Wall clock time and date at job start Tue Mar 31 2020 02:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 117.00233 * 2 1 4 4 C 1.39694 * 125.67203 * 180.02562 * 3 2 1 5 5 C 1.37986 * 107.63532 * 179.97438 * 4 3 2 6 6 C 1.47171 * 126.43235 * 179.97438 * 5 4 3 7 7 O 1.21631 * 119.99820 * 170.17950 * 6 5 4 8 8 N 1.34777 * 120.00102 * 350.17702 * 6 5 4 9 9 C 1.46498 * 120.00072 * 180.71462 * 8 6 5 10 10 C 1.50697 * 109.47451 * 89.99357 * 9 8 6 11 11 H 1.07990 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99873 * 179.97438 * 10 9 8 13 13 N 1.31522 * 120.00150 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47023 * 89.99937 * 14 12 10 16 16 H 1.48493 * 109.47419 * 210.00469 * 14 12 10 17 17 H 1.48500 * 109.46758 * 330.00538 * 14 12 10 18 18 C 1.46496 * 119.99850 * 0.70897 * 8 6 5 19 19 C 1.52999 * 109.47345 * 83.10166 * 18 8 6 20 20 C 1.47201 * 109.47124 * 184.94521 * 19 18 8 21 21 N 4.63654 * 153.83322 * 196.93832 * 2 1 3 22 22 N 1.36667 * 107.12971 * 359.97438 * 5 4 3 23 23 C 1.46502 * 126.09656 * 180.02562 * 22 5 4 24 24 N 1.31224 * 125.67054 * 359.97260 * 3 2 1 25 25 H 1.09005 * 109.47105 * 60.00123 * 1 2 3 26 26 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47530 * 300.00355 * 1 2 3 28 28 H 1.07990 * 126.17970 * 359.93418 * 4 3 2 29 29 H 1.09001 * 109.47016 * 210.00397 * 9 8 6 30 30 H 1.09009 * 109.46787 * 329.99298 * 9 8 6 31 31 H 0.97002 * 119.99766 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47268 * 203.10362 * 18 8 6 33 33 H 1.09002 * 109.47174 * 323.09725 * 18 8 6 34 34 H 1.08998 * 109.47114 * 304.95135 * 19 18 8 35 35 H 1.09005 * 109.46430 * 64.94323 * 19 18 8 36 36 H 1.09002 * 109.47104 * 275.13195 * 23 22 5 37 37 H 1.09003 * 109.47115 * 35.12844 * 23 22 5 38 38 H 1.08995 * 109.47402 * 155.13452 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4274 1.4223 -0.0005 5 6 3.6425 2.7853 -0.0009 6 6 4.9483 3.4641 -0.0010 7 8 5.0091 4.6655 -0.1810 8 7 6.0766 2.7545 0.1985 9 6 7.3752 3.4326 0.2140 10 6 7.6989 3.8659 1.6206 11 1 7.0069 3.6568 2.4228 12 6 8.8792 4.5284 1.8834 13 7 9.7223 4.7826 0.9065 14 14 9.2808 5.0649 3.6270 15 1 10.0239 3.9816 4.3195 16 1 10.1168 6.2915 3.5874 17 1 8.0210 5.3480 4.3604 18 6 6.0046 1.3053 0.3999 19 6 5.9295 0.6047 -0.9582 20 6 5.7378 -0.8405 -0.7548 21 7 5.5903 -1.9559 -0.5957 22 7 2.4151 3.3865 -0.0012 23 6 2.1607 4.8292 -0.0022 24 7 1.4440 2.3775 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 4.1890 0.6567 0.0000 29 1 8.1461 2.7493 -0.1423 30 1 7.3363 4.3070 -0.4357 31 1 10.5524 5.2491 1.0914 32 1 6.8929 0.9680 0.9341 33 1 5.1162 1.0633 0.9833 34 1 5.0914 1.0058 -1.5281 35 1 6.8562 0.7749 -1.5064 36 1 2.1882 5.2037 1.0211 37 1 2.9253 5.3326 -0.5940 38 1 1.1794 5.0248 -0.4344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194743405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:53 Heat of formation + Delta-G solvation = 47.432973 kcal Electronic energy + Delta-G solvation = -23529.759820 eV Core-core repulsion = 19989.694453 eV Total energy + Delta-G solvation = -3540.065367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.71134 -40.54530 -39.11077 -38.29314 -36.86729 -34.99232 -33.62968 -32.68341 -31.51090 -29.24674 -28.73759 -26.84926 -25.65755 -25.36044 -23.10489 -22.12693 -20.56122 -18.92923 -18.49394 -18.23833 -17.88774 -17.34744 -17.26144 -16.86198 -16.25192 -16.20305 -16.01107 -15.49564 -15.41894 -14.77335 -14.45308 -14.31876 -14.21427 -13.66024 -13.63135 -13.55070 -13.26141 -13.11381 -12.93346 -12.83743 -12.70526 -12.50790 -12.17893 -12.15260 -12.03650 -11.69963 -11.60776 -10.95541 -10.55018 -10.22285 -9.63547 -9.48110 -8.16136 -6.27568 0.00637 1.04076 1.42471 1.43924 1.46239 1.54890 1.68189 1.81328 1.94449 2.19265 2.38101 2.47875 3.00250 3.16892 3.38237 3.54124 3.95809 4.03213 4.14729 4.32917 4.35519 4.38264 4.39155 4.47855 4.58236 4.65898 4.73115 4.77920 4.86240 5.02138 5.09773 5.33485 5.54878 5.63479 5.83010 6.12008 6.14771 6.41462 6.53160 6.59464 6.79545 7.12687 7.42869 8.90820 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.005024 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.292794 B = 5571.617429 C = 6650.425675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.299 6.299 3 C 0.247 3.753 4 C -0.256 4.256 5 C 0.064 3.936 6 C 0.573 3.427 7 O -0.562 6.562 8 N -0.570 5.570 9 C 0.260 3.740 10 C -0.542 4.542 11 H 0.054 0.946 12 C 0.018 3.982 13 N -0.922 5.922 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.275 1.275 18 C 0.088 3.912 19 C -0.050 4.050 20 C 0.238 3.762 21 N -0.471 5.471 22 N -0.330 5.330 23 C 0.097 3.903 24 N -0.332 5.332 25 H 0.059 0.941 26 H 0.127 0.873 27 H 0.057 0.943 28 H 0.194 0.806 29 H 0.048 0.952 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 -6.572 -3.274 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.045 3.955 4 C -0.286 4.286 5 C -0.068 4.068 6 C 0.359 3.641 7 O -0.441 6.441 8 N -0.299 5.299 9 C 0.140 3.860 10 C -0.581 4.581 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.561 5.561 14 Si 0.781 3.219 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.036 4.036 19 C -0.091 4.091 20 C -0.080 4.080 21 N -0.149 5.149 22 N -0.117 5.117 23 C -0.043 4.043 24 N -0.174 5.174 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.075 0.925 28 H 0.211 0.789 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.590 -7.122 -3.169 17.430 hybrid contribution 0.987 0.731 0.799 1.465 sum -14.603 -6.391 -2.370 16.115 Atomic orbital electron populations 1.23232 0.75818 1.05426 1.02259 1.86319 1.23997 1.20553 1.89505 1.20464 0.91730 0.85499 0.97767 1.22348 0.94687 0.94603 1.16958 1.21026 0.87833 0.92319 1.05607 1.17198 0.82885 0.85977 0.78033 1.90769 1.86944 1.15122 1.51289 1.47805 1.06673 1.07836 1.67556 1.19050 0.78085 0.92773 0.96111 1.21694 1.04031 1.37642 0.94748 0.92808 1.25624 0.96109 0.95638 1.00819 1.70008 1.10943 1.41989 1.33198 0.85597 0.77985 0.77998 0.80315 1.19401 1.21015 1.20040 1.22226 1.06483 0.78850 0.96017 1.20026 1.08156 0.80744 1.00148 1.28936 0.91913 0.94709 0.92418 1.81262 1.10434 1.13870 1.09295 1.48517 1.01185 1.07101 1.54899 1.22301 1.05324 0.71911 1.04747 1.77293 1.13677 0.95140 1.31289 0.92209 0.85447 0.92452 0.78934 0.93455 0.96471 0.92482 0.87610 0.87594 0.85585 0.84178 0.89893 0.88408 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.68 113.37 1.21 1.68 16 2 O -0.30 -7.49 10.58 -93.53 -0.99 -8.48 16 3 C 0.25 6.94 7.85 85.14 0.67 7.61 16 4 C -0.26 -7.03 7.33 22.56 0.17 -6.87 16 5 C 0.06 2.01 6.72 40.68 0.27 2.28 16 6 C 0.57 21.26 7.59 86.59 0.66 21.92 16 7 O -0.56 -24.71 14.41 -4.13 -0.06 -24.77 16 8 N -0.57 -20.38 2.47 -830.33 -2.05 -22.43 16 9 C 0.26 11.85 5.13 85.63 0.44 12.29 16 10 C -0.54 -27.97 9.39 25.60 0.24 -27.73 16 11 H 0.05 2.78 7.81 -2.92 -0.02 2.76 16 12 C 0.02 0.95 5.46 84.65 0.46 1.41 16 13 N -0.92 -51.09 13.29 21.45 0.28 -50.80 16 14 Si 0.96 42.13 29.54 68.60 2.03 44.15 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 C 0.09 2.31 4.92 86.38 0.42 2.74 16 19 C -0.05 -1.00 5.00 28.79 0.14 -0.86 16 20 C 0.24 5.50 14.41 89.44 1.29 6.79 16 21 N -0.47 -13.38 18.54 20.01 0.37 -13.01 16 22 N -0.33 -9.76 4.06 -356.31 -1.45 -11.21 16 23 C 0.10 2.33 10.93 127.77 1.40 3.73 16 24 N -0.33 -9.56 11.92 -170.76 -2.04 -11.60 16 25 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.19 4.65 2.35 -2.92 -0.01 4.64 16 29 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 30 H 0.02 0.90 7.41 -2.38 -0.02 0.88 16 31 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.11 2.75 8.02 -2.39 -0.02 2.73 16 33 H 0.11 2.64 4.85 -2.39 -0.01 2.63 16 34 H 0.13 2.39 6.33 -2.39 -0.02 2.37 16 35 H 0.14 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 2.62 6.49 -2.39 -0.02 2.60 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -67.92 330.05 4.57 -63.35 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.11 Total: 9.82 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 7.37 Total: 24.98 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.88 Total: -109.05 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.05 Total: -33.25 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -67.92 4.57 -63.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194743405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.782 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds