Wall clock time and date at job start Tue Mar 31 2020 02:54:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 N 1.28438 * 125.19326 * 2 1
4 4 C 1.30871 * 110.92642 * 179.75435 * 3 2 1
5 5 C 1.39672 * 107.86110 * 0.41744 * 4 3 2
6 6 C 1.50692 * 127.32083 * 179.86354 * 5 4 3
7 7 C 1.53004 * 117.49821 * 351.05753 * 6 5 4
8 8 C 1.53002 * 117.50065 * 59.68219 * 6 5 4
9 9 C 1.36601 * 125.18505 * 180.02562 * 2 1 3
10 10 C 1.47164 * 126.88746 * 359.97438 * 9 2 1
11 11 O 1.21630 * 119.99457 * 92.93144 * 10 9 2
12 12 N 1.34768 * 120.00327 * 272.93404 * 10 9 2
13 13 C 1.46507 * 119.99985 * 185.29072 * 12 10 9
14 14 C 1.50699 * 109.47085 * 179.97438 * 13 12 10
15 15 O 1.21298 * 119.99953 * 0.02562 * 14 13 12
16 16 N 1.34773 * 120.00249 * 179.97438 * 14 13 12
17 17 C 1.37093 * 120.00353 * 180.02562 * 16 14 13
18 18 H 1.08000 * 120.00200 * 0.02562 * 17 16 14
19 19 C 1.38956 * 120.00126 * 179.97438 * 17 16 14
20 20 N 1.31407 * 119.99793 * 0.02562 * 19 17 16
21 21 Si 1.86804 * 119.99867 * 179.97438 * 19 17 16
22 22 H 1.48497 * 109.46686 * 90.00433 * 21 19 17
23 23 H 1.48498 * 109.46926 * 210.00265 * 21 19 17
24 24 H 1.48498 * 109.47061 * 330.00008 * 21 19 17
25 25 H 1.08994 * 109.47181 * 274.72904 * 1 2 3
26 26 H 1.09002 * 109.46894 * 34.72506 * 1 2 3
27 27 H 1.08996 * 109.47065 * 154.71927 * 1 2 3
28 28 H 1.07997 * 126.06829 * 180.27925 * 4 3 2
29 29 H 1.09000 * 115.56518 * 205.37483 * 6 5 4
30 30 H 1.09000 * 117.50021 * 214.97451 * 7 6 5
31 31 H 1.09004 * 117.49639 * 0.02562 * 7 6 5
32 32 H 1.09003 * 117.49466 * 0.02562 * 8 6 5
33 33 H 1.08998 * 117.50441 * 145.02136 * 8 6 5
34 34 H 0.96995 * 120.00309 * 5.28743 * 12 10 9
35 35 H 1.09004 * 109.47179 * 299.99637 * 13 12 10
36 36 H 1.08992 * 109.47159 * 60.00000 * 13 12 10
37 37 H 0.97006 * 119.99712 * 0.02562 * 16 14 13
38 38 H 0.97001 * 120.00088 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 7 2.2053 1.0496 0.0000
4 6 3.4736 0.7271 0.0052
5 6 3.5612 -0.6669 -0.0007
6 6 4.8145 -1.5035 -0.0007
7 6 6.1471 -0.7798 -0.2046
8 6 5.7791 -1.3312 1.1744
9 6 2.2522 -1.1164 -0.0005
10 6 1.7992 -2.5166 -0.0006
11 8 1.6629 -3.1115 -1.0527
12 7 1.5353 -3.1396 1.1649
13 6 1.1968 -4.5650 1.1734
14 6 0.9497 -5.0143 2.5905
15 8 1.0463 -4.2216 3.5035
16 7 0.6204 -6.2964 2.8433
17 6 0.3950 -6.7050 4.1324
18 1 0.4811 -5.9993 4.9454
19 6 0.0550 -8.0269 4.3929
20 7 -0.0502 -8.8854 3.4036
21 14 -0.2514 -8.5836 6.1495
22 1 -1.6884 -8.4089 6.4806
23 1 0.1176 -10.0155 6.2863
24 1 0.5733 -7.7692 7.0778
25 1 -0.3633 0.0847 1.0241
26 1 -0.3633 0.8447 -0.5854
27 1 -0.3633 -0.9292 -0.4389
28 1 4.3050 1.4164 0.0107
29 1 4.7137 -2.5017 -0.4269
30 1 6.9229 -1.3019 -0.7647
31 1 6.1171 0.3016 -0.3383
32 1 5.5068 -0.6129 1.9477
33 1 6.3128 -2.2159 1.5215
34 1 1.5696 -2.6444 1.9982
35 1 0.2985 -4.7287 0.5781
36 1 2.0224 -5.1370 0.7501
37 1 0.5428 -6.9303 2.1130
38 1 -0.2872 -9.8083 3.5855
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001328702137.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:54:15
Heat of formation + Delta-G solvation = 31.194232 kcal
Electronic energy + Delta-G solvation = -22686.918220 eV
Core-core repulsion = 19146.148688 eV
Total energy + Delta-G solvation = -3540.769532 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-42.62373 -39.47458 -38.13092 -37.33433 -34.57648 -33.79112 -33.25209 -31.48088
-31.00634 -27.89528 -27.15716 -24.79704 -23.71981 -22.62038 -22.29508 -20.25148
-19.90306 -19.55383 -18.32438 -17.87784 -16.52153 -16.08798 -15.79781 -15.59781
-15.32627 -15.12694 -14.66238 -14.34868 -14.25129 -13.92249 -13.58864 -13.23561
-13.06095 -12.88683 -12.29954 -12.16895 -11.97436 -11.68560 -11.61351 -11.16937
-11.09233 -10.79680 -10.50025 -10.41396 -10.37903 -10.16568 -9.69428 -9.24988
-9.01446 -8.72050 -8.59837 -8.16417 -6.57072 -3.99290 1.56803 2.05886
2.50297 2.69140 3.07699 3.18266 3.21518 3.27939 3.66371 3.88387
4.06156 4.24914 4.64212 4.72164 4.77009 4.79737 4.92285 4.96181
5.08934 5.11102 5.16213 5.20155 5.40373 5.54913 5.73679 5.77988
5.82165 5.85349 5.96681 6.03621 6.14740 6.38482 6.44440 6.62568
7.40874 7.55152 7.85075 7.95385 8.14566 8.38468 8.98777 9.32287
9.79855 10.59634
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.021315 B = 0.003366 C = 0.003176
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1313.330963 B = 8317.702160 C = 8814.774724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.273 5.273
3 N -0.284 5.284
4 C 0.006 3.994
5 C -0.123 4.123
6 C -0.084 4.084
7 C -0.170 4.170
8 C -0.168 4.168
9 C -0.018 4.018
10 C 0.590 3.410
11 O -0.529 6.529
12 N -0.690 5.690
13 C 0.107 3.893
14 C 0.426 3.574
15 O -0.596 6.596
16 N -0.546 5.546
17 C -0.306 4.306
18 H 0.106 0.894
19 C 0.027 3.973
20 N -0.893 5.893
21 Si 0.933 3.067
22 H -0.276 1.276
23 H -0.282 1.282
24 H -0.268 1.268
25 H 0.089 0.911
26 H 0.098 0.902
27 H 0.094 0.906
28 H 0.183 0.817
29 H 0.112 0.888
30 H 0.097 0.903
31 H 0.096 0.904
32 H 0.097 0.903
33 H 0.098 0.902
34 H 0.414 0.586
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.396 0.604
38 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.792 14.130 -7.285 16.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.060 5.060
3 N -0.114 5.114
4 C -0.171 4.171
5 C -0.133 4.133
6 C -0.103 4.103
7 C -0.207 4.207
8 C -0.205 4.205
9 C -0.147 4.147
10 C 0.372 3.628
11 O -0.405 6.405
12 N -0.343 5.343
13 C -0.020 4.020
14 C 0.212 3.788
15 O -0.483 6.483
16 N -0.181 5.181
17 C -0.436 4.436
18 H 0.124 0.876
19 C -0.176 4.176
20 N -0.533 5.533
21 Si 0.760 3.240
22 H -0.202 1.202
23 H -0.207 1.207
24 H -0.193 1.193
25 H 0.108 0.892
26 H 0.117 0.883
27 H 0.113 0.887
28 H 0.200 0.800
29 H 0.130 0.870
30 H 0.116 0.884
31 H 0.114 0.886
32 H 0.115 0.885
33 H 0.117 0.883
34 H 0.253 0.747
35 H 0.106 0.894
36 H 0.106 0.894
37 H 0.230 0.770
38 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 4.780 14.883 -7.409 17.299
hybrid contribution 0.236 -1.242 0.746 1.468
sum 5.016 13.641 -6.662 15.988
Atomic orbital electron populations
1.22221 0.72914 1.05459 1.04871 1.45506 1.07448 1.01755 1.51338
1.73124 1.03973 1.13528 1.20801 1.23310 0.93384 0.93994 1.06413
1.19746 0.91414 0.93515 1.08640 1.20193 0.86884 0.99033 1.04214
1.22967 0.97343 1.00435 0.99965 1.23035 1.02313 1.03537 0.91608
1.21221 0.91654 0.88875 1.12906 1.16935 0.77640 0.84126 0.84137
1.90843 1.51714 1.66623 1.31290 1.45699 1.68131 1.10985 1.09512
1.21056 1.02256 0.81156 0.97545 1.19657 0.85839 0.84059 0.89266
1.90514 1.58726 1.53205 1.45836 1.41783 1.58744 1.07808 1.09765
1.19734 1.44509 0.94769 0.84545 0.87632 1.25331 0.96736 0.95599
0.99943 1.69609 1.47023 1.04895 1.31812 0.85810 0.78850 0.77843
0.81533 1.20236 1.20744 1.19266 0.89233 0.88320 0.88728 0.79980
0.87022 0.88449 0.88570 0.88487 0.88328 0.74703 0.89413 0.89439
0.77006 0.91516
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.82 11.21 59.85 0.67 1.49 16
2 N -0.27 -3.60 3.75 -63.88 -0.24 -3.84 16
3 N -0.28 -3.80 11.90 30.59 0.36 -3.44 16
4 C 0.01 0.08 11.41 -17.43 -0.20 -0.12 16
5 C -0.12 -1.65 5.94 -104.03 -0.62 -2.26 16
6 C -0.08 -1.00 6.12 -91.77 -0.56 -1.56 16
7 C -0.17 -1.54 10.05 -26.73 -0.27 -1.81 16
8 C -0.17 -1.71 10.23 -26.73 -0.27 -1.98 16
9 C -0.02 -0.26 6.71 -82.06 -0.55 -0.81 16
10 C 0.59 9.52 6.83 -12.64 -0.09 9.44 16
11 O -0.53 -9.90 17.12 5.25 0.09 -9.81 16
12 N -0.69 -11.27 5.52 -62.65 -0.35 -11.62 16
13 C 0.11 1.88 6.16 -5.19 -0.03 1.84 16
14 C 0.43 9.41 7.85 -10.99 -0.09 9.33 16
15 O -0.60 -14.86 15.24 5.54 0.08 -14.78 16
16 N -0.55 -13.11 5.29 -10.96 -0.06 -13.17 16
17 C -0.31 -8.12 9.68 -14.93 -0.14 -8.27 16
18 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16
19 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16
20 N -0.89 -23.33 13.05 55.50 0.72 -22.60 16
21 Si 0.93 20.13 29.55 -169.99 -5.02 15.10 16
22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16
23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16
25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16
28 H 0.18 1.63 7.34 -52.49 -0.39 1.24 16
29 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16
30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16
31 H 0.10 0.75 7.13 -51.93 -0.37 0.38 16
32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16
33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.41 6.92 7.42 -40.82 -0.30 6.61 16
35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16
36 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16
37 H 0.40 9.11 7.90 -40.82 -0.32 8.79 16
38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16
LS Contribution 338.50 15.07 5.10 5.10
Total: -1.00 -31.74 338.50 -6.22 -37.96
By element:
Atomic # 1 Polarization: 19.89 SS G_CDS: -4.67 Total: 15.22 kcal
Atomic # 6 Polarization: 8.12 SS G_CDS: -2.25 Total: 5.87 kcal
Atomic # 7 Polarization: -55.11 SS G_CDS: 0.44 Total: -54.67 kcal
Atomic # 8 Polarization: -24.75 SS G_CDS: 0.17 Total: -24.58 kcal
Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -31.74 -6.22 -37.96 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328702137.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.152 kcal
(2) G-P(sol) polarization free energy of solvation -31.738 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds