0.74 -23.82 16 14 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.09 1.26 4.92 -4.04 -0.02 1.24 16 19 C -0.06 -0.68 5.00 -29.52 -0.15 -0.83 16 20 C 0.21 2.68 14.41 -20.75 -0.30 2.38 16 21 N -0.43 -6.52 18.54 42.17 0.78 -5.74 16 22 N -0.33 -5.00 4.06 -63.97 -0.26 -5.26 16 23 C 0.10 1.25 10.93 59.85 0.65 1.90 16 24 N -0.33 -5.08 11.92 30.46 0.36 -4.72 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.18 2.37 2.35 -52.49 -0.12 2.24 16 29 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.05 1.30 7.41 -51.92 -0.38 0.92 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.10 1.42 8.02 -51.93 -0.42 1.00 16 33 H 0.10 1.31 4.85 -51.93 -0.25 1.05 16 34 H 0.12 1.23 6.33 -51.93 -0.33 0.90 16 35 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.11 1.45 6.49 -51.93 -0.34 1.11 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -31.81 330.05 -3.59 -35.40 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.34 Total: -0.25 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -0.25 Total: 9.92 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 1.19 Total: -50.28 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.13 Total: -15.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.81 -3.59 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194743405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.394 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds