Wall clock time and date at job start Tue Mar 31 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47542 * 2 1 4 4 C 1.50698 * 109.47149 * 239.99845 * 2 1 3 5 5 H 1.08005 * 119.99919 * 275.01916 * 4 2 1 6 6 C 1.37873 * 120.00515 * 95.01661 * 4 2 1 7 7 N 1.31508 * 120.00618 * 184.90204 * 6 4 2 8 8 Si 1.86807 * 119.99480 * 4.89780 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.80368 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.79994 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.80306 * 8 6 4 12 12 N 1.46505 * 109.47342 * 119.99955 * 2 1 3 13 13 C 1.46502 * 119.99697 * 59.99627 * 12 2 1 14 14 S 1.65594 * 120.00226 * 240.00001 * 12 2 1 15 15 O 1.42099 * 106.40343 * 203.53479 * 14 12 2 16 16 O 1.42108 * 106.40149 * 336.45673 * 14 12 2 17 17 N 1.65600 * 107.21992 * 89.99330 * 14 12 2 18 18 C 1.46503 * 119.99628 * 65.00121 * 17 14 12 19 19 C 1.53004 * 109.47149 * 165.00052 * 18 17 14 20 20 H 1.09000 * 112.84734 * 43.80546 * 19 18 17 21 21 C 1.53781 * 113.61746 * 175.00173 * 19 18 17 22 22 C 1.53772 * 87.08283 * 139.98037 * 21 19 18 23 23 H 1.08999 * 113.61555 * 89.11994 * 22 21 19 24 24 O 1.42905 * 113.61658 * 219.93279 * 22 21 19 25 25 C 1.53781 * 87.08309 * 334.56767 * 22 21 19 26 26 H 1.09001 * 109.47123 * 54.83931 * 1 2 3 27 27 H 1.09009 * 109.47309 * 294.84349 * 1 2 3 28 28 H 1.08997 * 109.47897 * 174.84302 * 1 2 3 29 29 H 0.96999 * 120.00117 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47248 * 90.00326 * 13 12 2 31 31 H 1.09008 * 109.46740 * 210.00376 * 13 12 2 32 32 H 1.09004 * 109.47396 * 329.99999 * 13 12 2 33 33 H 0.96998 * 120.00538 * 245.00410 * 17 14 12 34 34 H 1.08998 * 109.47448 * 284.99665 * 18 17 14 35 35 H 1.09000 * 109.47453 * 45.00125 * 18 17 14 36 36 H 1.09003 * 113.61189 * 254.53089 * 21 19 18 37 37 H 1.09005 * 113.61323 * 25.42924 * 21 19 18 38 38 H 0.96694 * 114.00274 * 180.02562 * 24 22 21 39 39 H 1.09004 * 113.61479 * 270.88322 * 25 22 21 40 40 H 1.08997 * 113.61483 * 139.98233 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.1351 -1.7856 -1.2291 6 6 2.3605 0.0120 -2.3579 7 7 2.7064 -0.6132 -3.4620 8 14 2.3137 1.8790 -2.3173 9 1 3.5989 2.3948 -1.7810 10 1 2.1072 2.3990 -3.6929 11 1 1.1981 2.3274 -1.4459 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7117 -0.8790 2.9815 16 8 3.5795 1.1829 1.5748 17 7 1.9607 0.8091 3.3997 18 6 1.1509 -0.0351 4.2817 19 6 0.6086 0.8077 5.4378 20 1 0.2271 1.7758 5.1132 21 6 -0.3566 0.0424 6.3583 22 6 0.3211 0.7618 7.5363 23 1 -0.1384 1.7179 7.7867 24 8 0.5214 -0.0735 8.6784 25 6 1.5639 0.8915 6.6400 26 1 -0.3633 0.5918 -0.8402 27 1 -0.3634 0.4318 0.9326 28 1 -0.3635 -1.0234 -0.0924 29 1 2.9377 -0.1049 -4.2551 30 1 2.4156 -2.7377 0.9717 31 1 1.6237 -2.2852 2.5003 32 1 0.6903 -2.3002 0.9847 33 1 1.9054 1.7751 3.4681 34 1 0.3187 -0.4565 3.7178 35 1 1.7668 -0.8423 4.6782 36 1 -1.4021 0.3186 6.2211 37 1 -0.1990 -1.0362 6.3563 38 1 0.9469 0.3735 9.4228 39 1 2.2466 0.0451 6.7151 40 1 2.0689 1.8532 6.7303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351422164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:02 Heat of formation + Delta-G solvation = -106.571666 kcal Electronic energy + Delta-G solvation = -22646.078574 eV Core-core repulsion = 19202.486265 eV Total energy + Delta-G solvation = -3443.592309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.72115 -36.73169 -36.33454 -35.93973 -35.25611 -33.92927 -32.45422 -29.94203 -27.27448 -25.99053 -25.75801 -25.10858 -22.56685 -20.72651 -19.99255 -18.66401 -17.91353 -17.44051 -17.11577 -16.46505 -15.97731 -15.68506 -15.18956 -14.61048 -14.38529 -14.09556 -13.55104 -13.25743 -12.87985 -12.70695 -12.65458 -12.50285 -12.34657 -11.99066 -11.83168 -11.76023 -11.53066 -11.36366 -11.31076 -11.16065 -11.00455 -10.88374 -10.64484 -10.62993 -10.32761 -10.06550 -9.80107 -9.37542 -9.29595 -8.59669 -8.07243 -6.16203 -4.16638 1.14206 3.28398 3.35392 3.43200 3.47049 3.89214 4.03013 4.29941 4.32146 4.38275 4.49376 4.59118 4.89595 5.03818 5.11322 5.16258 5.40845 5.46430 5.50275 5.56850 5.58043 5.69215 5.85154 5.99614 6.01747 6.16657 6.19008 6.33842 6.40335 6.54724 6.58546 6.90186 7.10765 7.20716 7.33900 7.51293 7.66402 8.44233 8.89063 9.45439 10.95859 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029117 B = 0.004300 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.411908 B = 6510.742230 C = 6527.958842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.516 4.516 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.867 3.133 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.985 5.985 13 C 0.108 3.892 14 S 2.771 3.229 15 O -0.993 6.993 16 O -0.978 6.978 17 N -1.134 6.134 18 C 0.133 3.867 19 C -0.115 4.115 20 H 0.099 0.901 21 C -0.121 4.121 22 C 0.074 3.926 23 H 0.081 0.919 24 O -0.561 6.561 25 C -0.165 4.165 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.377 0.623 39 H 0.094 0.906 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 3.865 19.989 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.131 3.869 3 H 0.074 0.926 4 C -0.556 4.556 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.694 3.306 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.827 5.827 13 C -0.039 4.039 14 S 2.781 3.219 15 O -0.976 6.976 16 O -0.962 6.962 17 N -0.893 5.893 18 C 0.006 3.994 19 C -0.135 4.135 20 H 0.117 0.883 21 C -0.160 4.160 22 C 0.015 3.985 23 H 0.098 0.902 24 O -0.366 6.366 25 C -0.203 4.203 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.243 0.757 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.224 0.776 39 H 0.112 0.888 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.572 3.279 19.407 20.751 hybrid contribution -0.150 1.843 0.182 1.858 sum -6.723 5.122 19.589 21.335 Atomic orbital electron populations 1.22239 0.98316 1.01205 0.98913 1.19107 0.91160 0.93195 0.83426 0.92620 1.21144 1.44104 0.96021 0.94377 0.90027 1.24999 0.93895 0.98455 0.95305 1.69884 1.44926 1.36066 1.01728 0.87009 0.80145 0.86338 0.77149 1.18961 1.21253 1.18907 1.57919 1.70063 1.19857 1.34893 1.21189 1.01718 0.82101 0.98854 1.02290 0.73821 0.73271 0.72513 1.93538 1.69048 1.60549 1.74437 1.93603 1.74381 1.56196 1.72008 1.56238 1.62748 1.17238 1.53051 1.21176 0.94711 0.92950 0.90548 1.22533 0.97357 0.99987 0.93643 0.88258 1.23080 0.98801 1.01229 0.92847 1.23363 0.96552 0.93725 0.84867 0.90169 1.86536 1.83223 1.40954 1.25883 1.23794 0.97505 1.03179 0.95817 0.92720 0.95494 0.92769 0.92341 0.92765 0.93225 0.91112 0.75705 0.91519 0.90445 0.90522 0.88707 0.77626 0.88772 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.04 37.15 0.34 -2.51 16 2 C 0.23 5.36 2.28 -69.08 -0.16 5.20 16 3 H 0.06 1.35 4.06 -51.93 -0.21 1.14 16 4 C -0.52 -14.09 8.82 -34.44 -0.30 -14.39 16 5 H 0.08 2.38 7.67 -52.48 -0.40 1.97 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 8 Si 0.87 21.70 26.99 -169.99 -4.59 17.11 16 9 H -0.26 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.14 6.82 56.52 0.39 -5.75 16 12 N -0.98 -19.70 3.12 -115.85 -0.36 -20.06 16 13 C 0.11 1.85 9.39 59.85 0.56 2.41 16 14 S 2.77 53.24 6.09 -107.50 -0.66 52.58 16 15 O -0.99 -20.61 16.68 -57.17 -0.95 -21.56 16 16 O -0.98 -22.49 16.70 -57.17 -0.95 -23.44 16 17 N -1.13 -15.52 6.05 -10.61 -0.06 -15.58 16 18 C 0.13 1.50 6.08 -4.04 -0.02 1.48 16 19 C -0.12 -1.01 3.79 -89.81 -0.34 -1.35 16 20 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 21 C -0.12 -1.00 7.47 -25.92 -0.19 -1.19 16 22 C 0.07 0.57 5.21 -25.92 -0.14 0.44 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 O -0.56 -4.82 13.67 -35.23 -0.48 -5.30 16 25 C -0.17 -1.43 7.47 -25.92 -0.19 -1.62 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.05 1.00 6.88 -51.93 -0.36 0.64 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.70 7.79 -51.92 -0.40 0.30 16 32 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 33 H 0.41 4.80 8.64 -34.48 -0.30 4.50 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.93 7.45 -51.93 -0.39 0.54 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.38 1.63 9.12 45.56 0.42 2.04 16 39 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -34.94 336.91 -8.10 -43.05 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.35 Total: 3.47 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.55 Total: -9.42 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.35 Total: -61.56 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -2.39 Total: -50.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.59 Total: 17.11 kcal Atomic # 16 Polarization: 53.24 SS G_CDS: -0.66 Total: 52.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.94 -8.10 -43.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351422164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.526 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds