Wall clock time and date at job start Tue Mar 31 2020 02:54:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 N 1.28438 * 125.19326 * 2 1
4 4 C 1.30871 * 110.92642 * 179.75435 * 3 2 1
5 5 C 1.39672 * 107.86110 * 0.41744 * 4 3 2
6 6 C 1.50692 * 127.32083 * 179.86354 * 5 4 3
7 7 C 1.53004 * 117.49821 * 351.05753 * 6 5 4
8 8 C 1.53002 * 117.50065 * 59.68219 * 6 5 4
9 9 C 1.36601 * 125.18505 * 180.02562 * 2 1 3
10 10 C 1.47164 * 126.88746 * 359.97438 * 9 2 1
11 11 O 1.21630 * 119.99457 * 92.93144 * 10 9 2
12 12 N 1.34768 * 120.00327 * 272.93404 * 10 9 2
13 13 C 1.46507 * 119.99985 * 185.29072 * 12 10 9
14 14 C 1.50699 * 109.47085 * 179.97438 * 13 12 10
15 15 O 1.21298 * 119.99953 * 0.02562 * 14 13 12
16 16 N 1.34773 * 120.00249 * 179.97438 * 14 13 12
17 17 C 1.37093 * 120.00353 * 180.02562 * 16 14 13
18 18 H 1.08000 * 120.00200 * 0.02562 * 17 16 14
19 19 C 1.38956 * 120.00126 * 179.97438 * 17 16 14
20 20 N 1.31407 * 119.99793 * 0.02562 * 19 17 16
21 21 Si 1.86804 * 119.99867 * 179.97438 * 19 17 16
22 22 H 1.48497 * 109.46686 * 90.00433 * 21 19 17
23 23 H 1.48498 * 109.46926 * 210.00265 * 21 19 17
24 24 H 1.48498 * 109.47061 * 330.00008 * 21 19 17
25 25 H 1.08994 * 109.47181 * 274.72904 * 1 2 3
26 26 H 1.09002 * 109.46894 * 34.72506 * 1 2 3
27 27 H 1.08996 * 109.47065 * 154.71927 * 1 2 3
28 28 H 1.07997 * 126.06829 * 180.27925 * 4 3 2
29 29 H 1.09000 * 115.56518 * 205.37483 * 6 5 4
30 30 H 1.09000 * 117.50021 * 214.97451 * 7 6 5
31 31 H 1.09004 * 117.49639 * 0.02562 * 7 6 5
32 32 H 1.09003 * 117.49466 * 0.02562 * 8 6 5
33 33 H 1.08998 * 117.50441 * 145.02136 * 8 6 5
34 34 H 0.96995 * 120.00309 * 5.28743 * 12 10 9
35 35 H 1.09004 * 109.47179 * 299.99637 * 13 12 10
36 36 H 1.08992 * 109.47159 * 60.00000 * 13 12 10
37 37 H 0.97006 * 119.99712 * 0.02562 * 16 14 13
38 38 H 0.97001 * 120.00088 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 7 2.2053 1.0496 0.0000
4 6 3.4736 0.7271 0.0052
5 6 3.5612 -0.6669 -0.0007
6 6 4.8145 -1.5035 -0.0007
7 6 6.1471 -0.7798 -0.2046
8 6 5.7791 -1.3312 1.1744
9 6 2.2522 -1.1164 -0.0005
10 6 1.7992 -2.5166 -0.0006
11 8 1.6629 -3.1115 -1.0527
12 7 1.5353 -3.1396 1.1649
13 6 1.1968 -4.5650 1.1734
14 6 0.9497 -5.0143 2.5905
15 8 1.0463 -4.2216 3.5035
16 7 0.6204 -6.2964 2.8433
17 6 0.3950 -6.7050 4.1324
18 1 0.4811 -5.9993 4.9454
19 6 0.0550 -8.0269 4.3929
20 7 -0.0502 -8.8854 3.4036
21 14 -0.2514 -8.5836 6.1495
22 1 -1.6884 -8.4089 6.4806
23 1 0.1176 -10.0155 6.2863
24 1 0.5733 -7.7692 7.0778
25 1 -0.3633 0.0847 1.0241
26 1 -0.3633 0.8447 -0.5854
27 1 -0.3633 -0.9292 -0.4389
28 1 4.3050 1.4164 0.0107
29 1 4.7137 -2.5017 -0.4269
30 1 6.9229 -1.3019 -0.7647
31 1 6.1171 0.3016 -0.3383
32 1 5.5068 -0.6129 1.9477
33 1 6.3128 -2.2159 1.5215
34 1 1.5696 -2.6444 1.9982
35 1 0.2985 -4.7287 0.5781
36 1 2.0224 -5.1370 0.7501
37 1 0.5428 -6.9303 2.1130
38 1 -0.2872 -9.8083 3.5855
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001328702137.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:54:14
Heat of formation + Delta-G solvation = 8.657017 kcal
Electronic energy + Delta-G solvation = -22687.895507 eV
Core-core repulsion = 19146.148688 eV
Total energy + Delta-G solvation = -3541.746819 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 292.132 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-43.61078 -40.94339 -39.84508 -38.16413 -36.30630 -35.43360 -34.13944 -33.40268
-32.11629 -29.38105 -28.05820 -26.59125 -24.73877 -23.70586 -23.14278 -21.46885
-21.23946 -20.84802 -20.09226 -19.23518 -17.76352 -17.41173 -17.09713 -16.78520
-16.68672 -16.40626 -16.29697 -15.78872 -15.40427 -15.23149 -15.08160 -14.38428
-14.00960 -13.85783 -13.68683 -13.62814 -13.55685 -12.98559 -12.91541 -12.46646
-12.32326 -12.13529 -12.01193 -11.73530 -11.58358 -11.46839 -11.24919 -10.60283
-10.40872 -10.23486 -10.10747 -9.55528 -8.52220 -6.02337 0.51656 0.93942
1.35721 1.42837 1.52299 1.56356 1.58892 1.88406 2.01397 2.29858
3.05621 3.06310 3.15111 3.37449 3.46647 3.89277 3.96506 4.10727
4.18056 4.22267 4.26473 4.27872 4.35940 4.36753 4.48093 4.50942
4.82918 4.88838 5.02135 5.06631 5.25735 5.31502 5.37583 5.44597
5.69461 5.89817 6.20769 6.46412 6.81315 6.97709 7.02534 7.41987
7.92461 8.64485
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.021315 B = 0.003366 C = 0.003176
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1313.330963 B = 8317.702160 C = 8814.774724
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.275 5.275
3 N -0.292 5.292
4 C 0.007 3.993
5 C -0.123 4.123
6 C -0.112 4.112
7 C -0.146 4.146
8 C -0.167 4.167
9 C -0.048 4.048
10 C 0.602 3.398
11 O -0.557 6.557
12 N -0.687 5.687
13 C 0.120 3.880
14 C 0.433 3.567
15 O -0.624 6.624
16 N -0.556 5.556
17 C -0.338 4.338
18 H 0.086 0.914
19 C -0.008 4.008
20 N -0.915 5.915
21 Si 0.995 3.005
22 H -0.270 1.270
23 H -0.272 1.272
24 H -0.270 1.270
25 H 0.101 0.899
26 H 0.120 0.880
27 H 0.091 0.909
28 H 0.215 0.785
29 H 0.094 0.906
30 H 0.110 0.890
31 H 0.114 0.886
32 H 0.099 0.901
33 H 0.100 0.900
34 H 0.414 0.586
35 H 0.104 0.896
36 H 0.101 0.899
37 H 0.400 0.600
38 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.459 15.051 -7.317 17.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.063 5.063
3 N -0.123 5.123
4 C -0.170 4.170
5 C -0.134 4.134
6 C -0.131 4.131
7 C -0.183 4.183
8 C -0.204 4.204
9 C -0.176 4.176
10 C 0.385 3.615
11 O -0.434 6.434
12 N -0.340 5.340
13 C -0.008 4.008
14 C 0.220 3.780
15 O -0.513 6.513
16 N -0.192 5.192
17 C -0.467 4.467
18 H 0.104 0.896
19 C -0.209 4.209
20 N -0.554 5.554
21 Si 0.818 3.182
22 H -0.196 1.196
23 H -0.197 1.197
24 H -0.195 1.195
25 H 0.119 0.881
26 H 0.138 0.862
27 H 0.110 0.890
28 H 0.231 0.769
29 H 0.112 0.888
30 H 0.128 0.872
31 H 0.132 0.868
32 H 0.117 0.883
33 H 0.119 0.881
34 H 0.252 0.748
35 H 0.122 0.878
36 H 0.119 0.881
37 H 0.234 0.766
38 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 5.441 15.809 -7.458 18.307
hybrid contribution 0.057 -1.465 0.721 1.634
sum 5.499 14.344 -6.737 16.774
Atomic orbital electron populations
1.22488 0.71387 1.06287 1.06083 1.45788 1.08414 1.01152 1.50941
1.73116 1.04628 1.13604 1.20975 1.23814 0.93829 0.93896 1.05460
1.20052 0.91379 0.94337 1.07638 1.20204 0.87787 0.98756 1.06383
1.23107 0.95230 1.01365 0.98587 1.23079 1.01500 1.03863 0.91964
1.21119 0.92716 0.88409 1.15394 1.17023 0.76504 0.84646 0.83294
1.90820 1.52967 1.67551 1.32097 1.45660 1.68240 1.10408 1.09706
1.20918 1.03523 0.81997 0.94321 1.20324 0.83806 0.83142 0.90771
1.90494 1.59404 1.53848 1.47511 1.41813 1.59544 1.08576 1.09217
1.19725 1.46534 0.95222 0.85197 0.89604 1.26096 0.95921 0.95171
1.03708 1.69669 1.47108 1.05262 1.33395 0.84893 0.78788 0.77601
0.76882 1.19565 1.19659 1.19488 0.88056 0.86197 0.89025 0.76882
0.88807 0.87154 0.86754 0.88300 0.88134 0.74775 0.87840 0.88102
0.76601 0.91026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.40 11.21 127.77 1.43 2.83 16
2 N -0.27 -7.00 3.75 -356.01 -1.33 -8.34 16
3 N -0.29 -7.37 11.90 -57.14 -0.68 -8.05 16
4 C 0.01 0.15 11.41 85.18 0.97 1.12 16
5 C -0.12 -3.18 5.94 -19.48 -0.12 -3.30 16
6 C -0.11 -2.57 6.12 -11.54 -0.07 -2.64 16
7 C -0.15 -2.29 10.05 30.60 0.31 -1.98 16
8 C -0.17 -3.15 10.23 30.60 0.31 -2.84 16
9 C -0.05 -1.39 6.71 40.79 0.27 -1.11 16
10 C 0.60 19.40 6.83 86.59 0.59 20.00 16
11 O -0.56 -20.84 17.12 -4.13 -0.07 -20.91 16
12 N -0.69 -22.40 5.52 -470.37 -2.60 -25.00 16
13 C 0.12 4.15 6.16 85.63 0.53 4.67 16
14 C 0.43 19.26 7.85 87.66 0.69 19.95 16
15 O -0.62 -31.55 15.24 -3.08 -0.05 -31.60 16
16 N -0.56 -27.03 5.29 -306.98 -1.62 -28.65 16
17 C -0.34 -18.17 9.68 84.04 0.81 -17.36 16
18 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16
19 C -0.01 -0.41 5.50 84.93 0.47 0.06 16
20 N -0.91 -47.52 13.05 21.66 0.28 -47.24 16
21 Si 1.00 40.94 29.55 68.60 2.03 42.97 16
22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
23 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16
24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
25 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16
26 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16
27 H 0.09 1.70 7.66 -2.39 -0.02 1.69 16
28 H 0.21 3.12 7.34 -2.91 -0.02 3.10 16
29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16
30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16
31 H 0.11 1.38 7.13 -2.38 -0.02 1.36 16
32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16
33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16
34 H 0.41 13.88 7.42 -92.71 -0.69 13.19 16
35 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16
36 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16
37 H 0.40 18.57 7.90 -92.70 -0.73 17.84 16
38 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16
Total: -1.00 -67.61 338.50 1.86 -65.76
By element:
Atomic # 1 Polarization: 41.97 SS G_CDS: -0.30 Total: 41.66 kcal
Atomic # 6 Polarization: 13.19 SS G_CDS: 6.20 Total: 19.39 kcal
Atomic # 7 Polarization: -111.32 SS G_CDS: -5.95 Total: -117.27 kcal
Atomic # 8 Polarization: -52.39 SS G_CDS: -0.12 Total: -52.51 kcal
Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal
Total: -67.61 1.86 -65.76 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328702137.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.415 kcal
(2) G-P(sol) polarization free energy of solvation -67.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.657 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds